data_3AXA # _entry.id 3AXA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AXA pdb_00003axa 10.2210/pdb3axa/pdb RCSB RCSB029810 ? ? WWPDB D_1000029810 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AXA _pdbx_database_status.recvd_initial_deposition_date 2011-03-31 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fujiwara, Y.' 1 'Goda, N.' 2 'Narita, H.' 3 'Satomura, K.' 4 'Nakagawa, A.' 5 'Sakisaka, T.' 6 'Suzuki, M.' 7 'Hiroaki, H.' 8 # _citation.id primary _citation.title 'Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 24 _citation.page_first 376 _citation.page_last 385 _citation.year 2015 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25534554 _citation.pdbx_database_id_DOI 10.1002/pro.2628 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujiwara, Y.' 1 ? primary 'Goda, N.' 2 ? primary 'Tamashiro, T.' 3 ? primary 'Narita, H.' 4 ? primary 'Satomura, K.' 5 ? primary 'Tenno, T.' 6 ? primary 'Nakagawa, A.' 7 ? primary 'Oda, M.' 8 ? primary 'Suzuki, M.' 9 ? primary 'Sakisaka, T.' 10 ? primary 'Takai, Y.' 11 ? primary 'Hiroaki, H.' 12 ? # _cell.entry_id 3AXA _cell.length_a 55.477 _cell.length_b 90.481 _cell.length_c 88.745 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AXA _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Afadin, Nectin-3' 11104.712 2 ? ? 'PDZ domain (UNP 1003-1095), C-terminal peptide (UNP 544-549)' 'The fusion protein of Afadin (1003-1095) and Nectin-3 (544-549)' 2 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein Af-6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA ELMTRTSSVVTLEVAKQGAIRREWYV ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA ELMTRTSSVVTLEVAKQGAIRREWYV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 HIS n 1 8 LYS n 1 9 GLU n 1 10 PRO n 1 11 GLU n 1 12 ILE n 1 13 ILE n 1 14 THR n 1 15 VAL n 1 16 THR n 1 17 LEU n 1 18 LYS n 1 19 LYS n 1 20 GLN n 1 21 ASN n 1 22 GLY n 1 23 MET n 1 24 GLY n 1 25 LEU n 1 26 SER n 1 27 ILE n 1 28 VAL n 1 29 ALA n 1 30 ALA n 1 31 LYS n 1 32 GLY n 1 33 ALA n 1 34 GLY n 1 35 GLN n 1 36 ASP n 1 37 LYS n 1 38 LEU n 1 39 GLY n 1 40 ILE n 1 41 TYR n 1 42 VAL n 1 43 LYS n 1 44 SER n 1 45 VAL n 1 46 VAL n 1 47 LYS n 1 48 GLY n 1 49 GLY n 1 50 ALA n 1 51 ALA n 1 52 ASP n 1 53 VAL n 1 54 ASP n 1 55 GLY n 1 56 ARG n 1 57 LEU n 1 58 ALA n 1 59 ALA n 1 60 GLY n 1 61 ASP n 1 62 GLN n 1 63 LEU n 1 64 LEU n 1 65 SER n 1 66 VAL n 1 67 ASP n 1 68 GLY n 1 69 ARG n 1 70 SER n 1 71 LEU n 1 72 VAL n 1 73 GLY n 1 74 LEU n 1 75 SER n 1 76 GLN n 1 77 GLU n 1 78 ARG n 1 79 ALA n 1 80 ALA n 1 81 GLU n 1 82 LEU n 1 83 MET n 1 84 THR n 1 85 ARG n 1 86 THR n 1 87 SER n 1 88 SER n 1 89 VAL n 1 90 VAL n 1 91 THR n 1 92 LEU n 1 93 GLU n 1 94 VAL n 1 95 ALA n 1 96 LYS n 1 97 GLN n 1 98 GLY n 1 99 ALA n 1 100 ILE n 1 101 ARG n 1 102 ARG n 1 103 GLU n 1 104 TRP n 1 105 TYR n 1 106 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 8 100 'mouse, mouse' ? 'Mllt4, Af6' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pGEX-6P3-PRESAT ? ? 1 2 sample ? 101 106 'mouse, mouse' ? 'Mllt4, Af6' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pGEX-6P3-PRESAT ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP AFAD_MOUSE Q9QZQ1 1 ;KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS SVVTLEVAKQGAI ; 1003 ? 2 UNP PVRL3_MOUSE Q9JLB9 1 RREWYV 544 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3AXA A 8 ? 100 ? Q9QZQ1 1003 ? 1095 ? -1 91 2 2 3AXA A 101 ? 106 ? Q9JLB9 544 ? 549 ? 92 97 3 1 3AXA B 8 ? 100 ? Q9QZQ1 1003 ? 1095 ? -1 91 4 2 3AXA B 101 ? 106 ? Q9JLB9 544 ? 549 ? 92 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3AXA GLY A 1 ? UNP Q9QZQ1 ? ? 'expression tag' -8 1 1 3AXA PRO A 2 ? UNP Q9QZQ1 ? ? 'expression tag' -7 2 1 3AXA LEU A 3 ? UNP Q9QZQ1 ? ? 'expression tag' -6 3 1 3AXA GLY A 4 ? UNP Q9QZQ1 ? ? 'expression tag' -5 4 1 3AXA SER A 5 ? UNP Q9QZQ1 ? ? 'expression tag' -4 5 1 3AXA ASP A 6 ? UNP Q9QZQ1 ? ? 'expression tag' -3 6 1 3AXA HIS A 7 ? UNP Q9QZQ1 ? ? 'expression tag' -2 7 2 3AXA GLY B 1 ? UNP Q9QZQ1 ? ? 'expression tag' -8 8 2 3AXA PRO B 2 ? UNP Q9QZQ1 ? ? 'expression tag' -7 9 2 3AXA LEU B 3 ? UNP Q9QZQ1 ? ? 'expression tag' -6 10 2 3AXA GLY B 4 ? UNP Q9QZQ1 ? ? 'expression tag' -5 11 2 3AXA SER B 5 ? UNP Q9QZQ1 ? ? 'expression tag' -4 12 2 3AXA ASP B 6 ? UNP Q9QZQ1 ? ? 'expression tag' -3 13 2 3AXA HIS B 7 ? UNP Q9QZQ1 ? ? 'expression tag' -2 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3AXA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 50.94 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-06-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3AXA _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.78 _reflns.number_obs 5357 _reflns.number_all 5641 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.78 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs 0.21 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.246 _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 255 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3AXA _refine.ls_number_reflns_obs 5357 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.29 _refine.ls_d_res_high 2.78 _refine.ls_percent_reflns_obs 95.26 _refine.ls_R_factor_obs 0.24133 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24032 _refine.ls_R_factor_R_free 0.26336 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 255 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.918 _refine.correlation_coeff_Fo_to_Fc_free 0.903 _refine.B_iso_mean 67.671 _refine.aniso_B[1][1] 6.75 _refine.aniso_B[2][2] -1.88 _refine.aniso_B[3][3] -4.87 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2FE5 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.391 _refine.overall_SU_ML 0.321 _refine.overall_SU_B 37.465 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1426 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1438 _refine_hist.d_res_high 2.78 _refine_hist.d_res_low 47.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1434 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.274 1.983 ? 1928 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.370 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.847 24.000 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.526 15.000 ? 270 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.259 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.065 0.200 ? 234 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1016 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.155 1.500 ? 948 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.226 2.000 ? 1504 'X-RAY DIFFRACTION' ? r_scbond_it 2.496 3.000 ? 486 'X-RAY DIFFRACTION' ? r_scangle_it 4.699 4.500 ? 424 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 713 0.03 0.05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 A 713 0.06 0.50 'tight thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.778 _refine_ls_shell.d_res_low 2.850 _refine_ls_shell.number_reflns_R_work 275 _refine_ls_shell.R_factor_R_work 0.335 _refine_ls_shell.percent_reflns_obs 68.88 _refine_ls_shell.R_factor_R_free 0.392 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A PRO 10 . A VAL 106 . A PRO 1 A VAL 97 1 ? 1 2 1 B PRO 10 . B VAL 106 . B PRO 1 B VAL 97 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3AXA _struct.title 'Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AXA _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'PDZ domain, AF-6, fusion protein, cell adhesion' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 49 ? GLY A 55 ? GLY A 40 GLY A 46 1 ? 7 HELX_P HELX_P2 2 SER A 75 ? ARG A 85 ? SER A 66 ARG A 76 1 ? 11 HELX_P HELX_P3 3 GLY B 49 ? GLY B 55 ? GLY B 40 GLY B 46 1 ? 7 HELX_P HELX_P4 4 SER B 75 ? ARG B 85 ? SER B 66 ARG B 76 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 12 ? LYS A 18 ? ILE A 3 LYS A 9 A 2 VAL A 89 ? ALA A 95 ? VAL A 80 ALA A 86 A 3 GLN A 62 ? VAL A 66 ? GLN A 53 VAL A 57 A 4 LEU A 38 ? VAL A 45 ? LEU A 29 VAL A 36 A 5 LEU A 25 ? LYS A 31 ? LEU A 16 LYS A 22 B 1 ILE A 12 ? LYS A 18 ? ILE A 3 LYS A 9 B 2 VAL A 89 ? ALA A 95 ? VAL A 80 ALA A 86 B 3 GLN A 62 ? VAL A 66 ? GLN A 53 VAL A 57 B 4 ARG A 69 ? SER A 70 ? ARG A 60 SER A 61 C 1 ILE B 12 ? LYS B 18 ? ILE B 3 LYS B 9 C 2 VAL B 89 ? ALA B 95 ? VAL B 80 ALA B 86 C 3 GLN B 62 ? VAL B 66 ? GLN B 53 VAL B 57 C 4 LEU B 38 ? VAL B 45 ? LEU B 29 VAL B 36 C 5 LEU B 25 ? LYS B 31 ? LEU B 16 LYS B 22 D 1 ILE B 12 ? LYS B 18 ? ILE B 3 LYS B 9 D 2 VAL B 89 ? ALA B 95 ? VAL B 80 ALA B 86 D 3 GLN B 62 ? VAL B 66 ? GLN B 53 VAL B 57 D 4 ARG B 69 ? SER B 70 ? ARG B 60 SER B 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 15 ? N VAL A 6 O LEU A 92 ? O LEU A 83 A 2 3 O ALA A 95 ? O ALA A 86 N GLN A 62 ? N GLN A 53 A 3 4 O LEU A 63 ? O LEU A 54 N ILE A 40 ? N ILE A 31 A 4 5 O GLY A 39 ? O GLY A 30 N ALA A 30 ? N ALA A 21 B 1 2 N VAL A 15 ? N VAL A 6 O LEU A 92 ? O LEU A 83 B 2 3 O ALA A 95 ? O ALA A 86 N GLN A 62 ? N GLN A 53 B 3 4 N VAL A 66 ? N VAL A 57 O ARG A 69 ? O ARG A 60 C 1 2 N VAL B 15 ? N VAL B 6 O LEU B 92 ? O LEU B 83 C 2 3 O ALA B 95 ? O ALA B 86 N GLN B 62 ? N GLN B 53 C 3 4 O LEU B 63 ? O LEU B 54 N ILE B 40 ? N ILE B 31 C 4 5 O GLY B 39 ? O GLY B 30 N ALA B 30 ? N ALA B 21 D 1 2 N VAL B 15 ? N VAL B 6 O LEU B 92 ? O LEU B 83 D 2 3 O ALA B 95 ? O ALA B 86 N GLN B 62 ? N GLN B 53 D 3 4 N VAL B 66 ? N VAL B 57 O ARG B 69 ? O ARG B 60 # _database_PDB_matrix.entry_id 3AXA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AXA _atom_sites.fract_transf_matrix[1][1] 0.018025 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011052 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011268 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -8 ? ? ? A . n A 1 2 PRO 2 -7 ? ? ? A . n A 1 3 LEU 3 -6 ? ? ? A . n A 1 4 GLY 4 -5 ? ? ? A . n A 1 5 SER 5 -4 ? ? ? A . n A 1 6 ASP 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 LYS 8 -1 ? ? ? A . n A 1 9 GLU 9 0 ? ? ? A . n A 1 10 PRO 10 1 1 PRO PRO A . n A 1 11 GLU 11 2 2 GLU GLU A . n A 1 12 ILE 12 3 3 ILE ILE A . n A 1 13 ILE 13 4 4 ILE ILE A . n A 1 14 THR 14 5 5 THR THR A . n A 1 15 VAL 15 6 6 VAL VAL A . n A 1 16 THR 16 7 7 THR THR A . n A 1 17 LEU 17 8 8 LEU LEU A . n A 1 18 LYS 18 9 9 LYS LYS A . n A 1 19 LYS 19 10 10 LYS LYS A . n A 1 20 GLN 20 11 11 GLN GLN A . n A 1 21 ASN 21 12 12 ASN ASN A . n A 1 22 GLY 22 13 13 GLY GLY A . n A 1 23 MET 23 14 14 MET MET A . n A 1 24 GLY 24 15 15 GLY GLY A . n A 1 25 LEU 25 16 16 LEU LEU A . n A 1 26 SER 26 17 17 SER SER A . n A 1 27 ILE 27 18 18 ILE ILE A . n A 1 28 VAL 28 19 19 VAL VAL A . n A 1 29 ALA 29 20 20 ALA ALA A . n A 1 30 ALA 30 21 21 ALA ALA A . n A 1 31 LYS 31 22 22 LYS LYS A . n A 1 32 GLY 32 23 23 GLY GLY A . n A 1 33 ALA 33 24 24 ALA ALA A . n A 1 34 GLY 34 25 25 GLY GLY A . n A 1 35 GLN 35 26 26 GLN GLN A . n A 1 36 ASP 36 27 27 ASP ASP A . n A 1 37 LYS 37 28 28 LYS LYS A . n A 1 38 LEU 38 29 29 LEU LEU A . n A 1 39 GLY 39 30 30 GLY GLY A . n A 1 40 ILE 40 31 31 ILE ILE A . n A 1 41 TYR 41 32 32 TYR TYR A . n A 1 42 VAL 42 33 33 VAL VAL A . n A 1 43 LYS 43 34 34 LYS LYS A . n A 1 44 SER 44 35 35 SER SER A . n A 1 45 VAL 45 36 36 VAL VAL A . n A 1 46 VAL 46 37 37 VAL VAL A . n A 1 47 LYS 47 38 38 LYS LYS A . n A 1 48 GLY 48 39 39 GLY GLY A . n A 1 49 GLY 49 40 40 GLY GLY A . n A 1 50 ALA 50 41 41 ALA ALA A . n A 1 51 ALA 51 42 42 ALA ALA A . n A 1 52 ASP 52 43 43 ASP ASP A . n A 1 53 VAL 53 44 44 VAL VAL A . n A 1 54 ASP 54 45 45 ASP ASP A . n A 1 55 GLY 55 46 46 GLY GLY A . n A 1 56 ARG 56 47 47 ARG ARG A . n A 1 57 LEU 57 48 48 LEU LEU A . n A 1 58 ALA 58 49 49 ALA ALA A . n A 1 59 ALA 59 50 50 ALA ALA A . n A 1 60 GLY 60 51 51 GLY GLY A . n A 1 61 ASP 61 52 52 ASP ASP A . n A 1 62 GLN 62 53 53 GLN GLN A . n A 1 63 LEU 63 54 54 LEU LEU A . n A 1 64 LEU 64 55 55 LEU LEU A . n A 1 65 SER 65 56 56 SER SER A . n A 1 66 VAL 66 57 57 VAL VAL A . n A 1 67 ASP 67 58 58 ASP ASP A . n A 1 68 GLY 68 59 59 GLY GLY A . n A 1 69 ARG 69 60 60 ARG ARG A . n A 1 70 SER 70 61 61 SER SER A . n A 1 71 LEU 71 62 62 LEU LEU A . n A 1 72 VAL 72 63 63 VAL VAL A . n A 1 73 GLY 73 64 64 GLY GLY A . n A 1 74 LEU 74 65 65 LEU LEU A . n A 1 75 SER 75 66 66 SER SER A . n A 1 76 GLN 76 67 67 GLN GLN A . n A 1 77 GLU 77 68 68 GLU GLU A . n A 1 78 ARG 78 69 69 ARG ARG A . n A 1 79 ALA 79 70 70 ALA ALA A . n A 1 80 ALA 80 71 71 ALA ALA A . n A 1 81 GLU 81 72 72 GLU GLU A . n A 1 82 LEU 82 73 73 LEU LEU A . n A 1 83 MET 83 74 74 MET MET A . n A 1 84 THR 84 75 75 THR THR A . n A 1 85 ARG 85 76 76 ARG ARG A . n A 1 86 THR 86 77 77 THR THR A . n A 1 87 SER 87 78 78 SER SER A . n A 1 88 SER 88 79 79 SER SER A . n A 1 89 VAL 89 80 80 VAL VAL A . n A 1 90 VAL 90 81 81 VAL VAL A . n A 1 91 THR 91 82 82 THR THR A . n A 1 92 LEU 92 83 83 LEU LEU A . n A 1 93 GLU 93 84 84 GLU GLU A . n A 1 94 VAL 94 85 85 VAL VAL A . n A 1 95 ALA 95 86 86 ALA ALA A . n A 1 96 LYS 96 87 87 LYS LYS A . n A 1 97 GLN 97 88 88 GLN GLN A . n A 1 98 GLY 98 89 89 GLY GLY A . n A 1 99 ALA 99 90 90 ALA ALA A . n A 1 100 ILE 100 91 91 ILE ILE A . n A 1 101 ARG 101 92 92 ARG ARG A . n A 1 102 ARG 102 93 93 ARG ARG A . n A 1 103 GLU 103 94 94 GLU GLU A . n A 1 104 TRP 104 95 95 TRP TRP A . n A 1 105 TYR 105 96 96 TYR TYR A . n A 1 106 VAL 106 97 97 VAL VAL A . n B 1 1 GLY 1 -8 ? ? ? B . n B 1 2 PRO 2 -7 ? ? ? B . n B 1 3 LEU 3 -6 ? ? ? B . n B 1 4 GLY 4 -5 ? ? ? B . n B 1 5 SER 5 -4 ? ? ? B . n B 1 6 ASP 6 -3 ? ? ? B . n B 1 7 HIS 7 -2 ? ? ? B . n B 1 8 LYS 8 -1 ? ? ? B . n B 1 9 GLU 9 0 ? ? ? B . n B 1 10 PRO 10 1 1 PRO PRO B . n B 1 11 GLU 11 2 2 GLU GLU B . n B 1 12 ILE 12 3 3 ILE ILE B . n B 1 13 ILE 13 4 4 ILE ILE B . n B 1 14 THR 14 5 5 THR THR B . n B 1 15 VAL 15 6 6 VAL VAL B . n B 1 16 THR 16 7 7 THR THR B . n B 1 17 LEU 17 8 8 LEU LEU B . n B 1 18 LYS 18 9 9 LYS LYS B . n B 1 19 LYS 19 10 10 LYS LYS B . n B 1 20 GLN 20 11 11 GLN GLN B . n B 1 21 ASN 21 12 12 ASN ASN B . n B 1 22 GLY 22 13 13 GLY GLY B . n B 1 23 MET 23 14 14 MET MET B . n B 1 24 GLY 24 15 15 GLY GLY B . n B 1 25 LEU 25 16 16 LEU LEU B . n B 1 26 SER 26 17 17 SER SER B . n B 1 27 ILE 27 18 18 ILE ILE B . n B 1 28 VAL 28 19 19 VAL VAL B . n B 1 29 ALA 29 20 20 ALA ALA B . n B 1 30 ALA 30 21 21 ALA ALA B . n B 1 31 LYS 31 22 22 LYS LYS B . n B 1 32 GLY 32 23 23 GLY GLY B . n B 1 33 ALA 33 24 24 ALA ALA B . n B 1 34 GLY 34 25 25 GLY GLY B . n B 1 35 GLN 35 26 26 GLN GLN B . n B 1 36 ASP 36 27 27 ASP ASP B . n B 1 37 LYS 37 28 28 LYS LYS B . n B 1 38 LEU 38 29 29 LEU LEU B . n B 1 39 GLY 39 30 30 GLY GLY B . n B 1 40 ILE 40 31 31 ILE ILE B . n B 1 41 TYR 41 32 32 TYR TYR B . n B 1 42 VAL 42 33 33 VAL VAL B . n B 1 43 LYS 43 34 34 LYS LYS B . n B 1 44 SER 44 35 35 SER SER B . n B 1 45 VAL 45 36 36 VAL VAL B . n B 1 46 VAL 46 37 37 VAL VAL B . n B 1 47 LYS 47 38 38 LYS LYS B . n B 1 48 GLY 48 39 39 GLY GLY B . n B 1 49 GLY 49 40 40 GLY GLY B . n B 1 50 ALA 50 41 41 ALA ALA B . n B 1 51 ALA 51 42 42 ALA ALA B . n B 1 52 ASP 52 43 43 ASP ASP B . n B 1 53 VAL 53 44 44 VAL VAL B . n B 1 54 ASP 54 45 45 ASP ASP B . n B 1 55 GLY 55 46 46 GLY GLY B . n B 1 56 ARG 56 47 47 ARG ARG B . n B 1 57 LEU 57 48 48 LEU LEU B . n B 1 58 ALA 58 49 49 ALA ALA B . n B 1 59 ALA 59 50 50 ALA ALA B . n B 1 60 GLY 60 51 51 GLY GLY B . n B 1 61 ASP 61 52 52 ASP ASP B . n B 1 62 GLN 62 53 53 GLN GLN B . n B 1 63 LEU 63 54 54 LEU LEU B . n B 1 64 LEU 64 55 55 LEU LEU B . n B 1 65 SER 65 56 56 SER SER B . n B 1 66 VAL 66 57 57 VAL VAL B . n B 1 67 ASP 67 58 58 ASP ASP B . n B 1 68 GLY 68 59 59 GLY GLY B . n B 1 69 ARG 69 60 60 ARG ARG B . n B 1 70 SER 70 61 61 SER SER B . n B 1 71 LEU 71 62 62 LEU LEU B . n B 1 72 VAL 72 63 63 VAL VAL B . n B 1 73 GLY 73 64 64 GLY GLY B . n B 1 74 LEU 74 65 65 LEU LEU B . n B 1 75 SER 75 66 66 SER SER B . n B 1 76 GLN 76 67 67 GLN GLN B . n B 1 77 GLU 77 68 68 GLU GLU B . n B 1 78 ARG 78 69 69 ARG ARG B . n B 1 79 ALA 79 70 70 ALA ALA B . n B 1 80 ALA 80 71 71 ALA ALA B . n B 1 81 GLU 81 72 72 GLU GLU B . n B 1 82 LEU 82 73 73 LEU LEU B . n B 1 83 MET 83 74 74 MET MET B . n B 1 84 THR 84 75 75 THR THR B . n B 1 85 ARG 85 76 76 ARG ARG B . n B 1 86 THR 86 77 77 THR THR B . n B 1 87 SER 87 78 78 SER SER B . n B 1 88 SER 88 79 79 SER SER B . n B 1 89 VAL 89 80 80 VAL VAL B . n B 1 90 VAL 90 81 81 VAL VAL B . n B 1 91 THR 91 82 82 THR THR B . n B 1 92 LEU 92 83 83 LEU LEU B . n B 1 93 GLU 93 84 84 GLU GLU B . n B 1 94 VAL 94 85 85 VAL VAL B . n B 1 95 ALA 95 86 86 ALA ALA B . n B 1 96 LYS 96 87 87 LYS LYS B . n B 1 97 GLN 97 88 88 GLN GLN B . n B 1 98 GLY 98 89 89 GLY GLY B . n B 1 99 ALA 99 90 90 ALA ALA B . n B 1 100 ILE 100 91 91 ILE ILE B . n B 1 101 ARG 101 92 92 ARG ARG B . n B 1 102 ARG 102 93 93 ARG ARG B . n B 1 103 GLU 103 94 94 GLU GLU B . n B 1 104 TRP 104 95 95 TRP TRP B . n B 1 105 TYR 105 96 96 TYR TYR B . n B 1 106 VAL 106 97 97 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 98 7 HOH HOH A . C 2 HOH 2 99 9 HOH HOH A . C 2 HOH 3 100 10 HOH HOH A . C 2 HOH 4 101 23 HOH HOH A . C 2 HOH 5 102 32 HOH HOH A . C 2 HOH 6 103 35 HOH HOH A . C 2 HOH 7 104 45 HOH HOH A . C 2 HOH 8 105 54 HOH HOH A . D 2 HOH 1 98 1 HOH HOH B . D 2 HOH 2 99 4 HOH HOH B . D 2 HOH 3 100 8 HOH HOH B . D 2 HOH 4 101 17 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C 2 1,3 B,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2140 ? 1 MORE -10 ? 1 'SSA (A^2)' 10590 ? 2 'ABSA (A^2)' 2140 ? 2 MORE -10 ? 2 'SSA (A^2)' 10590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 55.4770000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 44.3725000000 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 88.7450000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2015-03-11 3 'Structure model' 1 2 2017-08-23 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_ncs_dom_lim 8 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 4 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 5 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 6 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 7 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 8 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 9 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 10 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 11 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 35.6578 -12.2581 30.4247 0.4156 0.4078 0.2231 0.2382 0.0055 0.0354 2.3424 1.0911 3.1389 0.8938 0.4364 -0.9961 -0.0413 -0.2094 -0.0289 -0.0929 -0.0297 -0.0247 0.6190 0.5937 0.0710 'X-RAY DIFFRACTION' 2 ? refined 15.2484 8.0617 36.1789 0.5431 0.3407 0.2084 0.2885 -0.0714 -0.0094 0.1777 2.3538 5.7369 0.3188 0.8769 0.9618 -0.0065 -0.1444 -0.0444 -0.2341 -0.1756 -0.1274 -0.9508 -1.0385 0.1820 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 97 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 97 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 BALBES phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 96 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OH _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 TYR _pdbx_validate_symm_contact.auth_seq_id_2 96 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_654 _pdbx_validate_symm_contact.dist 1.76 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 11 ? ? -79.20 -97.24 2 1 GLN B 11 ? ? -76.03 -101.28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -8 ? A GLY 1 2 1 Y 1 A PRO -7 ? A PRO 2 3 1 Y 1 A LEU -6 ? A LEU 3 4 1 Y 1 A GLY -5 ? A GLY 4 5 1 Y 1 A SER -4 ? A SER 5 6 1 Y 1 A ASP -3 ? A ASP 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A LYS -1 ? A LYS 8 9 1 Y 1 A GLU 0 ? A GLU 9 10 1 Y 1 B GLY -8 ? B GLY 1 11 1 Y 1 B PRO -7 ? B PRO 2 12 1 Y 1 B LEU -6 ? B LEU 3 13 1 Y 1 B GLY -5 ? B GLY 4 14 1 Y 1 B SER -4 ? B SER 5 15 1 Y 1 B ASP -3 ? B ASP 6 16 1 Y 1 B HIS -2 ? B HIS 7 17 1 Y 1 B LYS -1 ? B LYS 8 18 1 Y 1 B GLU 0 ? B GLU 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PRO N N N N 236 PRO CA C N S 237 PRO C C N N 238 PRO O O N N 239 PRO CB C N N 240 PRO CG C N N 241 PRO CD C N N 242 PRO OXT O N N 243 PRO H H N N 244 PRO HA H N N 245 PRO HB2 H N N 246 PRO HB3 H N N 247 PRO HG2 H N N 248 PRO HG3 H N N 249 PRO HD2 H N N 250 PRO HD3 H N N 251 PRO HXT H N N 252 SER N N N N 253 SER CA C N S 254 SER C C N N 255 SER O O N N 256 SER CB C N N 257 SER OG O N N 258 SER OXT O N N 259 SER H H N N 260 SER H2 H N N 261 SER HA H N N 262 SER HB2 H N N 263 SER HB3 H N N 264 SER HG H N N 265 SER HXT H N N 266 THR N N N N 267 THR CA C N S 268 THR C C N N 269 THR O O N N 270 THR CB C N R 271 THR OG1 O N N 272 THR CG2 C N N 273 THR OXT O N N 274 THR H H N N 275 THR H2 H N N 276 THR HA H N N 277 THR HB H N N 278 THR HG1 H N N 279 THR HG21 H N N 280 THR HG22 H N N 281 THR HG23 H N N 282 THR HXT H N N 283 TRP N N N N 284 TRP CA C N S 285 TRP C C N N 286 TRP O O N N 287 TRP CB C N N 288 TRP CG C Y N 289 TRP CD1 C Y N 290 TRP CD2 C Y N 291 TRP NE1 N Y N 292 TRP CE2 C Y N 293 TRP CE3 C Y N 294 TRP CZ2 C Y N 295 TRP CZ3 C Y N 296 TRP CH2 C Y N 297 TRP OXT O N N 298 TRP H H N N 299 TRP H2 H N N 300 TRP HA H N N 301 TRP HB2 H N N 302 TRP HB3 H N N 303 TRP HD1 H N N 304 TRP HE1 H N N 305 TRP HE3 H N N 306 TRP HZ2 H N N 307 TRP HZ3 H N N 308 TRP HH2 H N N 309 TRP HXT H N N 310 TYR N N N N 311 TYR CA C N S 312 TYR C C N N 313 TYR O O N N 314 TYR CB C N N 315 TYR CG C Y N 316 TYR CD1 C Y N 317 TYR CD2 C Y N 318 TYR CE1 C Y N 319 TYR CE2 C Y N 320 TYR CZ C Y N 321 TYR OH O N N 322 TYR OXT O N N 323 TYR H H N N 324 TYR H2 H N N 325 TYR HA H N N 326 TYR HB2 H N N 327 TYR HB3 H N N 328 TYR HD1 H N N 329 TYR HD2 H N N 330 TYR HE1 H N N 331 TYR HE2 H N N 332 TYR HH H N N 333 TYR HXT H N N 334 VAL N N N N 335 VAL CA C N S 336 VAL C C N N 337 VAL O O N N 338 VAL CB C N N 339 VAL CG1 C N N 340 VAL CG2 C N N 341 VAL OXT O N N 342 VAL H H N N 343 VAL H2 H N N 344 VAL HA H N N 345 VAL HB H N N 346 VAL HG11 H N N 347 VAL HG12 H N N 348 VAL HG13 H N N 349 VAL HG21 H N N 350 VAL HG22 H N N 351 VAL HG23 H N N 352 VAL HXT H N N 353 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PRO N CA sing N N 224 PRO N CD sing N N 225 PRO N H sing N N 226 PRO CA C sing N N 227 PRO CA CB sing N N 228 PRO CA HA sing N N 229 PRO C O doub N N 230 PRO C OXT sing N N 231 PRO CB CG sing N N 232 PRO CB HB2 sing N N 233 PRO CB HB3 sing N N 234 PRO CG CD sing N N 235 PRO CG HG2 sing N N 236 PRO CG HG3 sing N N 237 PRO CD HD2 sing N N 238 PRO CD HD3 sing N N 239 PRO OXT HXT sing N N 240 SER N CA sing N N 241 SER N H sing N N 242 SER N H2 sing N N 243 SER CA C sing N N 244 SER CA CB sing N N 245 SER CA HA sing N N 246 SER C O doub N N 247 SER C OXT sing N N 248 SER CB OG sing N N 249 SER CB HB2 sing N N 250 SER CB HB3 sing N N 251 SER OG HG sing N N 252 SER OXT HXT sing N N 253 THR N CA sing N N 254 THR N H sing N N 255 THR N H2 sing N N 256 THR CA C sing N N 257 THR CA CB sing N N 258 THR CA HA sing N N 259 THR C O doub N N 260 THR C OXT sing N N 261 THR CB OG1 sing N N 262 THR CB CG2 sing N N 263 THR CB HB sing N N 264 THR OG1 HG1 sing N N 265 THR CG2 HG21 sing N N 266 THR CG2 HG22 sing N N 267 THR CG2 HG23 sing N N 268 THR OXT HXT sing N N 269 TRP N CA sing N N 270 TRP N H sing N N 271 TRP N H2 sing N N 272 TRP CA C sing N N 273 TRP CA CB sing N N 274 TRP CA HA sing N N 275 TRP C O doub N N 276 TRP C OXT sing N N 277 TRP CB CG sing N N 278 TRP CB HB2 sing N N 279 TRP CB HB3 sing N N 280 TRP CG CD1 doub Y N 281 TRP CG CD2 sing Y N 282 TRP CD1 NE1 sing Y N 283 TRP CD1 HD1 sing N N 284 TRP CD2 CE2 doub Y N 285 TRP CD2 CE3 sing Y N 286 TRP NE1 CE2 sing Y N 287 TRP NE1 HE1 sing N N 288 TRP CE2 CZ2 sing Y N 289 TRP CE3 CZ3 doub Y N 290 TRP CE3 HE3 sing N N 291 TRP CZ2 CH2 doub Y N 292 TRP CZ2 HZ2 sing N N 293 TRP CZ3 CH2 sing Y N 294 TRP CZ3 HZ3 sing N N 295 TRP CH2 HH2 sing N N 296 TRP OXT HXT sing N N 297 TYR N CA sing N N 298 TYR N H sing N N 299 TYR N H2 sing N N 300 TYR CA C sing N N 301 TYR CA CB sing N N 302 TYR CA HA sing N N 303 TYR C O doub N N 304 TYR C OXT sing N N 305 TYR CB CG sing N N 306 TYR CB HB2 sing N N 307 TYR CB HB3 sing N N 308 TYR CG CD1 doub Y N 309 TYR CG CD2 sing Y N 310 TYR CD1 CE1 sing Y N 311 TYR CD1 HD1 sing N N 312 TYR CD2 CE2 doub Y N 313 TYR CD2 HD2 sing N N 314 TYR CE1 CZ doub Y N 315 TYR CE1 HE1 sing N N 316 TYR CE2 CZ sing Y N 317 TYR CE2 HE2 sing N N 318 TYR CZ OH sing N N 319 TYR OH HH sing N N 320 TYR OXT HXT sing N N 321 VAL N CA sing N N 322 VAL N H sing N N 323 VAL N H2 sing N N 324 VAL CA C sing N N 325 VAL CA CB sing N N 326 VAL CA HA sing N N 327 VAL C O doub N N 328 VAL C OXT sing N N 329 VAL CB CG1 sing N N 330 VAL CB CG2 sing N N 331 VAL CB HB sing N N 332 VAL CG1 HG11 sing N N 333 VAL CG1 HG12 sing N N 334 VAL CG1 HG13 sing N N 335 VAL CG2 HG21 sing N N 336 VAL CG2 HG22 sing N N 337 VAL CG2 HG23 sing N N 338 VAL OXT HXT sing N N 339 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FE5 _pdbx_initial_refinement_model.details ? #