data_3AUQ # _entry.id 3AUQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AUQ pdb_00003auq 10.2210/pdb3auq/pdb RCSB RCSB029718 ? ? WWPDB D_1000029718 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AUQ _pdbx_database_status.recvd_initial_deposition_date 2011-02-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kakuda, S.' 1 'Takimoto-Kamimura, M.' 2 # _citation.id primary _citation.title 'Development of 14-epi-19-nortachysterol and its unprecedented binding configuration for the human vitamin D receptor' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 133 _citation.page_first 7215 _citation.page_last 7221 _citation.year 2011 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21500802 _citation.pdbx_database_id_DOI 10.1021/ja201481j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawada, D.' 1 ? primary 'Tsukuda, Y.' 2 ? primary 'Saito, H.' 3 ? primary 'Kakuda, S.' 4 ? primary 'Takimoto-Kamimura, M.' 5 ? primary 'Ochiai, E.' 6 ? primary 'Takenouchi, K.' 7 ? primary 'Kittaka, A.' 8 ? # _cell.entry_id 3AUQ _cell.length_a 44.313 _cell.length_b 52.108 _cell.length_c 132.577 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AUQ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vitamin D3 receptor' 29805.342 1 ? 'DEL(165-215) mutant' 'ligand binding domain' ? 2 non-polymer syn ;(1R,2S,3R)-5-[2-[(1R,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-7a-methyl-1,2,3,3a,6,7-hexahydroinden-4-yl]ethynyl]-2-methyl-cyclohex-4-ene-1,3-diol ; 414.621 1 ? ? ? ? 3 water nat water 18.015 10 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VDR, 1,25-dihydroxyvitamin D3 receptor, Nuclear receptor subfamily 1 group I member 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGF AKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLN LHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCL SFQPECSMKLTPLVLEVFGNEIS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGF AKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLN LHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCL SFQPECSMKLTPLVLEVFGNEIS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASP n 1 6 SER n 1 7 LEU n 1 8 ARG n 1 9 PRO n 1 10 LYS n 1 11 LEU n 1 12 SER n 1 13 GLU n 1 14 GLU n 1 15 GLN n 1 16 GLN n 1 17 ARG n 1 18 ILE n 1 19 ILE n 1 20 ALA n 1 21 ILE n 1 22 LEU n 1 23 LEU n 1 24 ASP n 1 25 ALA n 1 26 HIS n 1 27 HIS n 1 28 LYS n 1 29 THR n 1 30 TYR n 1 31 ASP n 1 32 PRO n 1 33 THR n 1 34 TYR n 1 35 SER n 1 36 ASP n 1 37 PHE n 1 38 CYS n 1 39 GLN n 1 40 PHE n 1 41 ARG n 1 42 PRO n 1 43 PRO n 1 44 VAL n 1 45 ARG n 1 46 VAL n 1 47 ASN n 1 48 ASP n 1 49 GLY n 1 50 GLY n 1 51 GLY n 1 52 SER n 1 53 VAL n 1 54 THR n 1 55 LEU n 1 56 GLU n 1 57 LEU n 1 58 SER n 1 59 GLN n 1 60 LEU n 1 61 SER n 1 62 MET n 1 63 LEU n 1 64 PRO n 1 65 HIS n 1 66 LEU n 1 67 ALA n 1 68 ASP n 1 69 LEU n 1 70 VAL n 1 71 SER n 1 72 TYR n 1 73 SER n 1 74 ILE n 1 75 GLN n 1 76 LYS n 1 77 VAL n 1 78 ILE n 1 79 GLY n 1 80 PHE n 1 81 ALA n 1 82 LYS n 1 83 MET n 1 84 ILE n 1 85 PRO n 1 86 GLY n 1 87 PHE n 1 88 ARG n 1 89 ASP n 1 90 LEU n 1 91 THR n 1 92 SER n 1 93 GLU n 1 94 ASP n 1 95 GLN n 1 96 ILE n 1 97 VAL n 1 98 LEU n 1 99 LEU n 1 100 LYS n 1 101 SER n 1 102 SER n 1 103 ALA n 1 104 ILE n 1 105 GLU n 1 106 VAL n 1 107 ILE n 1 108 MET n 1 109 LEU n 1 110 ARG n 1 111 SER n 1 112 ASN n 1 113 GLU n 1 114 SER n 1 115 PHE n 1 116 THR n 1 117 MET n 1 118 ASP n 1 119 ASP n 1 120 MET n 1 121 SER n 1 122 TRP n 1 123 THR n 1 124 CYS n 1 125 GLY n 1 126 ASN n 1 127 GLN n 1 128 ASP n 1 129 TYR n 1 130 LYS n 1 131 TYR n 1 132 ARG n 1 133 VAL n 1 134 SER n 1 135 ASP n 1 136 VAL n 1 137 THR n 1 138 LYS n 1 139 ALA n 1 140 GLY n 1 141 HIS n 1 142 SER n 1 143 LEU n 1 144 GLU n 1 145 LEU n 1 146 ILE n 1 147 GLU n 1 148 PRO n 1 149 LEU n 1 150 ILE n 1 151 LYS n 1 152 PHE n 1 153 GLN n 1 154 VAL n 1 155 GLY n 1 156 LEU n 1 157 LYS n 1 158 LYS n 1 159 LEU n 1 160 ASN n 1 161 LEU n 1 162 HIS n 1 163 GLU n 1 164 GLU n 1 165 GLU n 1 166 HIS n 1 167 VAL n 1 168 LEU n 1 169 LEU n 1 170 MET n 1 171 ALA n 1 172 ILE n 1 173 CYS n 1 174 ILE n 1 175 VAL n 1 176 SER n 1 177 PRO n 1 178 ASP n 1 179 ARG n 1 180 PRO n 1 181 GLY n 1 182 VAL n 1 183 GLN n 1 184 ASP n 1 185 ALA n 1 186 ALA n 1 187 LEU n 1 188 ILE n 1 189 GLU n 1 190 ALA n 1 191 ILE n 1 192 GLN n 1 193 ASP n 1 194 ARG n 1 195 LEU n 1 196 SER n 1 197 ASN n 1 198 THR n 1 199 LEU n 1 200 GLN n 1 201 THR n 1 202 TYR n 1 203 ILE n 1 204 ARG n 1 205 CYS n 1 206 ARG n 1 207 HIS n 1 208 PRO n 1 209 PRO n 1 210 PRO n 1 211 GLY n 1 212 SER n 1 213 HIS n 1 214 LEU n 1 215 LEU n 1 216 TYR n 1 217 ALA n 1 218 LYS n 1 219 MET n 1 220 ILE n 1 221 GLN n 1 222 LYS n 1 223 LEU n 1 224 ALA n 1 225 ASP n 1 226 LEU n 1 227 ARG n 1 228 SER n 1 229 LEU n 1 230 ASN n 1 231 GLU n 1 232 GLU n 1 233 HIS n 1 234 SER n 1 235 LYS n 1 236 GLN n 1 237 TYR n 1 238 ARG n 1 239 CYS n 1 240 LEU n 1 241 SER n 1 242 PHE n 1 243 GLN n 1 244 PRO n 1 245 GLU n 1 246 CYS n 1 247 SER n 1 248 MET n 1 249 LYS n 1 250 LEU n 1 251 THR n 1 252 PRO n 1 253 LEU n 1 254 VAL n 1 255 LEU n 1 256 GLU n 1 257 VAL n 1 258 PHE n 1 259 GLY n 1 260 ASN n 1 261 GLU n 1 262 ILE n 1 263 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 5 51 human ? VDR ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample ? 52 263 human ? VDR ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VDR_HUMAN P11473 1 DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGG 118 ? 2 UNP VDR_HUMAN P11473 1 ;SVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKY RVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPG SHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFGNEIS ; 216 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3AUQ A 5 ? 51 ? P11473 118 ? 164 ? 118 164 2 2 3AUQ A 52 ? 263 ? P11473 216 ? 427 ? 216 427 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3AUQ GLY A 1 ? UNP P11473 ? ? 'expression tag' 114 1 1 3AUQ SER A 2 ? UNP P11473 ? ? 'expression tag' 115 2 1 3AUQ HIS A 3 ? UNP P11473 ? ? 'expression tag' 116 3 1 3AUQ MET A 4 ? UNP P11473 ? ? 'expression tag' 117 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA9 non-polymer . ;(1R,2S,3R)-5-[2-[(1R,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-7a-methyl-1,2,3,3a,6,7-hexahydroinden-4-yl]ethynyl]-2-methyl-cyclohex-4-ene-1,3-diol ; ? 'C27 H42 O3' 414.621 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3AUQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M MES, 1.2-1.6M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3AUQ _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.60 _reflns.number_obs 9559 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.55 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.26 _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3AUQ _refine.ls_number_reflns_obs 8816 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.03 _refine.ls_d_res_high 2.64 _refine.ls_percent_reflns_obs 97.09 _refine.ls_R_factor_obs 0.23697 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23446 _refine.ls_R_factor_R_free 0.28639 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 442 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.907 _refine.correlation_coeff_Fo_to_Fc_free 0.874 _refine.B_iso_mean 42.815 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1DB1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.197 _refine.pdbx_overall_ESU_R_Free 0.375 _refine.overall_SU_ML 0.268 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.687 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2018 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 2058 _refine_hist.d_res_high 2.64 _refine_hist.d_res_low 42.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 2090 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.024 2.003 ? 2832 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.469 5.000 ? 251 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.485 24.286 ? 91 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.222 15.000 ? 383 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.879 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.062 0.200 ? 328 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1535 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.169 0.200 ? 986 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.291 0.200 ? 1463 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.093 0.200 ? 57 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.163 0.200 ? 32 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.101 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.305 1.500 ? 1316 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.546 2.000 ? 2065 'X-RAY DIFFRACTION' ? r_scbond_it 0.438 3.000 ? 863 'X-RAY DIFFRACTION' ? r_scangle_it 0.761 4.500 ? 767 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.640 _refine_ls_shell.d_res_low 2.708 _refine_ls_shell.number_reflns_R_work 625 _refine_ls_shell.R_factor_R_work 0.266 _refine_ls_shell.percent_reflns_obs 96.59 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3AUQ _struct.title ;Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2alpha-methyl-19-norvitamin D3 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AUQ _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'HORMONE RECEPTOR, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? TYR A 30 ? SER A 125 TYR A 143 1 ? 19 HELX_P HELX_P2 2 ASP A 36 ? PHE A 40 ? ASP A 149 PHE A 153 5 ? 5 HELX_P HELX_P3 3 SER A 52 ? LEU A 60 ? SER A 216 LEU A 224 1 ? 9 HELX_P HELX_P4 4 MET A 62 ? MET A 83 ? MET A 226 MET A 247 1 ? 22 HELX_P HELX_P5 5 GLY A 86 ? LEU A 90 ? GLY A 250 LEU A 254 5 ? 5 HELX_P HELX_P6 6 THR A 91 ? SER A 111 ? THR A 255 SER A 275 1 ? 21 HELX_P HELX_P7 7 ARG A 132 ? LYS A 138 ? ARG A 296 LYS A 302 1 ? 7 HELX_P HELX_P8 8 SER A 142 ? LYS A 158 ? SER A 306 LYS A 322 1 ? 17 HELX_P HELX_P9 9 HIS A 162 ? VAL A 175 ? HIS A 326 VAL A 339 1 ? 14 HELX_P HELX_P10 10 ASP A 184 ? HIS A 207 ? ASP A 348 HIS A 371 1 ? 24 HELX_P HELX_P11 11 LEU A 214 ? SER A 241 ? LEU A 378 SER A 405 1 ? 28 HELX_P HELX_P12 12 CYS A 246 ? LEU A 250 ? CYS A 410 LEU A 414 5 ? 5 HELX_P HELX_P13 13 THR A 251 ? GLY A 259 ? THR A 415 GLY A 423 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 125 A . ? GLY 289 A ASN 126 A ? ASN 290 A 1 -20.06 2 PRO 208 A . ? PRO 372 A PRO 209 A ? PRO 373 A 1 -5.27 3 PRO 209 A . ? PRO 373 A PRO 210 A ? PRO 374 A 1 -1.68 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 115 ? THR A 116 ? PHE A 279 THR A 280 A 2 SER A 121 ? THR A 123 ? SER A 285 THR A 287 A 3 LYS A 130 ? TYR A 131 ? LYS A 294 TYR A 295 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 116 ? N THR A 280 O SER A 121 ? O SER A 285 A 2 3 N TRP A 122 ? N TRP A 286 O TYR A 131 ? O TYR A 295 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA9 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE CA9 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 TYR A 30 ? TYR A 143 . ? 1_555 ? 2 AC1 9 PHE A 37 ? PHE A 150 . ? 1_555 ? 3 AC1 9 SER A 73 ? SER A 237 . ? 1_555 ? 4 AC1 9 ARG A 110 ? ARG A 274 . ? 1_555 ? 5 AC1 9 SER A 111 ? SER A 275 . ? 1_555 ? 6 AC1 9 SER A 114 ? SER A 278 . ? 1_555 ? 7 AC1 9 TRP A 122 ? TRP A 286 . ? 1_555 ? 8 AC1 9 HIS A 141 ? HIS A 305 . ? 1_555 ? 9 AC1 9 HIS A 233 ? HIS A 397 . ? 1_555 ? # _database_PDB_matrix.entry_id 3AUQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AUQ _atom_sites.fract_transf_matrix[1][1] 0.022567 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019191 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007543 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 114 ? ? ? A . n A 1 2 SER 2 115 ? ? ? A . n A 1 3 HIS 3 116 ? ? ? A . n A 1 4 MET 4 117 ? ? ? A . n A 1 5 ASP 5 118 118 ASP ASP A . n A 1 6 SER 6 119 119 SER SER A . n A 1 7 LEU 7 120 120 LEU LEU A . n A 1 8 ARG 8 121 121 ARG ARG A . n A 1 9 PRO 9 122 122 PRO PRO A . n A 1 10 LYS 10 123 123 LYS LYS A . n A 1 11 LEU 11 124 124 LEU LEU A . n A 1 12 SER 12 125 125 SER SER A . n A 1 13 GLU 13 126 126 GLU GLU A . n A 1 14 GLU 14 127 127 GLU GLU A . n A 1 15 GLN 15 128 128 GLN GLN A . n A 1 16 GLN 16 129 129 GLN GLN A . n A 1 17 ARG 17 130 130 ARG ARG A . n A 1 18 ILE 18 131 131 ILE ILE A . n A 1 19 ILE 19 132 132 ILE ILE A . n A 1 20 ALA 20 133 133 ALA ALA A . n A 1 21 ILE 21 134 134 ILE ILE A . n A 1 22 LEU 22 135 135 LEU LEU A . n A 1 23 LEU 23 136 136 LEU LEU A . n A 1 24 ASP 24 137 137 ASP ASP A . n A 1 25 ALA 25 138 138 ALA ALA A . n A 1 26 HIS 26 139 139 HIS HIS A . n A 1 27 HIS 27 140 140 HIS HIS A . n A 1 28 LYS 28 141 141 LYS LYS A . n A 1 29 THR 29 142 142 THR THR A . n A 1 30 TYR 30 143 143 TYR TYR A . n A 1 31 ASP 31 144 144 ASP ASP A . n A 1 32 PRO 32 145 145 PRO PRO A . n A 1 33 THR 33 146 146 THR THR A . n A 1 34 TYR 34 147 147 TYR TYR A . n A 1 35 SER 35 148 148 SER SER A . n A 1 36 ASP 36 149 149 ASP ASP A . n A 1 37 PHE 37 150 150 PHE PHE A . n A 1 38 CYS 38 151 151 CYS CYS A . n A 1 39 GLN 39 152 152 GLN GLN A . n A 1 40 PHE 40 153 153 PHE PHE A . n A 1 41 ARG 41 154 154 ARG ARG A . n A 1 42 PRO 42 155 155 PRO PRO A . n A 1 43 PRO 43 156 156 PRO PRO A . n A 1 44 VAL 44 157 157 VAL VAL A . n A 1 45 ARG 45 158 158 ARG ARG A . n A 1 46 VAL 46 159 159 VAL VAL A . n A 1 47 ASN 47 160 160 ASN ASN A . n A 1 48 ASP 48 161 161 ASP ASP A . n A 1 49 GLY 49 162 162 GLY GLY A . n A 1 50 GLY 50 163 ? ? ? A . n A 1 51 GLY 51 164 ? ? ? A . n A 1 52 SER 52 216 216 SER SER A . n A 1 53 VAL 53 217 217 VAL VAL A . n A 1 54 THR 54 218 218 THR THR A . n A 1 55 LEU 55 219 219 LEU LEU A . n A 1 56 GLU 56 220 220 GLU GLU A . n A 1 57 LEU 57 221 221 LEU LEU A . n A 1 58 SER 58 222 222 SER SER A . n A 1 59 GLN 59 223 223 GLN GLN A . n A 1 60 LEU 60 224 224 LEU LEU A . n A 1 61 SER 61 225 225 SER SER A . n A 1 62 MET 62 226 226 MET MET A . n A 1 63 LEU 63 227 227 LEU LEU A . n A 1 64 PRO 64 228 228 PRO PRO A . n A 1 65 HIS 65 229 229 HIS HIS A . n A 1 66 LEU 66 230 230 LEU LEU A . n A 1 67 ALA 67 231 231 ALA ALA A . n A 1 68 ASP 68 232 232 ASP ASP A . n A 1 69 LEU 69 233 233 LEU LEU A . n A 1 70 VAL 70 234 234 VAL VAL A . n A 1 71 SER 71 235 235 SER SER A . n A 1 72 TYR 72 236 236 TYR TYR A . n A 1 73 SER 73 237 237 SER SER A . n A 1 74 ILE 74 238 238 ILE ILE A . n A 1 75 GLN 75 239 239 GLN GLN A . n A 1 76 LYS 76 240 240 LYS LYS A . n A 1 77 VAL 77 241 241 VAL VAL A . n A 1 78 ILE 78 242 242 ILE ILE A . n A 1 79 GLY 79 243 243 GLY GLY A . n A 1 80 PHE 80 244 244 PHE PHE A . n A 1 81 ALA 81 245 245 ALA ALA A . n A 1 82 LYS 82 246 246 LYS LYS A . n A 1 83 MET 83 247 247 MET MET A . n A 1 84 ILE 84 248 248 ILE ILE A . n A 1 85 PRO 85 249 249 PRO PRO A . n A 1 86 GLY 86 250 250 GLY GLY A . n A 1 87 PHE 87 251 251 PHE PHE A . n A 1 88 ARG 88 252 252 ARG ARG A . n A 1 89 ASP 89 253 253 ASP ASP A . n A 1 90 LEU 90 254 254 LEU LEU A . n A 1 91 THR 91 255 255 THR THR A . n A 1 92 SER 92 256 256 SER SER A . n A 1 93 GLU 93 257 257 GLU GLU A . n A 1 94 ASP 94 258 258 ASP ASP A . n A 1 95 GLN 95 259 259 GLN GLN A . n A 1 96 ILE 96 260 260 ILE ILE A . n A 1 97 VAL 97 261 261 VAL VAL A . n A 1 98 LEU 98 262 262 LEU LEU A . n A 1 99 LEU 99 263 263 LEU LEU A . n A 1 100 LYS 100 264 264 LYS LYS A . n A 1 101 SER 101 265 265 SER SER A . n A 1 102 SER 102 266 266 SER SER A . n A 1 103 ALA 103 267 267 ALA ALA A . n A 1 104 ILE 104 268 268 ILE ILE A . n A 1 105 GLU 105 269 269 GLU GLU A . n A 1 106 VAL 106 270 270 VAL VAL A . n A 1 107 ILE 107 271 271 ILE ILE A . n A 1 108 MET 108 272 272 MET MET A . n A 1 109 LEU 109 273 273 LEU LEU A . n A 1 110 ARG 110 274 274 ARG ARG A . n A 1 111 SER 111 275 275 SER SER A . n A 1 112 ASN 112 276 276 ASN ASN A . n A 1 113 GLU 113 277 277 GLU GLU A . n A 1 114 SER 114 278 278 SER SER A . n A 1 115 PHE 115 279 279 PHE PHE A . n A 1 116 THR 116 280 280 THR THR A . n A 1 117 MET 117 281 281 MET MET A . n A 1 118 ASP 118 282 282 ASP ASP A . n A 1 119 ASP 119 283 283 ASP ASP A . n A 1 120 MET 120 284 284 MET MET A . n A 1 121 SER 121 285 285 SER SER A . n A 1 122 TRP 122 286 286 TRP TRP A . n A 1 123 THR 123 287 287 THR THR A . n A 1 124 CYS 124 288 288 CYS CYS A . n A 1 125 GLY 125 289 289 GLY GLY A . n A 1 126 ASN 126 290 290 ASN ASN A . n A 1 127 GLN 127 291 291 GLN GLN A . n A 1 128 ASP 128 292 292 ASP ASP A . n A 1 129 TYR 129 293 293 TYR TYR A . n A 1 130 LYS 130 294 294 LYS LYS A . n A 1 131 TYR 131 295 295 TYR TYR A . n A 1 132 ARG 132 296 296 ARG ARG A . n A 1 133 VAL 133 297 297 VAL VAL A . n A 1 134 SER 134 298 298 SER SER A . n A 1 135 ASP 135 299 299 ASP ASP A . n A 1 136 VAL 136 300 300 VAL VAL A . n A 1 137 THR 137 301 301 THR THR A . n A 1 138 LYS 138 302 302 LYS LYS A . n A 1 139 ALA 139 303 303 ALA ALA A . n A 1 140 GLY 140 304 304 GLY GLY A . n A 1 141 HIS 141 305 305 HIS HIS A . n A 1 142 SER 142 306 306 SER SER A . n A 1 143 LEU 143 307 307 LEU LEU A . n A 1 144 GLU 144 308 308 GLU GLU A . n A 1 145 LEU 145 309 309 LEU LEU A . n A 1 146 ILE 146 310 310 ILE ILE A . n A 1 147 GLU 147 311 311 GLU GLU A . n A 1 148 PRO 148 312 312 PRO PRO A . n A 1 149 LEU 149 313 313 LEU LEU A . n A 1 150 ILE 150 314 314 ILE ILE A . n A 1 151 LYS 151 315 315 LYS LYS A . n A 1 152 PHE 152 316 316 PHE PHE A . n A 1 153 GLN 153 317 317 GLN GLN A . n A 1 154 VAL 154 318 318 VAL VAL A . n A 1 155 GLY 155 319 319 GLY GLY A . n A 1 156 LEU 156 320 320 LEU LEU A . n A 1 157 LYS 157 321 321 LYS LYS A . n A 1 158 LYS 158 322 322 LYS LYS A . n A 1 159 LEU 159 323 323 LEU LEU A . n A 1 160 ASN 160 324 324 ASN ASN A . n A 1 161 LEU 161 325 325 LEU LEU A . n A 1 162 HIS 162 326 326 HIS HIS A . n A 1 163 GLU 163 327 327 GLU GLU A . n A 1 164 GLU 164 328 328 GLU GLU A . n A 1 165 GLU 165 329 329 GLU GLU A . n A 1 166 HIS 166 330 330 HIS HIS A . n A 1 167 VAL 167 331 331 VAL VAL A . n A 1 168 LEU 168 332 332 LEU LEU A . n A 1 169 LEU 169 333 333 LEU LEU A . n A 1 170 MET 170 334 334 MET MET A . n A 1 171 ALA 171 335 335 ALA ALA A . n A 1 172 ILE 172 336 336 ILE ILE A . n A 1 173 CYS 173 337 337 CYS CYS A . n A 1 174 ILE 174 338 338 ILE ILE A . n A 1 175 VAL 175 339 339 VAL VAL A . n A 1 176 SER 176 340 340 SER SER A . n A 1 177 PRO 177 341 341 PRO PRO A . n A 1 178 ASP 178 342 342 ASP ASP A . n A 1 179 ARG 179 343 343 ARG ARG A . n A 1 180 PRO 180 344 344 PRO PRO A . n A 1 181 GLY 181 345 345 GLY GLY A . n A 1 182 VAL 182 346 346 VAL VAL A . n A 1 183 GLN 183 347 347 GLN GLN A . n A 1 184 ASP 184 348 348 ASP ASP A . n A 1 185 ALA 185 349 349 ALA ALA A . n A 1 186 ALA 186 350 350 ALA ALA A . n A 1 187 LEU 187 351 351 LEU LEU A . n A 1 188 ILE 188 352 352 ILE ILE A . n A 1 189 GLU 189 353 353 GLU GLU A . n A 1 190 ALA 190 354 354 ALA ALA A . n A 1 191 ILE 191 355 355 ILE ILE A . n A 1 192 GLN 192 356 356 GLN GLN A . n A 1 193 ASP 193 357 357 ASP ASP A . n A 1 194 ARG 194 358 358 ARG ARG A . n A 1 195 LEU 195 359 359 LEU LEU A . n A 1 196 SER 196 360 360 SER SER A . n A 1 197 ASN 197 361 361 ASN ASN A . n A 1 198 THR 198 362 362 THR THR A . n A 1 199 LEU 199 363 363 LEU LEU A . n A 1 200 GLN 200 364 364 GLN GLN A . n A 1 201 THR 201 365 365 THR THR A . n A 1 202 TYR 202 366 366 TYR TYR A . n A 1 203 ILE 203 367 367 ILE ILE A . n A 1 204 ARG 204 368 368 ARG ARG A . n A 1 205 CYS 205 369 369 CYS CYS A . n A 1 206 ARG 206 370 370 ARG ARG A . n A 1 207 HIS 207 371 371 HIS HIS A . n A 1 208 PRO 208 372 372 PRO PRO A . n A 1 209 PRO 209 373 373 PRO PRO A . n A 1 210 PRO 210 374 374 PRO PRO A . n A 1 211 GLY 211 375 375 GLY GLY A . n A 1 212 SER 212 376 376 SER SER A . n A 1 213 HIS 213 377 377 HIS HIS A . n A 1 214 LEU 214 378 378 LEU LEU A . n A 1 215 LEU 215 379 379 LEU LEU A . n A 1 216 TYR 216 380 380 TYR TYR A . n A 1 217 ALA 217 381 381 ALA ALA A . n A 1 218 LYS 218 382 382 LYS LYS A . n A 1 219 MET 219 383 383 MET MET A . n A 1 220 ILE 220 384 384 ILE ILE A . n A 1 221 GLN 221 385 385 GLN GLN A . n A 1 222 LYS 222 386 386 LYS LYS A . n A 1 223 LEU 223 387 387 LEU LEU A . n A 1 224 ALA 224 388 388 ALA ALA A . n A 1 225 ASP 225 389 389 ASP ASP A . n A 1 226 LEU 226 390 390 LEU LEU A . n A 1 227 ARG 227 391 391 ARG ARG A . n A 1 228 SER 228 392 392 SER SER A . n A 1 229 LEU 229 393 393 LEU LEU A . n A 1 230 ASN 230 394 394 ASN ASN A . n A 1 231 GLU 231 395 395 GLU GLU A . n A 1 232 GLU 232 396 396 GLU GLU A . n A 1 233 HIS 233 397 397 HIS HIS A . n A 1 234 SER 234 398 398 SER SER A . n A 1 235 LYS 235 399 399 LYS LYS A . n A 1 236 GLN 236 400 400 GLN GLN A . n A 1 237 TYR 237 401 401 TYR TYR A . n A 1 238 ARG 238 402 402 ARG ARG A . n A 1 239 CYS 239 403 403 CYS CYS A . n A 1 240 LEU 240 404 404 LEU LEU A . n A 1 241 SER 241 405 405 SER SER A . n A 1 242 PHE 242 406 406 PHE PHE A . n A 1 243 GLN 243 407 407 GLN GLN A . n A 1 244 PRO 244 408 408 PRO PRO A . n A 1 245 GLU 245 409 409 GLU GLU A . n A 1 246 CYS 246 410 410 CYS CYS A . n A 1 247 SER 247 411 411 SER SER A . n A 1 248 MET 248 412 412 MET MET A . n A 1 249 LYS 249 413 413 LYS LYS A . n A 1 250 LEU 250 414 414 LEU LEU A . n A 1 251 THR 251 415 415 THR THR A . n A 1 252 PRO 252 416 416 PRO PRO A . n A 1 253 LEU 253 417 417 LEU LEU A . n A 1 254 VAL 254 418 418 VAL VAL A . n A 1 255 LEU 255 419 419 LEU LEU A . n A 1 256 GLU 256 420 420 GLU GLU A . n A 1 257 VAL 257 421 421 VAL VAL A . n A 1 258 PHE 258 422 422 PHE PHE A . n A 1 259 GLY 259 423 423 GLY GLY A . n A 1 260 ASN 260 424 ? ? ? A . n A 1 261 GLU 261 425 ? ? ? A . n A 1 262 ILE 262 426 ? ? ? A . n A 1 263 SER 263 427 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA9 1 1 1 CA9 MOL A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 428 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-14 2 'Structure model' 1 1 2017-08-16 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' software 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.sequence_details 'THIS ENTRY IS DELETION MUTANT. REISDUES 165-215 WERE DELETED.' _pdbx_entry_details.entry_id 3AUQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 283 ? ? -141.69 13.04 2 1 CYS A 288 ? ? -112.98 52.20 3 1 GLN A 291 ? ? -175.46 -44.52 4 1 ASP A 342 ? ? -92.06 57.22 5 1 GLN A 347 ? ? -90.14 -73.87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 114 ? A GLY 1 2 1 Y 1 A SER 115 ? A SER 2 3 1 Y 1 A HIS 116 ? A HIS 3 4 1 Y 1 A MET 117 ? A MET 4 5 1 Y 1 A GLY 163 ? A GLY 50 6 1 Y 1 A GLY 164 ? A GLY 51 7 1 Y 1 A ASN 424 ? A ASN 260 8 1 Y 1 A GLU 425 ? A GLU 261 9 1 Y 1 A ILE 426 ? A ILE 262 10 1 Y 1 A SER 427 ? A SER 263 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA9 C1 C N N 74 CA9 C2 C N N 75 CA9 C3 C N N 76 CA9 C4 C N N 77 CA9 C5 C N R 78 CA9 C6 C N S 79 CA9 C7 C N N 80 CA9 C8 C N N 81 CA9 C9 C N R 82 CA9 C10 C N N 83 CA9 C12 C N R 84 CA9 C13 C N N 85 CA9 C14 C N N 86 CA9 C15 C N N 87 CA9 C16 C N N 88 CA9 C17 C N N 89 CA9 C18 C N N 90 CA9 C19 C N N 91 CA9 O20 O N N 92 CA9 C21 C N N 93 CA9 C22 C N N 94 CA9 C23 C N N 95 CA9 C24 C N N 96 CA9 C25 C N R 97 CA9 C26 C N S 98 CA9 C27 C N R 99 CA9 C28 C N N 100 CA9 O29 O N N 101 CA9 O30 O N N 102 CA9 C31 C N N 103 CA9 H2 H N N 104 CA9 H2A H N N 105 CA9 H3 H N N 106 CA9 H3A H N N 107 CA9 H4 H N N 108 CA9 H6 H N N 109 CA9 H7 H N N 110 CA9 H7A H N N 111 CA9 H8 H N N 112 CA9 H8A H N N 113 CA9 H9 H N N 114 CA9 H10 H N N 115 CA9 H10A H N N 116 CA9 H10B H N N 117 CA9 H12 H N N 118 CA9 H13 H N N 119 CA9 H13A H N N 120 CA9 H13B H N N 121 CA9 H14 H N N 122 CA9 H14A H N N 123 CA9 H15 H N N 124 CA9 H15A H N N 125 CA9 H16 H N N 126 CA9 H16A H N N 127 CA9 H18 H N N 128 CA9 H18A H N N 129 CA9 H18B H N N 130 CA9 H19 H N N 131 CA9 H19A H N N 132 CA9 H19B H N N 133 CA9 HO20 H N N 134 CA9 H24 H N N 135 CA9 H24A H N N 136 CA9 H25 H N N 137 CA9 H26 H N N 138 CA9 H27 H N N 139 CA9 H28 H N N 140 CA9 HO29 H N N 141 CA9 HO30 H N N 142 CA9 H31 H N N 143 CA9 H31A H N N 144 CA9 H31B H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 GLN N N N N 160 GLN CA C N S 161 GLN C C N N 162 GLN O O N N 163 GLN CB C N N 164 GLN CG C N N 165 GLN CD C N N 166 GLN OE1 O N N 167 GLN NE2 N N N 168 GLN OXT O N N 169 GLN H H N N 170 GLN H2 H N N 171 GLN HA H N N 172 GLN HB2 H N N 173 GLN HB3 H N N 174 GLN HG2 H N N 175 GLN HG3 H N N 176 GLN HE21 H N N 177 GLN HE22 H N N 178 GLN HXT H N N 179 GLU N N N N 180 GLU CA C N S 181 GLU C C N N 182 GLU O O N N 183 GLU CB C N N 184 GLU CG C N N 185 GLU CD C N N 186 GLU OE1 O N N 187 GLU OE2 O N N 188 GLU OXT O N N 189 GLU H H N N 190 GLU H2 H N N 191 GLU HA H N N 192 GLU HB2 H N N 193 GLU HB3 H N N 194 GLU HG2 H N N 195 GLU HG3 H N N 196 GLU HE2 H N N 197 GLU HXT H N N 198 GLY N N N N 199 GLY CA C N N 200 GLY C C N N 201 GLY O O N N 202 GLY OXT O N N 203 GLY H H N N 204 GLY H2 H N N 205 GLY HA2 H N N 206 GLY HA3 H N N 207 GLY HXT H N N 208 HIS N N N N 209 HIS CA C N S 210 HIS C C N N 211 HIS O O N N 212 HIS CB C N N 213 HIS CG C Y N 214 HIS ND1 N Y N 215 HIS CD2 C Y N 216 HIS CE1 C Y N 217 HIS NE2 N Y N 218 HIS OXT O N N 219 HIS H H N N 220 HIS H2 H N N 221 HIS HA H N N 222 HIS HB2 H N N 223 HIS HB3 H N N 224 HIS HD1 H N N 225 HIS HD2 H N N 226 HIS HE1 H N N 227 HIS HE2 H N N 228 HIS HXT H N N 229 HOH O O N N 230 HOH H1 H N N 231 HOH H2 H N N 232 ILE N N N N 233 ILE CA C N S 234 ILE C C N N 235 ILE O O N N 236 ILE CB C N S 237 ILE CG1 C N N 238 ILE CG2 C N N 239 ILE CD1 C N N 240 ILE OXT O N N 241 ILE H H N N 242 ILE H2 H N N 243 ILE HA H N N 244 ILE HB H N N 245 ILE HG12 H N N 246 ILE HG13 H N N 247 ILE HG21 H N N 248 ILE HG22 H N N 249 ILE HG23 H N N 250 ILE HD11 H N N 251 ILE HD12 H N N 252 ILE HD13 H N N 253 ILE HXT H N N 254 LEU N N N N 255 LEU CA C N S 256 LEU C C N N 257 LEU O O N N 258 LEU CB C N N 259 LEU CG C N N 260 LEU CD1 C N N 261 LEU CD2 C N N 262 LEU OXT O N N 263 LEU H H N N 264 LEU H2 H N N 265 LEU HA H N N 266 LEU HB2 H N N 267 LEU HB3 H N N 268 LEU HG H N N 269 LEU HD11 H N N 270 LEU HD12 H N N 271 LEU HD13 H N N 272 LEU HD21 H N N 273 LEU HD22 H N N 274 LEU HD23 H N N 275 LEU HXT H N N 276 LYS N N N N 277 LYS CA C N S 278 LYS C C N N 279 LYS O O N N 280 LYS CB C N N 281 LYS CG C N N 282 LYS CD C N N 283 LYS CE C N N 284 LYS NZ N N N 285 LYS OXT O N N 286 LYS H H N N 287 LYS H2 H N N 288 LYS HA H N N 289 LYS HB2 H N N 290 LYS HB3 H N N 291 LYS HG2 H N N 292 LYS HG3 H N N 293 LYS HD2 H N N 294 LYS HD3 H N N 295 LYS HE2 H N N 296 LYS HE3 H N N 297 LYS HZ1 H N N 298 LYS HZ2 H N N 299 LYS HZ3 H N N 300 LYS HXT H N N 301 MET N N N N 302 MET CA C N S 303 MET C C N N 304 MET O O N N 305 MET CB C N N 306 MET CG C N N 307 MET SD S N N 308 MET CE C N N 309 MET OXT O N N 310 MET H H N N 311 MET H2 H N N 312 MET HA H N N 313 MET HB2 H N N 314 MET HB3 H N N 315 MET HG2 H N N 316 MET HG3 H N N 317 MET HE1 H N N 318 MET HE2 H N N 319 MET HE3 H N N 320 MET HXT H N N 321 PHE N N N N 322 PHE CA C N S 323 PHE C C N N 324 PHE O O N N 325 PHE CB C N N 326 PHE CG C Y N 327 PHE CD1 C Y N 328 PHE CD2 C Y N 329 PHE CE1 C Y N 330 PHE CE2 C Y N 331 PHE CZ C Y N 332 PHE OXT O N N 333 PHE H H N N 334 PHE H2 H N N 335 PHE HA H N N 336 PHE HB2 H N N 337 PHE HB3 H N N 338 PHE HD1 H N N 339 PHE HD2 H N N 340 PHE HE1 H N N 341 PHE HE2 H N N 342 PHE HZ H N N 343 PHE HXT H N N 344 PRO N N N N 345 PRO CA C N S 346 PRO C C N N 347 PRO O O N N 348 PRO CB C N N 349 PRO CG C N N 350 PRO CD C N N 351 PRO OXT O N N 352 PRO H H N N 353 PRO HA H N N 354 PRO HB2 H N N 355 PRO HB3 H N N 356 PRO HG2 H N N 357 PRO HG3 H N N 358 PRO HD2 H N N 359 PRO HD3 H N N 360 PRO HXT H N N 361 SER N N N N 362 SER CA C N S 363 SER C C N N 364 SER O O N N 365 SER CB C N N 366 SER OG O N N 367 SER OXT O N N 368 SER H H N N 369 SER H2 H N N 370 SER HA H N N 371 SER HB2 H N N 372 SER HB3 H N N 373 SER HG H N N 374 SER HXT H N N 375 THR N N N N 376 THR CA C N S 377 THR C C N N 378 THR O O N N 379 THR CB C N R 380 THR OG1 O N N 381 THR CG2 C N N 382 THR OXT O N N 383 THR H H N N 384 THR H2 H N N 385 THR HA H N N 386 THR HB H N N 387 THR HG1 H N N 388 THR HG21 H N N 389 THR HG22 H N N 390 THR HG23 H N N 391 THR HXT H N N 392 TRP N N N N 393 TRP CA C N S 394 TRP C C N N 395 TRP O O N N 396 TRP CB C N N 397 TRP CG C Y N 398 TRP CD1 C Y N 399 TRP CD2 C Y N 400 TRP NE1 N Y N 401 TRP CE2 C Y N 402 TRP CE3 C Y N 403 TRP CZ2 C Y N 404 TRP CZ3 C Y N 405 TRP CH2 C Y N 406 TRP OXT O N N 407 TRP H H N N 408 TRP H2 H N N 409 TRP HA H N N 410 TRP HB2 H N N 411 TRP HB3 H N N 412 TRP HD1 H N N 413 TRP HE1 H N N 414 TRP HE3 H N N 415 TRP HZ2 H N N 416 TRP HZ3 H N N 417 TRP HH2 H N N 418 TRP HXT H N N 419 TYR N N N N 420 TYR CA C N S 421 TYR C C N N 422 TYR O O N N 423 TYR CB C N N 424 TYR CG C Y N 425 TYR CD1 C Y N 426 TYR CD2 C Y N 427 TYR CE1 C Y N 428 TYR CE2 C Y N 429 TYR CZ C Y N 430 TYR OH O N N 431 TYR OXT O N N 432 TYR H H N N 433 TYR H2 H N N 434 TYR HA H N N 435 TYR HB2 H N N 436 TYR HB3 H N N 437 TYR HD1 H N N 438 TYR HD2 H N N 439 TYR HE1 H N N 440 TYR HE2 H N N 441 TYR HH H N N 442 TYR HXT H N N 443 VAL N N N N 444 VAL CA C N S 445 VAL C C N N 446 VAL O O N N 447 VAL CB C N N 448 VAL CG1 C N N 449 VAL CG2 C N N 450 VAL OXT O N N 451 VAL H H N N 452 VAL H2 H N N 453 VAL HA H N N 454 VAL HB H N N 455 VAL HG11 H N N 456 VAL HG12 H N N 457 VAL HG13 H N N 458 VAL HG21 H N N 459 VAL HG22 H N N 460 VAL HG23 H N N 461 VAL HXT H N N 462 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CA9 C1 C4 doub N N 70 CA9 C1 C6 sing N N 71 CA9 C1 C21 sing N N 72 CA9 C2 C3 sing N N 73 CA9 C2 C5 sing N N 74 CA9 C3 C4 sing N N 75 CA9 C5 C6 sing N N 76 CA9 C5 C9 sing N N 77 CA9 C5 C10 sing N N 78 CA9 C6 C7 sing N N 79 CA9 C7 C8 sing N N 80 CA9 C8 C9 sing N N 81 CA9 C9 C12 sing N N 82 CA9 C12 C13 sing N N 83 CA9 C12 C14 sing N N 84 CA9 C14 C15 sing N N 85 CA9 C15 C16 sing N N 86 CA9 C16 C17 sing N N 87 CA9 C17 C18 sing N N 88 CA9 C17 C19 sing N N 89 CA9 C17 O20 sing N N 90 CA9 C21 C22 trip N N 91 CA9 C22 C23 sing N N 92 CA9 C23 C24 sing N N 93 CA9 C23 C28 doub N N 94 CA9 C24 C25 sing N N 95 CA9 C25 C26 sing N N 96 CA9 C25 O29 sing N N 97 CA9 C26 C27 sing N N 98 CA9 C26 C31 sing N N 99 CA9 C27 C28 sing N N 100 CA9 C27 O30 sing N N 101 CA9 C2 H2 sing N N 102 CA9 C2 H2A sing N N 103 CA9 C3 H3 sing N N 104 CA9 C3 H3A sing N N 105 CA9 C4 H4 sing N N 106 CA9 C6 H6 sing N N 107 CA9 C7 H7 sing N N 108 CA9 C7 H7A sing N N 109 CA9 C8 H8 sing N N 110 CA9 C8 H8A sing N N 111 CA9 C9 H9 sing N N 112 CA9 C10 H10 sing N N 113 CA9 C10 H10A sing N N 114 CA9 C10 H10B sing N N 115 CA9 C12 H12 sing N N 116 CA9 C13 H13 sing N N 117 CA9 C13 H13A sing N N 118 CA9 C13 H13B sing N N 119 CA9 C14 H14 sing N N 120 CA9 C14 H14A sing N N 121 CA9 C15 H15 sing N N 122 CA9 C15 H15A sing N N 123 CA9 C16 H16 sing N N 124 CA9 C16 H16A sing N N 125 CA9 C18 H18 sing N N 126 CA9 C18 H18A sing N N 127 CA9 C18 H18B sing N N 128 CA9 C19 H19 sing N N 129 CA9 C19 H19A sing N N 130 CA9 C19 H19B sing N N 131 CA9 O20 HO20 sing N N 132 CA9 C24 H24 sing N N 133 CA9 C24 H24A sing N N 134 CA9 C25 H25 sing N N 135 CA9 C26 H26 sing N N 136 CA9 C27 H27 sing N N 137 CA9 C28 H28 sing N N 138 CA9 O29 HO29 sing N N 139 CA9 O30 HO30 sing N N 140 CA9 C31 H31 sing N N 141 CA9 C31 H31A sing N N 142 CA9 C31 H31B sing N N 143 CYS N CA sing N N 144 CYS N H sing N N 145 CYS N H2 sing N N 146 CYS CA C sing N N 147 CYS CA CB sing N N 148 CYS CA HA sing N N 149 CYS C O doub N N 150 CYS C OXT sing N N 151 CYS CB SG sing N N 152 CYS CB HB2 sing N N 153 CYS CB HB3 sing N N 154 CYS SG HG sing N N 155 CYS OXT HXT sing N N 156 GLN N CA sing N N 157 GLN N H sing N N 158 GLN N H2 sing N N 159 GLN CA C sing N N 160 GLN CA CB sing N N 161 GLN CA HA sing N N 162 GLN C O doub N N 163 GLN C OXT sing N N 164 GLN CB CG sing N N 165 GLN CB HB2 sing N N 166 GLN CB HB3 sing N N 167 GLN CG CD sing N N 168 GLN CG HG2 sing N N 169 GLN CG HG3 sing N N 170 GLN CD OE1 doub N N 171 GLN CD NE2 sing N N 172 GLN NE2 HE21 sing N N 173 GLN NE2 HE22 sing N N 174 GLN OXT HXT sing N N 175 GLU N CA sing N N 176 GLU N H sing N N 177 GLU N H2 sing N N 178 GLU CA C sing N N 179 GLU CA CB sing N N 180 GLU CA HA sing N N 181 GLU C O doub N N 182 GLU C OXT sing N N 183 GLU CB CG sing N N 184 GLU CB HB2 sing N N 185 GLU CB HB3 sing N N 186 GLU CG CD sing N N 187 GLU CG HG2 sing N N 188 GLU CG HG3 sing N N 189 GLU CD OE1 doub N N 190 GLU CD OE2 sing N N 191 GLU OE2 HE2 sing N N 192 GLU OXT HXT sing N N 193 GLY N CA sing N N 194 GLY N H sing N N 195 GLY N H2 sing N N 196 GLY CA C sing N N 197 GLY CA HA2 sing N N 198 GLY CA HA3 sing N N 199 GLY C O doub N N 200 GLY C OXT sing N N 201 GLY OXT HXT sing N N 202 HIS N CA sing N N 203 HIS N H sing N N 204 HIS N H2 sing N N 205 HIS CA C sing N N 206 HIS CA CB sing N N 207 HIS CA HA sing N N 208 HIS C O doub N N 209 HIS C OXT sing N N 210 HIS CB CG sing N N 211 HIS CB HB2 sing N N 212 HIS CB HB3 sing N N 213 HIS CG ND1 sing Y N 214 HIS CG CD2 doub Y N 215 HIS ND1 CE1 doub Y N 216 HIS ND1 HD1 sing N N 217 HIS CD2 NE2 sing Y N 218 HIS CD2 HD2 sing N N 219 HIS CE1 NE2 sing Y N 220 HIS CE1 HE1 sing N N 221 HIS NE2 HE2 sing N N 222 HIS OXT HXT sing N N 223 HOH O H1 sing N N 224 HOH O H2 sing N N 225 ILE N CA sing N N 226 ILE N H sing N N 227 ILE N H2 sing N N 228 ILE CA C sing N N 229 ILE CA CB sing N N 230 ILE CA HA sing N N 231 ILE C O doub N N 232 ILE C OXT sing N N 233 ILE CB CG1 sing N N 234 ILE CB CG2 sing N N 235 ILE CB HB sing N N 236 ILE CG1 CD1 sing N N 237 ILE CG1 HG12 sing N N 238 ILE CG1 HG13 sing N N 239 ILE CG2 HG21 sing N N 240 ILE CG2 HG22 sing N N 241 ILE CG2 HG23 sing N N 242 ILE CD1 HD11 sing N N 243 ILE CD1 HD12 sing N N 244 ILE CD1 HD13 sing N N 245 ILE OXT HXT sing N N 246 LEU N CA sing N N 247 LEU N H sing N N 248 LEU N H2 sing N N 249 LEU CA C sing N N 250 LEU CA CB sing N N 251 LEU CA HA sing N N 252 LEU C O doub N N 253 LEU C OXT sing N N 254 LEU CB CG sing N N 255 LEU CB HB2 sing N N 256 LEU CB HB3 sing N N 257 LEU CG CD1 sing N N 258 LEU CG CD2 sing N N 259 LEU CG HG sing N N 260 LEU CD1 HD11 sing N N 261 LEU CD1 HD12 sing N N 262 LEU CD1 HD13 sing N N 263 LEU CD2 HD21 sing N N 264 LEU CD2 HD22 sing N N 265 LEU CD2 HD23 sing N N 266 LEU OXT HXT sing N N 267 LYS N CA sing N N 268 LYS N H sing N N 269 LYS N H2 sing N N 270 LYS CA C sing N N 271 LYS CA CB sing N N 272 LYS CA HA sing N N 273 LYS C O doub N N 274 LYS C OXT sing N N 275 LYS CB CG sing N N 276 LYS CB HB2 sing N N 277 LYS CB HB3 sing N N 278 LYS CG CD sing N N 279 LYS CG HG2 sing N N 280 LYS CG HG3 sing N N 281 LYS CD CE sing N N 282 LYS CD HD2 sing N N 283 LYS CD HD3 sing N N 284 LYS CE NZ sing N N 285 LYS CE HE2 sing N N 286 LYS CE HE3 sing N N 287 LYS NZ HZ1 sing N N 288 LYS NZ HZ2 sing N N 289 LYS NZ HZ3 sing N N 290 LYS OXT HXT sing N N 291 MET N CA sing N N 292 MET N H sing N N 293 MET N H2 sing N N 294 MET CA C sing N N 295 MET CA CB sing N N 296 MET CA HA sing N N 297 MET C O doub N N 298 MET C OXT sing N N 299 MET CB CG sing N N 300 MET CB HB2 sing N N 301 MET CB HB3 sing N N 302 MET CG SD sing N N 303 MET CG HG2 sing N N 304 MET CG HG3 sing N N 305 MET SD CE sing N N 306 MET CE HE1 sing N N 307 MET CE HE2 sing N N 308 MET CE HE3 sing N N 309 MET OXT HXT sing N N 310 PHE N CA sing N N 311 PHE N H sing N N 312 PHE N H2 sing N N 313 PHE CA C sing N N 314 PHE CA CB sing N N 315 PHE CA HA sing N N 316 PHE C O doub N N 317 PHE C OXT sing N N 318 PHE CB CG sing N N 319 PHE CB HB2 sing N N 320 PHE CB HB3 sing N N 321 PHE CG CD1 doub Y N 322 PHE CG CD2 sing Y N 323 PHE CD1 CE1 sing Y N 324 PHE CD1 HD1 sing N N 325 PHE CD2 CE2 doub Y N 326 PHE CD2 HD2 sing N N 327 PHE CE1 CZ doub Y N 328 PHE CE1 HE1 sing N N 329 PHE CE2 CZ sing Y N 330 PHE CE2 HE2 sing N N 331 PHE CZ HZ sing N N 332 PHE OXT HXT sing N N 333 PRO N CA sing N N 334 PRO N CD sing N N 335 PRO N H sing N N 336 PRO CA C sing N N 337 PRO CA CB sing N N 338 PRO CA HA sing N N 339 PRO C O doub N N 340 PRO C OXT sing N N 341 PRO CB CG sing N N 342 PRO CB HB2 sing N N 343 PRO CB HB3 sing N N 344 PRO CG CD sing N N 345 PRO CG HG2 sing N N 346 PRO CG HG3 sing N N 347 PRO CD HD2 sing N N 348 PRO CD HD3 sing N N 349 PRO OXT HXT sing N N 350 SER N CA sing N N 351 SER N H sing N N 352 SER N H2 sing N N 353 SER CA C sing N N 354 SER CA CB sing N N 355 SER CA HA sing N N 356 SER C O doub N N 357 SER C OXT sing N N 358 SER CB OG sing N N 359 SER CB HB2 sing N N 360 SER CB HB3 sing N N 361 SER OG HG sing N N 362 SER OXT HXT sing N N 363 THR N CA sing N N 364 THR N H sing N N 365 THR N H2 sing N N 366 THR CA C sing N N 367 THR CA CB sing N N 368 THR CA HA sing N N 369 THR C O doub N N 370 THR C OXT sing N N 371 THR CB OG1 sing N N 372 THR CB CG2 sing N N 373 THR CB HB sing N N 374 THR OG1 HG1 sing N N 375 THR CG2 HG21 sing N N 376 THR CG2 HG22 sing N N 377 THR CG2 HG23 sing N N 378 THR OXT HXT sing N N 379 TRP N CA sing N N 380 TRP N H sing N N 381 TRP N H2 sing N N 382 TRP CA C sing N N 383 TRP CA CB sing N N 384 TRP CA HA sing N N 385 TRP C O doub N N 386 TRP C OXT sing N N 387 TRP CB CG sing N N 388 TRP CB HB2 sing N N 389 TRP CB HB3 sing N N 390 TRP CG CD1 doub Y N 391 TRP CG CD2 sing Y N 392 TRP CD1 NE1 sing Y N 393 TRP CD1 HD1 sing N N 394 TRP CD2 CE2 doub Y N 395 TRP CD2 CE3 sing Y N 396 TRP NE1 CE2 sing Y N 397 TRP NE1 HE1 sing N N 398 TRP CE2 CZ2 sing Y N 399 TRP CE3 CZ3 doub Y N 400 TRP CE3 HE3 sing N N 401 TRP CZ2 CH2 doub Y N 402 TRP CZ2 HZ2 sing N N 403 TRP CZ3 CH2 sing Y N 404 TRP CZ3 HZ3 sing N N 405 TRP CH2 HH2 sing N N 406 TRP OXT HXT sing N N 407 TYR N CA sing N N 408 TYR N H sing N N 409 TYR N H2 sing N N 410 TYR CA C sing N N 411 TYR CA CB sing N N 412 TYR CA HA sing N N 413 TYR C O doub N N 414 TYR C OXT sing N N 415 TYR CB CG sing N N 416 TYR CB HB2 sing N N 417 TYR CB HB3 sing N N 418 TYR CG CD1 doub Y N 419 TYR CG CD2 sing Y N 420 TYR CD1 CE1 sing Y N 421 TYR CD1 HD1 sing N N 422 TYR CD2 CE2 doub Y N 423 TYR CD2 HD2 sing N N 424 TYR CE1 CZ doub Y N 425 TYR CE1 HE1 sing N N 426 TYR CE2 CZ sing Y N 427 TYR CE2 HE2 sing N N 428 TYR CZ OH sing N N 429 TYR OH HH sing N N 430 TYR OXT HXT sing N N 431 VAL N CA sing N N 432 VAL N H sing N N 433 VAL N H2 sing N N 434 VAL CA C sing N N 435 VAL CA CB sing N N 436 VAL CA HA sing N N 437 VAL C O doub N N 438 VAL C OXT sing N N 439 VAL CB CG1 sing N N 440 VAL CB CG2 sing N N 441 VAL CB HB sing N N 442 VAL CG1 HG11 sing N N 443 VAL CG1 HG12 sing N N 444 VAL CG1 HG13 sing N N 445 VAL CG2 HG21 sing N N 446 VAL CG2 HG22 sing N N 447 VAL CG2 HG23 sing N N 448 VAL OXT HXT sing N N 449 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(1R,2S,3R)-5-[2-[(1R,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-7a-methyl-1,2,3,3a,6,7-hexahydroinden-4-yl]ethynyl]-2-methyl-cyclohex-4-ene-1,3-diol ; CA9 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DB1 _pdbx_initial_refinement_model.details ? #