HEADER LYASE 11-APR-11 3AXK TITLE STRUCTURE OF RICE RUBISCO IN COMPLEX WITH NADP(H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RUBISCO LARGE SUBUNIT, D-RIBULOSE 1,5-BISPHOSPHATE COMPND 5 CARBOXYLASE/OXYGENASE LARGE SUBUNIT; COMPND 6 EC: 4.1.1.39; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN, COMPND 9 CHLOROPLASTIC; COMPND 10 CHAIN: S, T; COMPND 11 SYNONYM: RUBISCO SMALL SUBUNIT, D-RIBULOSE 1,5-BISPHOSPHATE COMPND 12 CARBOXYLASE/OXYGENASE SMALL SUBUNIT; COMPND 13 EC: 4.1.1.39 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 TISSUE: LEAVES; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 8 ORGANISM_COMMON: JAPANESE RICE; SOURCE 9 ORGANISM_TAXID: 39947; SOURCE 10 TISSUE: LEAVES KEYWDS ALPHA/BETA BARREL, PHOTOSYNTHETIC CARBON REDUCTION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MATSUMURA,E.MIZOHATA,H.ISHIDA,A.KOGAMI,T.UENO,A.MAKINO,T.INOUE, AUTHOR 2 A.YOKOTA,T.MAE,Y.KAI REVDAT 3 05-JUN-13 3AXK 1 JRNL REVDAT 2 13-JUN-12 3AXK 1 JRNL REVDAT 1 11-APR-12 3AXK 0 JRNL AUTH H.MATSUMURA,E.MIZOHATA,H.ISHIDA,A.KOGAMI,T.UENO,A.MAKINO, JRNL AUTH 2 T.INOUE,A.YOKOTA,T.MAE,Y.KAI JRNL TITL CRYSTAL STRUCTURE OF RICE RUBISCO AND IMPLICATIONS FOR JRNL TITL 2 ACTIVATION INDUCED BY POSITIVE EFFECTORS NADPH AND JRNL TITL 3 6-PHOSPHOGLUCONATE JRNL REF J.MOL.BIOL. V. 422 75 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22609438 JRNL DOI 10.1016/J.JMB.2012.05.014 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 369893.340 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 88564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 3848 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 13812 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 103 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 1125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.79 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.850 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 67.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : RUB.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : RUB.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB029820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 10.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75MM HEPES-KOH (PH 7.75), 9% PEG4000, REMARK 280 25% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.12300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.88400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.12300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.88400 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 55.12300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 99.88400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 55.12300 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 99.88400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 91580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 118410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -356.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 110.24600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 110.24600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 110.24600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 110.24600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 12 REMARK 465 PHE A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 LYS A 18 REMARK 465 ASP A 19 REMARK 465 GLY A 64 REMARK 465 THR A 65 REMARK 465 TRP A 66 REMARK 465 THR A 67 REMARK 465 GLY A 333 REMARK 465 LYS A 334 REMARK 465 LEU A 335 REMARK 465 GLU A 336 REMARK 465 GLY A 337 REMARK 465 LYS A 463 REMARK 465 ALA A 464 REMARK 465 ILE A 465 REMARK 465 LYS A 466 REMARK 465 PHE A 467 REMARK 465 GLU A 468 REMARK 465 PHE A 469 REMARK 465 GLU A 470 REMARK 465 PRO A 471 REMARK 465 VAL A 472 REMARK 465 ASP A 473 REMARK 465 LYS A 474 REMARK 465 LEU A 475 REMARK 465 ASP A 476 REMARK 465 SER A 477 REMARK 465 GLY S 122 REMARK 465 CYS S 123 REMARK 465 GLU S 124 REMARK 465 GLU S 125 REMARK 465 SER S 126 REMARK 465 GLY S 127 REMARK 465 GLY S 128 REMARK 465 ASN S 129 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 LYS B 8 REMARK 465 ALA B 9 REMARK 465 SER B 10 REMARK 465 VAL B 11 REMARK 465 GLY B 12 REMARK 465 PHE B 13 REMARK 465 LYS B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 465 VAL B 17 REMARK 465 LYS B 18 REMARK 465 ASP B 19 REMARK 465 TYR B 20 REMARK 465 GLY B 64 REMARK 465 THR B 65 REMARK 465 TRP B 66 REMARK 465 THR B 67 REMARK 465 THR B 68 REMARK 465 VAL B 69 REMARK 465 VAL B 331 REMARK 465 VAL B 332 REMARK 465 GLY B 333 REMARK 465 LYS B 334 REMARK 465 LEU B 335 REMARK 465 GLU B 336 REMARK 465 GLY B 337 REMARK 465 ALA B 464 REMARK 465 ILE B 465 REMARK 465 LYS B 466 REMARK 465 PHE B 467 REMARK 465 GLU B 468 REMARK 465 PHE B 469 REMARK 465 GLU B 470 REMARK 465 PRO B 471 REMARK 465 VAL B 472 REMARK 465 ASP B 473 REMARK 465 LYS B 474 REMARK 465 LEU B 475 REMARK 465 ASP B 476 REMARK 465 SER B 477 REMARK 465 PRO T 121 REMARK 465 GLY T 122 REMARK 465 CYS T 123 REMARK 465 GLU T 124 REMARK 465 GLU T 125 REMARK 465 SER T 126 REMARK 465 GLY T 127 REMARK 465 GLY T 128 REMARK 465 ASN T 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 20 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 NME S 0 N REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 NME T 0 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 203 O HOH B 1112 2.05 REMARK 500 N ILE B 382 O HOH B 1125 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 22 CA - CB - CG ANGL. DEV. = -23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 62 -114.32 -151.81 REMARK 500 HIS A 86 138.42 -171.12 REMARK 500 ASP A 94 102.77 -7.33 REMARK 500 ASN A 123 -38.02 -130.67 REMARK 500 HIS A 153 -53.66 -135.87 REMARK 500 ASN A 207 -86.07 -121.96 REMARK 500 MET A 212 101.30 -161.01 REMARK 500 TYR A 239 99.96 -67.72 REMARK 500 MET A 297 -0.60 80.52 REMARK 500 ASP A 357 83.46 -160.96 REMARK 500 VAL A 369 55.17 36.60 REMARK 500 GLU S 13 -149.77 60.93 REMARK 500 LEU S 15 -9.36 88.62 REMARK 500 LYS S 71 -126.13 56.64 REMARK 500 SER S 114 112.93 -172.19 REMARK 500 LEU B 22 -138.01 -164.69 REMARK 500 SER B 62 -86.24 -145.23 REMARK 500 THR B 75 -169.19 -160.08 REMARK 500 HIS B 153 -53.15 -135.59 REMARK 500 ASN B 207 -85.67 -121.45 REMARK 500 TYR B 239 98.20 -67.90 REMARK 500 MET B 297 -1.61 79.59 REMARK 500 ASP B 357 95.29 -161.19 REMARK 500 VAL B 369 55.81 35.19 REMARK 500 THR B 406 -54.47 -125.32 REMARK 500 GLU T 13 -145.84 62.56 REMARK 500 LEU T 15 -5.60 84.07 REMARK 500 LYS T 71 -129.56 58.61 REMARK 500 SER T 114 112.13 -174.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 912 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 993 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH S 763 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH S1013 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH T 595 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH T 960 DISTANCE = 5.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 478 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 204 OE1 REMARK 620 2 KCX A 201 OQ1 84.7 REMARK 620 3 ASP A 203 OD2 87.0 94.9 REMARK 620 4 KCX A 201 OQ2 104.7 45.4 135.4 REMARK 620 5 HOH A 616 O 160.1 105.2 75.2 94.2 REMARK 620 6 HOH A 693 O 95.5 102.5 162.5 60.6 98.9 REMARK 620 7 HOH A 901 O 88.0 172.3 87.1 135.2 82.5 75.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 478 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 204 OE1 REMARK 620 2 KCX B 201 OQ1 78.0 REMARK 620 3 ASP B 203 OD2 97.5 96.5 REMARK 620 4 HOH B 855 O 169.4 111.7 77.6 REMARK 620 5 HOH B 787 O 93.5 83.6 168.7 91.9 REMARK 620 6 HOH B 734 O 93.1 171.1 84.3 77.1 97.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 478 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WDD RELATED DB: PDB REMARK 900 STRUCTURE OF RICE RUBISCO IN COMPLEX WITH CABP REMARK 900 RELATED ID: 3AXM RELATED DB: PDB REMARK 900 STRUCTURE OF RICE RUBISCO IN COMPLEX WITH 6PG DBREF 3AXK A 1 477 UNP P0C512 RBL_ORYSJ 1 477 DBREF 3AXK S 1 129 UNP Q0INY7 RBS1_ORYSJ 48 175 DBREF 3AXK B 1 477 UNP P0C512 RBL_ORYSJ 1 477 DBREF 3AXK T 1 129 UNP Q0INY7 RBS1_ORYSJ 48 175 SEQADV 3AXK NME S 0 UNP Q0INY7 AMIDATION SEQADV 3AXK CYS S 112 UNP Q0INY7 LEU 158 CONFLICT SEQADV 3AXK NME T 0 UNP Q0INY7 AMIDATION SEQADV 3AXK CYS T 112 UNP Q0INY7 LEU 158 CONFLICT SEQRES 1 A 477 MET SER PRO GLN THR GLU THR LYS ALA SER VAL GLY PHE SEQRES 2 A 477 LYS ALA GLY VAL LYS ASP TYR LYS LEU THR TYR TYR THR SEQRES 3 A 477 PRO GLU TYR GLU THR LYS ASP THR ASP ILE LEU ALA ALA SEQRES 4 A 477 PHE ARG VAL THR PRO GLN PRO GLY VAL PRO PRO GLU GLU SEQRES 5 A 477 ALA GLY ALA ALA VAL ALA ALA GLU SER SER THR GLY THR SEQRES 6 A 477 TRP THR THR VAL TRP THR ASP GLY LEU THR SER LEU ASP SEQRES 7 A 477 ARG TYR LYS GLY ARG CYS TYR HIS ILE GLU PRO VAL VAL SEQRES 8 A 477 GLY GLU ASP ASN GLN TYR ILE ALA TYR VAL ALA TYR PRO SEQRES 9 A 477 LEU ASP LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE SEQRES 10 A 477 THR SER ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU SEQRES 11 A 477 ARG ALA LEU ARG LEU GLU ASP LEU ARG ILE PRO PRO THR SEQRES 12 A 477 TYR SER LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN SEQRES 13 A 477 VAL GLU ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU SEQRES 14 A 477 LEU GLY CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA SEQRES 15 A 477 LYS ASN TYR GLY ARG ALA CYS TYR GLU CYS LEU ARG GLY SEQRES 16 A 477 GLY LEU ASP PHE THR KCX ASP ASP GLU ASN VAL ASN SER SEQRES 17 A 477 GLN PRO PHE MET ARG TRP ARG ASP ARG PHE VAL PHE CYS SEQRES 18 A 477 ALA GLU ALA ILE TYR LYS SER GLN ALA GLU THR GLY GLU SEQRES 19 A 477 ILE LYS GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS SEQRES 20 A 477 GLU GLU MET ILE LYS ARG ALA VAL PHE ALA ARG GLU LEU SEQRES 21 A 477 GLY VAL PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY SEQRES 22 A 477 PHE THR ALA ASN THR SER LEU ALA HIS TYR CYS ARG ASP SEQRES 23 A 477 ASN GLY LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA SEQRES 24 A 477 VAL ILE ASP ARG GLN LYS ASN HIS GLY MET HIS PHE ARG SEQRES 25 A 477 VAL LEU ALA LYS ALA LEU ARG MET SER GLY GLY ASP HIS SEQRES 26 A 477 ILE HIS ALA GLY THR VAL VAL GLY LYS LEU GLU GLY GLU SEQRES 27 A 477 ARG GLU MET THR LEU GLY PHE VAL ASP LEU LEU ARG ASP SEQRES 28 A 477 ASP PHE ILE GLU LYS ASP ARG ALA ARG GLY ILE PHE PHE SEQRES 29 A 477 THR GLN ASP TRP VAL SER MET PRO GLY VAL ILE PRO VAL SEQRES 30 A 477 ALA SER GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU SEQRES 31 A 477 THR GLU ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY SEQRES 32 A 477 GLY GLY THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY SEQRES 33 A 477 ALA ALA ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL GLN SEQRES 34 A 477 ALA ARG ASN GLU GLY ARG ASP LEU ALA ARG GLU GLY ASN SEQRES 35 A 477 GLU ILE ILE ARG SER ALA CYS LYS TRP SER PRO GLU LEU SEQRES 36 A 477 ALA ALA ALA CYS GLU ILE TRP LYS ALA ILE LYS PHE GLU SEQRES 37 A 477 PHE GLU PRO VAL ASP LYS LEU ASP SER SEQRES 1 S 129 NME MET GLN VAL TRP PRO ILE GLU GLY ILE LYS LYS PHE SEQRES 2 S 129 GLU THR LEU SER TYR LEU PRO PRO LEU THR VAL GLU ASP SEQRES 3 S 129 LEU LEU LYS GLN ILE GLU TYR LEU LEU ARG SER LYS TRP SEQRES 4 S 129 VAL PRO CYS LEU GLU PHE SER LYS VAL GLY PHE VAL TYR SEQRES 5 S 129 ARG GLU ASN HIS ARG SER PRO GLY TYR TYR ASP GLY ARG SEQRES 6 S 129 TYR TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR SEQRES 7 S 129 ASP ALA THR GLN VAL LEU LYS GLU LEU GLU GLU ALA LYS SEQRES 8 S 129 LYS ALA TYR PRO ASP ALA PHE VAL ARG ILE ILE GLY PHE SEQRES 9 S 129 ASP ASN VAL ARG GLN VAL GLN CYS ILE SER PHE ILE ALA SEQRES 10 S 129 TYR LYS PRO PRO GLY CYS GLU GLU SER GLY GLY ASN SEQRES 1 B 477 MET SER PRO GLN THR GLU THR LYS ALA SER VAL GLY PHE SEQRES 2 B 477 LYS ALA GLY VAL LYS ASP TYR LYS LEU THR TYR TYR THR SEQRES 3 B 477 PRO GLU TYR GLU THR LYS ASP THR ASP ILE LEU ALA ALA SEQRES 4 B 477 PHE ARG VAL THR PRO GLN PRO GLY VAL PRO PRO GLU GLU SEQRES 5 B 477 ALA GLY ALA ALA VAL ALA ALA GLU SER SER THR GLY THR SEQRES 6 B 477 TRP THR THR VAL TRP THR ASP GLY LEU THR SER LEU ASP SEQRES 7 B 477 ARG TYR LYS GLY ARG CYS TYR HIS ILE GLU PRO VAL VAL SEQRES 8 B 477 GLY GLU ASP ASN GLN TYR ILE ALA TYR VAL ALA TYR PRO SEQRES 9 B 477 LEU ASP LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE SEQRES 10 B 477 THR SER ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU SEQRES 11 B 477 ARG ALA LEU ARG LEU GLU ASP LEU ARG ILE PRO PRO THR SEQRES 12 B 477 TYR SER LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN SEQRES 13 B 477 VAL GLU ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU SEQRES 14 B 477 LEU GLY CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA SEQRES 15 B 477 LYS ASN TYR GLY ARG ALA CYS TYR GLU CYS LEU ARG GLY SEQRES 16 B 477 GLY LEU ASP PHE THR KCX ASP ASP GLU ASN VAL ASN SER SEQRES 17 B 477 GLN PRO PHE MET ARG TRP ARG ASP ARG PHE VAL PHE CYS SEQRES 18 B 477 ALA GLU ALA ILE TYR LYS SER GLN ALA GLU THR GLY GLU SEQRES 19 B 477 ILE LYS GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS SEQRES 20 B 477 GLU GLU MET ILE LYS ARG ALA VAL PHE ALA ARG GLU LEU SEQRES 21 B 477 GLY VAL PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY SEQRES 22 B 477 PHE THR ALA ASN THR SER LEU ALA HIS TYR CYS ARG ASP SEQRES 23 B 477 ASN GLY LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA SEQRES 24 B 477 VAL ILE ASP ARG GLN LYS ASN HIS GLY MET HIS PHE ARG SEQRES 25 B 477 VAL LEU ALA LYS ALA LEU ARG MET SER GLY GLY ASP HIS SEQRES 26 B 477 ILE HIS ALA GLY THR VAL VAL GLY LYS LEU GLU GLY GLU SEQRES 27 B 477 ARG GLU MET THR LEU GLY PHE VAL ASP LEU LEU ARG ASP SEQRES 28 B 477 ASP PHE ILE GLU LYS ASP ARG ALA ARG GLY ILE PHE PHE SEQRES 29 B 477 THR GLN ASP TRP VAL SER MET PRO GLY VAL ILE PRO VAL SEQRES 30 B 477 ALA SER GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU SEQRES 31 B 477 THR GLU ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY SEQRES 32 B 477 GLY GLY THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY SEQRES 33 B 477 ALA ALA ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL GLN SEQRES 34 B 477 ALA ARG ASN GLU GLY ARG ASP LEU ALA ARG GLU GLY ASN SEQRES 35 B 477 GLU ILE ILE ARG SER ALA CYS LYS TRP SER PRO GLU LEU SEQRES 36 B 477 ALA ALA ALA CYS GLU ILE TRP LYS ALA ILE LYS PHE GLU SEQRES 37 B 477 PHE GLU PRO VAL ASP LYS LEU ASP SER SEQRES 1 T 129 NME MET GLN VAL TRP PRO ILE GLU GLY ILE LYS LYS PHE SEQRES 2 T 129 GLU THR LEU SER TYR LEU PRO PRO LEU THR VAL GLU ASP SEQRES 3 T 129 LEU LEU LYS GLN ILE GLU TYR LEU LEU ARG SER LYS TRP SEQRES 4 T 129 VAL PRO CYS LEU GLU PHE SER LYS VAL GLY PHE VAL TYR SEQRES 5 T 129 ARG GLU ASN HIS ARG SER PRO GLY TYR TYR ASP GLY ARG SEQRES 6 T 129 TYR TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR SEQRES 7 T 129 ASP ALA THR GLN VAL LEU LYS GLU LEU GLU GLU ALA LYS SEQRES 8 T 129 LYS ALA TYR PRO ASP ALA PHE VAL ARG ILE ILE GLY PHE SEQRES 9 T 129 ASP ASN VAL ARG GLN VAL GLN CYS ILE SER PHE ILE ALA SEQRES 10 T 129 TYR LYS PRO PRO GLY CYS GLU GLU SER GLY GLY ASN MODRES 3AXK KCX A 201 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 3AXK KCX B 201 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 201 12 HET NME S 0 1 HET KCX B 201 12 HET NME T 0 1 HET GOL A 501 6 HET GOL A 502 6 HET MG A 478 1 HET NDP A 479 48 HET NDP A 480 48 HET GOL B 503 6 HET GOL B 504 6 HET MG B 478 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM NME METHYLAMINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 2 NME 2(C H5 N) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 MG 2(MG 2+) FORMUL 8 NDP 2(C21 H30 N7 O17 P3) FORMUL 13 HOH *1125(H2 O) HELIX 1 1 TYR A 20 TYR A 25 1 6 HELIX 2 2 PRO A 49 SER A 61 1 13 HELIX 3 3 VAL A 69 THR A 75 5 7 HELIX 4 4 SER A 76 TYR A 80 5 5 HELIX 5 5 PRO A 104 PHE A 108 5 5 HELIX 6 6 SER A 112 GLY A 122 1 11 HELIX 7 7 ASN A 123 PHE A 127 5 5 HELIX 8 8 PRO A 141 LYS A 146 1 6 HELIX 9 9 GLY A 154 ASN A 163 1 10 HELIX 10 10 SER A 181 GLY A 195 1 15 HELIX 11 11 ARG A 213 GLY A 233 1 21 HELIX 12 12 THR A 246 GLY A 261 1 16 HELIX 13 13 TYR A 269 GLY A 273 1 5 HELIX 14 14 GLY A 273 GLY A 288 1 16 HELIX 15 15 MET A 297 ARG A 303 1 7 HELIX 16 16 HIS A 310 GLY A 322 1 13 HELIX 17 17 GLU A 338 ASP A 351 1 14 HELIX 18 18 ASP A 357 GLY A 361 5 5 HELIX 19 19 HIS A 383 TRP A 385 5 3 HELIX 20 20 HIS A 386 GLY A 395 1 10 HELIX 21 21 GLY A 403 GLY A 408 1 6 HELIX 22 22 GLY A 412 GLU A 433 1 22 HELIX 23 23 ASP A 436 LYS A 450 1 15 HELIX 24 24 SER A 452 TRP A 462 1 11 HELIX 25 25 THR S 22 SER S 36 1 15 HELIX 26 26 ASP S 79 TYR S 94 1 16 HELIX 27 27 PRO B 49 SER B 61 1 13 HELIX 28 28 TRP B 70 THR B 75 5 6 HELIX 29 29 SER B 76 LYS B 81 1 6 HELIX 30 30 PRO B 104 PHE B 108 5 5 HELIX 31 31 SER B 112 GLY B 122 1 11 HELIX 32 32 ASN B 123 PHE B 127 5 5 HELIX 33 33 PRO B 141 LYS B 146 1 6 HELIX 34 34 GLY B 154 ASN B 163 1 10 HELIX 35 35 SER B 181 GLY B 195 1 15 HELIX 36 36 ARG B 213 GLY B 233 1 21 HELIX 37 37 THR B 246 GLY B 261 1 16 HELIX 38 38 TYR B 269 GLY B 273 1 5 HELIX 39 39 GLY B 273 GLY B 288 1 16 HELIX 40 40 MET B 297 ARG B 303 1 7 HELIX 41 41 HIS B 310 GLY B 322 1 13 HELIX 42 42 GLU B 338 ASP B 351 1 14 HELIX 43 43 ASP B 357 GLY B 361 5 5 HELIX 44 44 HIS B 383 TRP B 385 5 3 HELIX 45 45 HIS B 386 GLY B 395 1 10 HELIX 46 46 GLY B 403 GLY B 408 1 6 HELIX 47 47 GLY B 412 GLU B 433 1 22 HELIX 48 48 ASP B 436 CYS B 449 1 14 HELIX 49 49 SER B 452 LYS B 463 1 12 HELIX 50 50 THR T 22 SER T 36 1 15 HELIX 51 51 ASP T 79 TYR T 94 1 16 SHEET 1 A 5 ARG A 83 PRO A 89 0 SHEET 2 A 5 TYR A 97 TYR A 103 -1 O TYR A 100 N HIS A 86 SHEET 3 A 5 ILE A 36 PRO A 44 -1 N VAL A 42 O TYR A 97 SHEET 4 A 5 LEU A 130 ARG A 139 -1 O ARG A 134 N ARG A 41 SHEET 5 A 5 GLY A 308 MET A 309 1 O GLY A 308 N LEU A 135 SHEET 1 B 9 LEU A 169 THR A 173 0 SHEET 2 B 9 PHE A 199 KCX A 201 1 O PHE A 199 N LEU A 170 SHEET 3 B 9 GLY A 237 ASN A 241 1 O TYR A 239 N THR A 200 SHEET 4 B 9 ILE A 264 ASP A 268 1 O MET A 266 N LEU A 240 SHEET 5 B 9 LEU A 290 HIS A 294 1 O HIS A 292 N VAL A 265 SHEET 6 B 9 HIS A 325 GLY A 329 1 N HIS A 325 O LEU A 291 SHEET 7 B 9 ILE A 375 SER A 379 1 O VAL A 377 N ALA A 328 SHEET 8 B 9 VAL A 399 PHE A 402 1 O GLN A 401 N ALA A 378 SHEET 9 B 9 LEU A 169 THR A 173 1 N GLY A 171 O PHE A 402 SHEET 1 C 2 PHE A 353 ILE A 354 0 SHEET 2 C 2 GLN A 366 ASP A 367 -1 O GLN A 366 N ILE A 354 SHEET 1 D 4 THR S 68 TRP S 70 0 SHEET 2 D 4 VAL S 39 SER S 45 -1 N LEU S 42 O TRP S 70 SHEET 3 D 4 PHE S 98 ASP S 105 -1 O PHE S 98 N SER S 45 SHEET 4 D 4 VAL S 110 TYR S 118 -1 O PHE S 115 N ILE S 101 SHEET 1 E 5 ARG B 83 PRO B 89 0 SHEET 2 E 5 TYR B 97 TYR B 103 -1 O ILE B 98 N GLU B 88 SHEET 3 E 5 ILE B 36 PRO B 44 -1 N PHE B 40 O ALA B 99 SHEET 4 E 5 LEU B 130 ARG B 139 -1 O ARG B 134 N ARG B 41 SHEET 5 E 5 GLY B 308 MET B 309 1 O GLY B 308 N LEU B 135 SHEET 1 F 9 LEU B 169 THR B 173 0 SHEET 2 F 9 PHE B 199 KCX B 201 1 O PHE B 199 N LEU B 170 SHEET 3 F 9 GLY B 237 ASN B 241 1 O TYR B 239 N THR B 200 SHEET 4 F 9 ILE B 264 ASP B 268 1 O MET B 266 N LEU B 240 SHEET 5 F 9 LEU B 290 HIS B 294 1 O HIS B 292 N VAL B 265 SHEET 6 F 9 HIS B 325 GLY B 329 1 N HIS B 325 O LEU B 291 SHEET 7 F 9 ILE B 375 SER B 379 1 O VAL B 377 N ALA B 328 SHEET 8 F 9 VAL B 399 GLN B 401 1 O VAL B 399 N ALA B 378 SHEET 9 F 9 LEU B 169 THR B 173 1 N LEU B 169 O LEU B 400 SHEET 1 G 2 PHE B 353 ILE B 354 0 SHEET 2 G 2 GLN B 366 ASP B 367 -1 O GLN B 366 N ILE B 354 SHEET 1 H 4 THR T 68 TRP T 70 0 SHEET 2 H 4 VAL T 39 SER T 45 -1 N LEU T 42 O TRP T 70 SHEET 3 H 4 PHE T 98 ASP T 105 -1 O ILE T 102 N CYS T 41 SHEET 4 H 4 VAL T 110 TYR T 118 -1 O ALA T 117 N VAL T 99 SSBOND 1 CYS A 247 CYS B 247 1555 1555 2.67 LINK C THR A 200 N KCX A 201 1555 1555 1.33 LINK C KCX A 201 N ASP A 202 1555 1555 1.34 LINK C THR B 200 N KCX B 201 1555 1555 1.33 LINK C KCX B 201 N ASP B 202 1555 1555 1.33 LINK OE1 GLU A 204 MG MG A 478 1555 1555 1.99 LINK OE1 GLU B 204 MG MG B 478 1555 1555 2.08 LINK OQ1 KCX A 201 MG MG A 478 1555 1555 2.10 LINK OQ1 KCX B 201 MG MG B 478 1555 1555 2.15 LINK OD2 ASP B 203 MG MG B 478 1555 1555 2.16 LINK OD2 ASP A 203 MG MG A 478 1555 1555 2.43 LINK OQ2 KCX A 201 MG MG A 478 1555 1555 2.99 LINK MG MG A 478 O HOH A 616 1555 1555 1.98 LINK MG MG B 478 O HOH B 855 1555 1555 1.99 LINK MG MG A 478 O HOH A 693 1555 1555 2.04 LINK MG MG B 478 O HOH B 787 1555 1555 2.24 LINK MG MG B 478 O HOH B 734 1555 1555 2.27 LINK MG MG A 478 O HOH A 901 1555 1555 2.59 LINK C NME T 0 N MET T 1 1555 1555 1.33 LINK C NME S 0 N MET S 1 1555 1555 1.33 CISPEP 1 LYS A 175 PRO A 176 0 -0.92 CISPEP 2 LYS B 175 PRO B 176 0 0.37 SITE 1 AC1 9 LEU A 270 GLY A 273 MET A 297 ILE A 301 SITE 2 AC1 9 HOH A 627 HOH A 628 HOH A 629 LEU B 270 SITE 3 AC1 9 ILE B 301 SITE 1 AC2 5 HIS A 86 GLU A 88 LYS A 356 ARG A 358 SITE 2 AC2 5 HOH B 976 SITE 1 AC3 6 KCX A 201 ASP A 203 GLU A 204 HOH A 616 SITE 2 AC3 6 HOH A 693 HOH A 901 SITE 1 AC4 28 LYS A 175 HIS A 294 ARG A 295 HIS A 298 SITE 2 AC4 28 SER A 379 GLY A 380 GLY A 381 GLY A 403 SITE 3 AC4 28 GLY A 404 GLY A 405 HOH A 580 HOH A 595 SITE 4 AC4 28 HOH A 614 HOH A 616 HOH A 693 HOH A 758 SITE 5 AC4 28 HOH A1073 HOH A1080 HOH A1081 HOH A1083 SITE 6 AC4 28 HOH A1085 HOH A1086 HOH A1115 GLU B 60 SITE 7 AC4 28 ASN B 123 GLY B 126 PHE B 127 HOH B 733 SITE 1 AC5 32 GLU A 60 THR A 68 ASN A 123 GLY A 126 SITE 2 AC5 32 PHE A 127 HOH A 534 HOH A 594 HOH A 854 SITE 3 AC5 32 HOH A1074 HOH A1076 HOH A1090 HOH A1091 SITE 4 AC5 32 HOH A1092 HOH A1093 HOH A1096 LYS B 175 SITE 5 AC5 32 HIS B 294 ARG B 295 HIS B 298 SER B 379 SITE 6 AC5 32 GLY B 380 GLY B 381 ILE B 382 GLY B 404 SITE 7 AC5 32 GLY B 405 HOH B 696 HOH B 787 HOH B 855 SITE 8 AC5 32 HOH B1078 HOH B1079 HOH B1087 HOH B1125 SITE 1 AC6 9 SER A 145 LYS A 146 PHE A 148 ARG A 213 SITE 2 AC6 9 HOH A 497 HOH A 539 HOH A1109 GLU B 110 SITE 3 AC6 9 GOL B 504 SITE 1 AC7 6 LYS A 146 THR A 147 HOH A 894 HOH A 895 SITE 2 AC7 6 GOL B 503 HOH B 654 SITE 1 AC8 6 KCX B 201 ASP B 203 GLU B 204 HOH B 734 SITE 2 AC8 6 HOH B 787 HOH B 855 CRYST1 110.246 110.246 199.768 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005006 0.00000