HEADER TRANSFERASE 21-APR-11 3AY0 TITLE CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII TRM5 IN COMPLEX TITLE 2 WITH ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ0883; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ0883, TRM5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-26B KEYWDS ROSSMANN FOLD, METHYLTRANSFERASE, ADOMET BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GOTO-ITO,T.ITO,Y.M.HOU,S.YOKOYAMA REVDAT 2 01-NOV-23 3AY0 1 REMARK LINK REVDAT 1 17-AUG-11 3AY0 0 JRNL AUTH G.LAHOUD,S.GOTO-ITO,K.YOSHIDA,T.ITO,S.YOKOYAMA,Y.M.HOU JRNL TITL DIFFERENTIATING ANALOGOUS TRNA METHYLTRANSFERASES BY JRNL TITL 2 FRAGMENTS OF THE METHYL DONOR. JRNL REF RNA V. 17 1236 2011 JRNL REFN ISSN 1355-8382 JRNL PMID 21602303 JRNL DOI 10.1261/RNA.2706011 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 724 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.481 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000029836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14439 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M HEPES, 0.175M SODIUM REMARK 280 THIOCYANATE, 8% PEG 3350, 5% PEGMME 550, 0.002M ZINC SULFATE, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.56350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 69 REMARK 465 ILE A 70 REMARK 465 ILE A 71 REMARK 465 LYS A 72 REMARK 465 LYS A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 137 REMARK 465 SER A 138 REMARK 465 GLU A 139 REMARK 465 VAL A 140 REMARK 465 LYS A 141 REMARK 465 GLY A 142 REMARK 465 GLU A 143 REMARK 465 PHE A 144 REMARK 465 ARG A 145 REMARK 465 MET B 1 REMARK 465 GLU B 64 REMARK 465 LEU B 65 REMARK 465 GLU B 66 REMARK 465 GLU B 67 REMARK 465 LYS B 68 REMARK 465 LYS B 69 REMARK 465 ILE B 70 REMARK 465 ILE B 71 REMARK 465 LYS B 72 REMARK 465 LYS B 73 REMARK 465 PRO B 74 REMARK 465 SER B 75 REMARK 465 PHE B 76 REMARK 465 ARG B 77 REMARK 465 SER B 138 REMARK 465 GLU B 139 REMARK 465 VAL B 140 REMARK 465 LYS B 141 REMARK 465 GLY B 142 REMARK 465 GLU B 143 REMARK 465 PHE B 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 -13.13 -44.21 REMARK 500 PHE A 76 -51.25 78.21 REMARK 500 GLU A 78 -82.12 -67.43 REMARK 500 TYR A 84 12.16 -154.79 REMARK 500 ASP A 89 39.52 -93.97 REMARK 500 GLU A 90 54.88 -178.02 REMARK 500 LEU A 92 -41.92 58.88 REMARK 500 LEU A 95 39.79 -93.18 REMARK 500 GLU A 111 31.28 -61.15 REMARK 500 LYS A 115 -9.33 -56.25 REMARK 500 LYS A 126 -64.62 -98.70 REMARK 500 LEU A 152 -63.70 -108.77 REMARK 500 ASN A 156 63.80 -100.32 REMARK 500 GLU A 164 137.14 -170.35 REMARK 500 ILE A 173 -26.32 -39.06 REMARK 500 LYS A 244 -55.57 -127.00 REMARK 500 SER A 250 170.70 168.36 REMARK 500 GLU A 254 37.72 -91.60 REMARK 500 ASP A 256 79.22 -118.24 REMARK 500 MET A 264 70.05 -112.55 REMARK 500 LYS A 272 20.96 -76.54 REMARK 500 ASP A 295 -164.63 -128.03 REMARK 500 LEU A 302 -48.80 -28.07 REMARK 500 ASP A 308 78.00 -105.90 REMARK 500 GLU A 313 144.69 -170.01 REMARK 500 TYR A 320 -77.06 -104.66 REMARK 500 ALA A 321 -140.99 -118.33 REMARK 500 LYS A 335 123.51 -175.94 REMARK 500 LEU B 3 102.80 137.01 REMARK 500 ASP B 28 -67.16 -132.47 REMARK 500 GLU B 34 -139.34 -154.63 REMARK 500 LEU B 40 113.78 82.96 REMARK 500 VAL B 45 139.90 -174.92 REMARK 500 VAL B 61 -156.31 -138.98 REMARK 500 ASP B 62 -156.03 -148.52 REMARK 500 SER B 81 -82.29 -61.85 REMARK 500 LYS B 82 -59.69 53.27 REMARK 500 ARG B 85 12.96 -66.75 REMARK 500 LEU B 95 37.69 -85.66 REMARK 500 ILE B 108 72.35 -105.21 REMARK 500 SER B 109 106.71 -47.90 REMARK 500 ASP B 110 140.46 -38.44 REMARK 500 GLU B 111 35.47 135.16 REMARK 500 TYR B 125 -9.62 -55.04 REMARK 500 LYS B 126 -85.07 -96.05 REMARK 500 LEU B 127 4.62 -58.10 REMARK 500 CYS B 130 -169.27 -168.57 REMARK 500 ARG B 136 -145.39 -43.01 REMARK 500 LEU B 152 -68.35 -136.47 REMARK 500 ALA B 153 -162.63 -107.82 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 339 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 11 ND1 REMARK 620 2 HOH A 341 O 101.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 337 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 OE1 REMARK 620 2 GLU A 111 OE2 53.3 REMARK 620 3 HIS B 271 NE2 75.6 96.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 338 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 ND1 REMARK 620 2 GLU A 230 OE2 99.0 REMARK 620 3 HOH A 346 O 91.5 108.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 337 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 227 ND1 REMARK 620 2 GLU B 230 OE1 110.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 338 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 243 ND1 REMARK 620 2 HOH B 340 O 87.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AXZ RELATED DB: PDB DBREF 3AY0 A 1 336 UNP Q58293 Y883_METJA 1 336 DBREF 3AY0 B 1 336 UNP Q58293 Y883_METJA 1 336 SEQRES 1 A 336 MET PRO LEU CYS LEU LYS ILE ASN LYS LYS HIS GLY GLU SEQRES 2 A 336 GLN THR ARG ARG ILE LEU ILE GLU ASN ASN LEU LEU ASN SEQRES 3 A 336 LYS ASP TYR LYS ILE THR SER GLU GLY ASN TYR LEU TYR SEQRES 4 A 336 LEU PRO ILE LYS ASP VAL ASP GLU ASP ILE LEU LYS SER SEQRES 5 A 336 ILE LEU ASN ILE GLU PHE GLU LEU VAL ASP LYS GLU LEU SEQRES 6 A 336 GLU GLU LYS LYS ILE ILE LYS LYS PRO SER PHE ARG GLU SEQRES 7 A 336 ILE ILE SER LYS LYS TYR ARG LYS GLU ILE ASP GLU GLY SEQRES 8 A 336 LEU ILE SER LEU SER TYR ASP VAL VAL GLY ASP LEU VAL SEQRES 9 A 336 ILE LEU GLN ILE SER ASP GLU VAL ASP GLU LYS ILE ARG SEQRES 10 A 336 LYS GLU ILE GLY GLU LEU ALA TYR LYS LEU ILE PRO CYS SEQRES 11 A 336 LYS GLY VAL PHE ARG ARG LYS SER GLU VAL LYS GLY GLU SEQRES 12 A 336 PHE ARG VAL ARG GLU LEU GLU HIS LEU ALA GLY GLU ASN SEQRES 13 A 336 ARG THR LEU THR ILE HIS LYS GLU ASN GLY TYR ARG LEU SEQRES 14 A 336 TRP VAL ASP ILE ALA LYS VAL TYR PHE SER PRO ARG LEU SEQRES 15 A 336 GLY GLY GLU ARG ALA ARG ILE MET LYS LYS VAL SER LEU SEQRES 16 A 336 ASN ASP VAL VAL VAL ASP MET PHE ALA GLY VAL GLY PRO SEQRES 17 A 336 PHE SER ILE ALA CYS LYS ASN ALA LYS LYS ILE TYR ALA SEQRES 18 A 336 ILE ASP ILE ASN PRO HIS ALA ILE GLU LEU LEU LYS LYS SEQRES 19 A 336 ASN ILE LYS LEU ASN LYS LEU GLU HIS LYS ILE ILE PRO SEQRES 20 A 336 ILE LEU SER ASP VAL ARG GLU VAL ASP VAL LYS GLY ASN SEQRES 21 A 336 ARG VAL ILE MET ASN LEU PRO LYS PHE ALA HIS LYS PHE SEQRES 22 A 336 ILE ASP LYS ALA LEU ASP ILE VAL GLU GLU GLY GLY VAL SEQRES 23 A 336 ILE HIS TYR TYR THR ILE GLY LYS ASP PHE ASP LYS ALA SEQRES 24 A 336 ILE LYS LEU PHE GLU LYS LYS CYS ASP CYS GLU VAL LEU SEQRES 25 A 336 GLU LYS ARG ILE VAL LYS SER TYR ALA PRO ARG GLU TYR SEQRES 26 A 336 ILE LEU ALA LEU ASP PHE LYS ILE ASN LYS LYS SEQRES 1 B 336 MET PRO LEU CYS LEU LYS ILE ASN LYS LYS HIS GLY GLU SEQRES 2 B 336 GLN THR ARG ARG ILE LEU ILE GLU ASN ASN LEU LEU ASN SEQRES 3 B 336 LYS ASP TYR LYS ILE THR SER GLU GLY ASN TYR LEU TYR SEQRES 4 B 336 LEU PRO ILE LYS ASP VAL ASP GLU ASP ILE LEU LYS SER SEQRES 5 B 336 ILE LEU ASN ILE GLU PHE GLU LEU VAL ASP LYS GLU LEU SEQRES 6 B 336 GLU GLU LYS LYS ILE ILE LYS LYS PRO SER PHE ARG GLU SEQRES 7 B 336 ILE ILE SER LYS LYS TYR ARG LYS GLU ILE ASP GLU GLY SEQRES 8 B 336 LEU ILE SER LEU SER TYR ASP VAL VAL GLY ASP LEU VAL SEQRES 9 B 336 ILE LEU GLN ILE SER ASP GLU VAL ASP GLU LYS ILE ARG SEQRES 10 B 336 LYS GLU ILE GLY GLU LEU ALA TYR LYS LEU ILE PRO CYS SEQRES 11 B 336 LYS GLY VAL PHE ARG ARG LYS SER GLU VAL LYS GLY GLU SEQRES 12 B 336 PHE ARG VAL ARG GLU LEU GLU HIS LEU ALA GLY GLU ASN SEQRES 13 B 336 ARG THR LEU THR ILE HIS LYS GLU ASN GLY TYR ARG LEU SEQRES 14 B 336 TRP VAL ASP ILE ALA LYS VAL TYR PHE SER PRO ARG LEU SEQRES 15 B 336 GLY GLY GLU ARG ALA ARG ILE MET LYS LYS VAL SER LEU SEQRES 16 B 336 ASN ASP VAL VAL VAL ASP MET PHE ALA GLY VAL GLY PRO SEQRES 17 B 336 PHE SER ILE ALA CYS LYS ASN ALA LYS LYS ILE TYR ALA SEQRES 18 B 336 ILE ASP ILE ASN PRO HIS ALA ILE GLU LEU LEU LYS LYS SEQRES 19 B 336 ASN ILE LYS LEU ASN LYS LEU GLU HIS LYS ILE ILE PRO SEQRES 20 B 336 ILE LEU SER ASP VAL ARG GLU VAL ASP VAL LYS GLY ASN SEQRES 21 B 336 ARG VAL ILE MET ASN LEU PRO LYS PHE ALA HIS LYS PHE SEQRES 22 B 336 ILE ASP LYS ALA LEU ASP ILE VAL GLU GLU GLY GLY VAL SEQRES 23 B 336 ILE HIS TYR TYR THR ILE GLY LYS ASP PHE ASP LYS ALA SEQRES 24 B 336 ILE LYS LEU PHE GLU LYS LYS CYS ASP CYS GLU VAL LEU SEQRES 25 B 336 GLU LYS ARG ILE VAL LYS SER TYR ALA PRO ARG GLU TYR SEQRES 26 B 336 ILE LEU ALA LEU ASP PHE LYS ILE ASN LYS LYS HET ZN A 337 1 HET ZN A 338 1 HET ZN A 339 1 HET ADN A 401 19 HET ZN B 337 1 HET ZN B 338 1 HET ADN B 402 19 HETNAM ZN ZINC ION HETNAM ADN ADENOSINE FORMUL 3 ZN 5(ZN 2+) FORMUL 6 ADN 2(C10 H13 N5 O4) FORMUL 10 HOH *13(H2 O) HELIX 1 1 HIS A 11 ASN A 22 1 12 HELIX 2 2 ASP A 46 LEU A 54 1 9 HELIX 3 3 PHE A 76 LYS A 83 1 8 HELIX 4 4 TYR A 84 ASP A 89 1 6 HELIX 5 5 ASP A 113 LEU A 123 1 11 HELIX 6 6 SER A 179 ARG A 181 5 3 HELIX 7 7 LEU A 182 LYS A 191 1 10 HELIX 8 8 GLY A 207 ALA A 212 1 6 HELIX 9 9 ASN A 225 ASN A 239 1 15 HELIX 10 10 ASP A 251 VAL A 255 5 5 HELIX 11 11 PHE A 269 LYS A 272 5 4 HELIX 12 12 PHE A 273 ILE A 280 1 8 HELIX 13 13 PHE A 296 CYS A 307 1 12 HELIX 14 14 HIS B 11 ASN B 22 1 12 HELIX 15 15 ASP B 46 LYS B 51 1 6 HELIX 16 16 LYS B 86 GLY B 91 1 6 HELIX 17 17 ILE B 116 ILE B 128 1 13 HELIX 18 18 SER B 179 ARG B 181 5 3 HELIX 19 19 LEU B 182 LYS B 191 1 10 HELIX 20 20 GLY B 207 CYS B 213 1 7 HELIX 21 21 ASN B 225 ASN B 239 1 15 HELIX 22 22 PHE B 269 LYS B 272 5 4 HELIX 23 23 PHE B 273 ILE B 280 1 8 HELIX 24 24 PHE B 296 CYS B 307 1 12 SHEET 1 A 4 THR A 32 GLU A 34 0 SHEET 2 A 4 TYR A 37 PRO A 41 -1 O TYR A 39 N THR A 32 SHEET 3 A 4 LEU A 3 ASN A 8 -1 N ILE A 7 O LEU A 38 SHEET 4 A 4 GLU A 59 ASP A 62 -1 O GLU A 59 N LYS A 6 SHEET 1 B 4 ASP A 98 VAL A 100 0 SHEET 2 B 4 LEU A 103 LEU A 106 -1 O LEU A 103 N VAL A 100 SHEET 3 B 4 GLY A 132 ARG A 135 1 O PHE A 134 N LEU A 106 SHEET 4 B 4 GLU A 150 GLY A 154 -1 O LEU A 152 N VAL A 133 SHEET 1 C 2 LEU A 159 GLU A 164 0 SHEET 2 C 2 TYR A 167 ASP A 172 -1 O VAL A 171 N THR A 160 SHEET 1 D 7 ILE A 245 LEU A 249 0 SHEET 2 D 7 LYS A 218 ASP A 223 1 N ILE A 219 O ILE A 246 SHEET 3 D 7 VAL A 198 ASP A 201 1 N VAL A 199 O TYR A 220 SHEET 4 D 7 GLY A 259 MET A 264 1 O ARG A 261 N VAL A 200 SHEET 5 D 7 VAL A 281 GLY A 293 1 O HIS A 288 N VAL A 262 SHEET 6 D 7 TYR A 325 LYS A 335 -1 O LEU A 329 N TYR A 289 SHEET 7 D 7 ASP A 308 SER A 319 -1 N LEU A 312 O ASP A 330 SHEET 1 E 2 ILE B 7 ASN B 8 0 SHEET 2 E 2 TYR B 37 LEU B 38 -1 O LEU B 38 N ILE B 7 SHEET 1 F 3 VAL B 99 VAL B 100 0 SHEET 2 F 3 LEU B 103 LEU B 106 -1 O LEU B 103 N VAL B 100 SHEET 3 F 3 GLY B 132 ARG B 135 1 O PHE B 134 N LEU B 106 SHEET 1 G 2 LEU B 159 GLU B 164 0 SHEET 2 G 2 TYR B 167 ASP B 172 -1 O LEU B 169 N HIS B 162 SHEET 1 H 7 ILE B 245 LEU B 249 0 SHEET 2 H 7 LYS B 218 ASP B 223 1 N ILE B 219 O ILE B 246 SHEET 3 H 7 VAL B 198 ASP B 201 1 N VAL B 199 O TYR B 220 SHEET 4 H 7 GLY B 259 MET B 264 1 O ARG B 261 N VAL B 200 SHEET 5 H 7 VAL B 281 GLY B 293 1 O HIS B 288 N VAL B 262 SHEET 6 H 7 GLU B 324 LYS B 335 -1 O ILE B 333 N GLY B 284 SHEET 7 H 7 ASP B 308 ALA B 321 -1 N GLU B 310 O LYS B 332 SSBOND 1 CYS A 307 CYS A 309 1555 1555 2.06 LINK ND1 HIS A 11 ZN ZN A 339 1555 1555 2.02 LINK OE1 GLU A 111 ZN ZN A 337 1555 1555 2.19 LINK OE2 GLU A 111 ZN ZN A 337 1555 1555 2.64 LINK ND1 HIS A 227 ZN ZN A 338 1555 1555 2.31 LINK OE2 GLU A 230 ZN ZN A 338 1555 1555 2.17 LINK ZN ZN A 337 NE2 HIS B 271 1555 1555 2.51 LINK ZN ZN A 338 O HOH A 346 1555 1555 2.55 LINK ZN ZN A 339 O HOH A 341 1555 1555 2.48 LINK ND1 HIS B 227 ZN ZN B 337 1555 1555 2.57 LINK OE1 GLU B 230 ZN ZN B 337 1555 1555 2.17 LINK ND1 HIS B 243 ZN ZN B 338 1555 1555 2.42 LINK ZN ZN B 338 O HOH B 340 1555 1555 2.66 SITE 1 AC1 4 GLU A 111 HOH A 347 HIS B 271 LYS B 272 SITE 1 AC2 4 LYS A 175 HIS A 227 GLU A 230 HOH A 346 SITE 1 AC3 3 HIS A 11 HOH A 341 HOH A 343 SITE 1 AC4 10 TYR A 177 PHE A 203 ASP A 223 ILE A 224 SITE 2 AC4 10 ASN A 225 SER A 250 ASP A 251 VAL A 252 SITE 3 AC4 10 ASN A 265 PHE A 273 SITE 1 AC5 2 HIS B 227 GLU B 230 SITE 1 AC6 2 HIS B 243 HOH B 340 SITE 1 AC7 11 TYR B 177 PHE B 203 ASP B 223 ILE B 224 SITE 2 AC7 11 ASN B 225 SER B 250 ASP B 251 VAL B 252 SITE 3 AC7 11 ASN B 265 LEU B 266 PHE B 273 CRYST1 61.490 67.127 92.239 90.00 93.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016263 0.000000 0.001066 0.00000 SCALE2 0.000000 0.014897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010865 0.00000