HEADER IMMUNE SYSTEM 04-MAR-11 3AVE TITLE CRYSTAL STRUCTURE OF THE FUCOSYLATED FC FRAGMENT FROM HUMAN TITLE 2 IMMUNOGLOBULIN G1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FC FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DG44; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKANTEX2160 KEYWDS IMMUNOGLOBULIN, IGG1, IMMUNE SYSTEM, IMMUNOGLOBULIN-LIKE BETA- KEYWDS 2 SANDWICH EXPDTA X-RAY DIFFRACTION AUTHOR S.MATSUMIYA,Y.YAMAGUCHI,J.SAITO,M.NAGANO,H.SASAKAWA,S.OTAKI,M.SATOH, AUTHOR 2 K.SHITARA,K.KATO REVDAT 5 30-OCT-24 3AVE 1 REMARK REVDAT 4 01-NOV-23 3AVE 1 HETSYN REVDAT 3 29-JUL-20 3AVE 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 18-MAY-11 3AVE 1 JRNL REVDAT 1 06-APR-11 3AVE 0 SPRSDE 06-APR-11 3AVE 2DTQ JRNL AUTH S.MATSUMIYA,Y.YAMAGUCHI,J.SAITO,M.NAGANO,H.SASAKAWA,S.OTAKI, JRNL AUTH 2 M.SATOH,K.SHITARA,K.KATO JRNL TITL CORRIGENDUM TO "STRUCTURAL COMPARISON OF FUCOSYLATED AND JRNL TITL 2 NONFUCOSYLATED FC FRAGMENTS OF HUMAN IMMUNOGLOBULIN G1" [J. JRNL TITL 3 MOL. BIOL. 386/3 (2007) 767-779] JRNL REF J.MOL.BIOL. V. 408 1001 2011 JRNL REFN ISSN 0022-2836 JRNL DOI 10.1016/J.JMB.2011.03.031 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.MATSUMIYA,Y.YAMAGUCHI,J.SAITO,M.NAGANO,H.SASAKAWA,S.OTAKI, REMARK 1 AUTH 2 M.SATOH,K.SHITARA,K.KATO REMARK 1 TITL STRUCTURAL COMPARISON OF FUCOSYLATED AND NONFUCOSYLATED FC REMARK 1 TITL 2 FRAGMENTS OF HUMAN IMMUNOGLOBULIN G1 REMARK 1 REF J.MOL.BIOL. V. 368 767 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17368483 REMARK 1 DOI 10.1016/J.JMB.2007.02.034 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1935 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 199 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.377 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3658 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5011 ; 1.672 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 6.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;36.250 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;14.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2642 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1478 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2445 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 248 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.013 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.029 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2168 ; 1.841 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3467 ; 2.868 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1684 ; 4.078 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1544 ; 5.690 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 234 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2381 14.2071 59.9445 REMARK 3 T TENSOR REMARK 3 T11: -0.0154 T22: 0.0112 REMARK 3 T33: -0.0134 T12: -0.0049 REMARK 3 T13: -0.0034 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.1789 L22: 0.0772 REMARK 3 L33: 0.4410 L12: 0.0296 REMARK 3 L13: -0.2218 L23: -0.0635 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0060 S13: 0.0050 REMARK 3 S21: -0.0039 S22: 0.0102 S23: 0.0059 REMARK 3 S31: 0.0022 S32: 0.0052 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7691 8.4605 29.5792 REMARK 3 T TENSOR REMARK 3 T11: -0.0078 T22: 0.0128 REMARK 3 T33: -0.0228 T12: -0.0027 REMARK 3 T13: 0.0027 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4632 L22: 0.1492 REMARK 3 L33: 0.1076 L12: -0.0246 REMARK 3 L13: 0.0699 L23: -0.0244 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0267 S13: 0.0243 REMARK 3 S21: -0.0100 S22: 0.0061 S23: 0.0033 REMARK 3 S31: 0.0006 S32: -0.0002 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1924 10.0304 59.5208 REMARK 3 T TENSOR REMARK 3 T11: -0.0324 T22: 0.0215 REMARK 3 T33: -0.0235 T12: -0.0083 REMARK 3 T13: -0.0055 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.2785 L22: 2.4926 REMARK 3 L33: 1.7101 L12: 0.5724 REMARK 3 L13: 0.3822 L23: -0.4642 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.1317 S13: -0.1356 REMARK 3 S21: -0.0905 S22: 0.0078 S23: -0.0411 REMARK 3 S31: 0.0354 S32: -0.2032 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 237 B 340 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3171 -11.6594 61.9712 REMARK 3 T TENSOR REMARK 3 T11: -0.0181 T22: 0.0092 REMARK 3 T33: -0.0245 T12: -0.0036 REMARK 3 T13: 0.0029 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.7001 L22: 0.4877 REMARK 3 L33: 0.8254 L12: -0.1700 REMARK 3 L13: 0.6188 L23: -0.1885 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0240 S13: -0.0431 REMARK 3 S21: 0.0624 S22: 0.0291 S23: -0.0212 REMARK 3 S31: -0.0281 S32: -0.0157 S33: -0.0178 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 341 B 444 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3104 -5.8207 30.5827 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: 0.0151 REMARK 3 T33: -0.0233 T12: -0.0052 REMARK 3 T13: -0.0054 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.2956 L22: 0.0896 REMARK 3 L33: 0.1378 L12: 0.0247 REMARK 3 L13: 0.0095 L23: 0.0613 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0260 S13: -0.0192 REMARK 3 S21: 0.0170 S22: -0.0110 S23: 0.0000 REMARK 3 S31: 0.0152 S32: -0.0258 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9479 -5.3792 58.7281 REMARK 3 T TENSOR REMARK 3 T11: -0.0425 T22: -0.0087 REMARK 3 T33: -0.0338 T12: -0.0131 REMARK 3 T13: 0.0122 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.6349 L22: 4.8181 REMARK 3 L33: 2.1660 L12: 3.5373 REMARK 3 L13: 0.8935 L23: 0.8398 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.1913 S13: -0.2520 REMARK 3 S21: 0.0914 S22: -0.2152 S23: 0.0810 REMARK 3 S31: -0.0186 S32: 0.0414 S33: 0.1440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000029742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67700 REMARK 200 R SYM FOR SHELL (I) : 0.73000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2DTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DEIONIZED WATER, 20% 2,3-BUTANEDIOL, REMARK 280 PH 7.0, MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.70950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.87900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.23550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.87900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.70950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.23550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 448 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 268 ND1 REMARK 620 2 HIS A 285 ND1 110.8 REMARK 620 3 HOH A 457 O 115.8 116.9 REMARK 620 4 HOH A 458 O 100.8 102.3 107.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H3X RELATED DB: PDB REMARK 900 THE HUMAN FC FRAGMENT WITH THE SAME GLYCOFORM. REMARK 900 RELATED ID: 2DTS RELATED DB: PDB REMARK 900 DEFUCOSYLATED FC FRAGMENT FROM HUMAN IMMUNOGLOBULIN G1. REMARK 900 RELATED ID: 1E4K RELATED DB: PDB REMARK 900 THE HUMAN FC FRAGMENT COMPLEXED WITH FC-GAMMA RECEPTOR III. REMARK 900 RELATED ID: 1T83 RELATED DB: PDB REMARK 900 THE HUMAN FC FRAGMENT COMPLEXED WITH FC-GAMMA RECEPTOR III. REMARK 900 RELATED ID: 1L6X RELATED DB: PDB REMARK 900 THE HUMAN FC FRAGMENT COMPLEXED WITH MINIMIZED B-DOMAIN PEPTIDE OF REMARK 900 PROTEIN A. REMARK 900 RELATED ID: 3D6G RELATED DB: PDB REMARK 900 THE HUMAN FC FRAGMENT COMPLEXED WITH PROTEIN A-MIMETIC PEPTIDE REMARK 900 DENDRIMER LIGAND. REMARK 900 RELATED ID: 1HZH RELATED DB: PDB REMARK 900 THE INTACT HUMAN IGG1 WHICH IS COMPOSED OF TWO FAB AND ONE FC REMARK 900 FRAGMENTS. DBREF 3AVE A 225 447 UNP P01857 IGHG1_HUMAN 108 330 DBREF 3AVE B 225 447 UNP P01857 IGHG1_HUMAN 108 330 SEQRES 1 A 223 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 223 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 223 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 223 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 223 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 223 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 223 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 223 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 223 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 223 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 223 ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 12 A 223 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 223 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 A 223 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 A 223 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 16 A 223 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 17 A 223 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 18 A 223 GLY LYS SEQRES 1 B 223 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 B 223 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 B 223 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 B 223 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 B 223 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 B 223 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 B 223 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 B 223 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 B 223 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 B 223 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 B 223 ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 12 B 223 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 B 223 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 B 223 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 B 223 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 16 B 223 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 17 B 223 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 18 B 223 GLY LYS MODRES 3AVE ASN B 297 ASN GLYCOSYLATION SITE MODRES 3AVE ASN A 297 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET NAG C 7 14 HET FUC C 8 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HET ZN A 448 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *249(H2 O) HELIX 1 1 LYS A 246 MET A 252 1 7 HELIX 2 2 LEU A 309 ASN A 315 1 7 HELIX 3 3 SER A 354 LYS A 360 5 7 HELIX 4 4 LYS A 414 GLN A 419 1 6 HELIX 5 5 LEU A 432 ASN A 434 5 3 HELIX 6 6 LYS B 246 MET B 252 1 7 HELIX 7 7 LEU B 309 ASN B 315 1 7 HELIX 8 8 SER B 354 LYS B 360 5 7 HELIX 9 9 LYS B 414 GLN B 419 1 6 HELIX 10 10 LEU B 432 ASN B 434 5 3 SHEET 1 A 4 SER A 239 PHE A 243 0 SHEET 2 A 4 GLU A 258 SER A 267 -1 O VAL A 262 N PHE A 241 SHEET 3 A 4 THR A 299 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 4 A 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 B 4 SER A 239 PHE A 243 0 SHEET 2 B 4 GLU A 258 SER A 267 -1 O VAL A 262 N PHE A 241 SHEET 3 B 4 THR A 299 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 4 B 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 C 4 VAL A 282 VAL A 284 0 SHEET 2 C 4 VAL A 273 VAL A 279 -1 N TRP A 277 O VAL A 284 SHEET 3 C 4 TYR A 319 ASN A 325 -1 O LYS A 322 N ASN A 276 SHEET 4 C 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 D 4 GLN A 347 LEU A 351 0 SHEET 2 D 4 GLN A 362 PHE A 372 -1 O LYS A 370 N GLN A 347 SHEET 3 D 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 D 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 E 4 GLN A 347 LEU A 351 0 SHEET 2 E 4 GLN A 362 PHE A 372 -1 O LYS A 370 N GLN A 347 SHEET 3 E 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 E 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 F 4 GLN A 386 PRO A 387 0 SHEET 2 F 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 F 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 F 4 TYR A 436 LEU A 441 -1 O LEU A 441 N PHE A 423 SHEET 1 G 4 SER B 239 PHE B 243 0 SHEET 2 G 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 G 4 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 G 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 H 4 SER B 239 PHE B 243 0 SHEET 2 H 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 H 4 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 H 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 I 4 VAL B 282 VAL B 284 0 SHEET 2 I 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 I 4 TYR B 319 SER B 324 -1 O LYS B 322 N ASN B 276 SHEET 4 I 4 ILE B 332 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 J 4 GLN B 347 LEU B 351 0 SHEET 2 J 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 J 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 J 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 K 4 GLN B 347 LEU B 351 0 SHEET 2 K 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 K 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 K 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 L 4 GLN B 386 PRO B 387 0 SHEET 2 L 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 L 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 L 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.02 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.04 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.08 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.41 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.43 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.43 LINK O2 MAN C 6 C1 NAG C 7 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.43 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.44 LINK ND1 HIS A 268 ZN ZN A 448 1555 1555 2.15 LINK ND1 HIS A 285 ZN ZN A 448 4456 1555 2.07 LINK ZN ZN A 448 O HOH A 457 1555 1555 2.01 LINK ZN ZN A 448 O HOH A 458 1555 1555 2.23 CISPEP 1 TYR A 373 PRO A 374 0 -7.76 CISPEP 2 TYR B 373 PRO B 374 0 -6.25 CRYST1 49.419 78.471 143.758 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006956 0.00000