HEADER OXIDOREDUCTASE 06-MAY-11 3AYG TITLE CRYSTAL STRUCTURE OF NITRIC OXIDE REDUCTASE COMPLEX WITH HQNO COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: NORZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MATSUMOTO,T.TOSHA,A.V.PISLIAKOV,T.HINO,H.SUGIMOTI,S.NAGANO, AUTHOR 2 Y.SUGITA,Y.SHIRO REVDAT 4 13-MAR-24 3AYG 1 HETSYN REVDAT 3 29-JUL-20 3AYG 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 12-JUN-13 3AYG 1 JRNL REVDAT 1 25-JAN-12 3AYG 0 JRNL AUTH Y.MATSUMOTO,T.TOSHA,A.V.PISLIAKOV,T.HINO,H.SUGIMOTO, JRNL AUTH 2 S.NAGANO,Y.SUGITA,Y.SHIRO JRNL TITL CRYSTAL STRUCTURE OF QUINOL-DEPENDENT NITRIC OXIDE REDUCTASE JRNL TITL 2 FROM GEOBACILLUS STEAROTHERMOPHILUS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 238 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22266822 JRNL DOI 10.1038/NSMB.2213 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4011837.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1732 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5282 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 283 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 257 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.69000 REMARK 3 B22 (A**2) : -11.83000 REMARK 3 B33 (A**2) : 26.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.710 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.620 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 52.67 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : HEM.PARAM REMARK 3 PARAMETER FILE 5 : PG_OCTYL_HEPES.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : HEM.TOP REMARK 3 TOPOLOGY FILE 4 : PG_OCTYL.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3AYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000029852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34516 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% ISOPROPANOL, 50MM HEPES, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.25800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.54450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.25800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.54450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.79500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.25800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.54450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.79500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.25800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.54450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 ASN A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 117 REMARK 465 ARG A 118 REMARK 465 TYR A 119 REMARK 465 ASN A 120 REMARK 465 LYS A 121 REMARK 465 PRO A 122 REMARK 465 PHE A 123 REMARK 465 LEU A 778 REMARK 465 PRO A 779 REMARK 465 VAL A 780 REMARK 465 ALA A 781 REMARK 465 ASN A 782 REMARK 465 HIS A 783 REMARK 465 TRP A 784 REMARK 465 MET A 785 REMARK 465 LYS A 786 REMARK 465 ASP A 787 REMARK 465 ARG A 788 REMARK 465 LEU A 789 REMARK 465 LYS A 790 REMARK 465 ASN A 791 REMARK 465 SER A 792 REMARK 465 LEU A 793 REMARK 465 GLU A 794 REMARK 465 HIS A 795 REMARK 465 HIS A 796 REMARK 465 HIS A 797 REMARK 465 HIS A 798 REMARK 465 HIS A 799 REMARK 465 HIS A 800 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 168 NE2 GLN A 208 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 294 OD1 ASP A 334 8455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 333 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 435 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 50.05 -117.31 REMARK 500 TYR A 84 -55.35 -131.00 REMARK 500 ASP A 152 57.65 -57.21 REMARK 500 THR A 157 167.39 -47.88 REMARK 500 THR A 176 -59.82 -129.06 REMARK 500 TRP A 181 92.54 -171.84 REMARK 500 PRO A 194 164.68 -38.84 REMARK 500 ALA A 199 -84.75 -24.65 REMARK 500 SER A 204 155.50 159.04 REMARK 500 TYR A 239 87.99 -172.54 REMARK 500 LYS A 287 37.13 -99.28 REMARK 500 ARG A 295 57.39 -114.29 REMARK 500 LEU A 346 65.17 -118.05 REMARK 500 TRP A 395 0.18 -68.50 REMARK 500 TYR A 415 33.35 -76.92 REMARK 500 TYR A 430 -23.34 83.54 REMARK 500 ASP A 465 105.96 -59.38 REMARK 500 VAL A 480 -71.25 -52.19 REMARK 500 PRO A 492 -37.35 -34.20 REMARK 500 VAL A 517 -55.62 -127.01 REMARK 500 LEU A 587 41.84 -86.66 REMARK 500 LEU A 588 -63.61 -120.38 REMARK 500 HIS A 643 118.40 -33.58 REMARK 500 VAL A 659 -67.65 -101.20 REMARK 500 THR A 704 -68.87 -128.10 REMARK 500 VAL A 744 -70.34 -57.56 REMARK 500 LYS A 762 47.04 -75.27 REMARK 500 HIS A 766 33.03 -141.79 REMARK 500 PRO A 770 136.20 -38.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 91 O REMARK 620 2 TYR A 93 OH 88.1 REMARK 620 3 GLU A 429 OE1 78.9 164.5 REMARK 620 4 GLU A 429 OE2 90.5 141.3 48.4 REMARK 620 5 HEM A 801 O2D 105.9 72.8 118.8 70.4 REMARK 620 6 HEM A 802 O2A 170.3 100.7 91.7 85.1 80.9 REMARK 620 7 HEM A 802 O1A 132.0 88.7 93.5 119.5 118.8 45.2 REMARK 620 8 HOH A 979 O 82.7 77.9 91.8 140.2 149.1 95.1 49.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 355 NE2 REMARK 620 2 HEM A 801 NA 102.4 REMARK 620 3 HEM A 801 NB 96.8 87.4 REMARK 620 4 HEM A 801 NC 86.1 170.6 87.6 REMARK 620 5 HEM A 801 ND 92.3 92.7 170.7 91.0 REMARK 620 6 HIS A 653 NE2 175.1 79.0 88.0 92.9 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 508 ND1 REMARK 620 2 HIS A 559 NE2 119.2 REMARK 620 3 HIS A 560 NE2 106.7 91.1 REMARK 620 4 HOH A 929 O 87.9 86.6 164.2 REMARK 620 5 HOH A 978 O 106.4 125.7 103.0 66.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 651 NE2 REMARK 620 2 HEM A 802 NA 89.1 REMARK 620 3 HEM A 802 NB 94.1 90.2 REMARK 620 4 HEM A 802 NC 89.8 178.7 89.1 REMARK 620 5 HEM A 802 ND 85.9 90.4 179.4 90.3 REMARK 620 6 HOH A 978 O 177.8 88.7 86.1 92.3 93.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AYF RELATED DB: PDB DBREF 3AYG A 1 792 UNP B3Y963 B3Y963_GEOSE 1 792 SEQADV 3AYG LEU A 793 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG GLU A 794 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG HIS A 795 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG HIS A 796 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG HIS A 797 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG HIS A 798 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG HIS A 799 UNP B3Y963 EXPRESSION TAG SEQADV 3AYG HIS A 800 UNP B3Y963 EXPRESSION TAG SEQRES 1 A 800 MET GLU VAL ASN ARG THR VAL SER PRO ASN ILE GLN THR SEQRES 2 A 800 GLY ARG LYS THR THR ASN SER PHE LEU LYS SER ILE LEU SEQRES 3 A 800 ILE PHE THR ILE LEU ILE SER SER THR VAL LEU LEU VAL SEQRES 4 A 800 GLY GLY TYR TRP ILE PHE LYS GLU MET ALA PRO ARG PRO SEQRES 5 A 800 LYS GLU VAL ARG SER GLU SER GLY GLU VAL LEU MET THR SEQRES 6 A 800 LYS GLU THR ILE ILE GLY GLY GLN ALA VAL PHE GLN LYS SEQRES 7 A 800 TYR GLY LEU MET ASP TYR GLY THR VAL LEU GLY HIS GLY SEQRES 8 A 800 SER TYR MET GLY PRO ASP TYR THR ALA GLU ALA LEU LYS SEQRES 9 A 800 VAL TYR THR GLU GLY MET GLN ASP TYR LYS ALA LYS GLU SEQRES 10 A 800 ARG TYR ASN LYS PRO PHE ALA ASP LEU THR ASP ASP GLU SEQRES 11 A 800 LYS SER ILE ILE ARG GLU GLN VAL ILE LYS GLU MET ARG SEQRES 12 A 800 LYS ASN ARG TYR ASN PRO VAL THR ASP VAL LEU VAL LEU SEQRES 13 A 800 THR ASP ALA GLN VAL TYR GLY LEU GLU LYS VAL ARG ASP SEQRES 14 A 800 TYR TYR ARG ASP VAL PHE THR ASN GLY ASP GLY TRP GLY SEQRES 15 A 800 LEU LYS LYS GLY LEU ILE LYS GLU SER ASP MET PRO LYS SEQRES 16 A 800 ALA ASN ARG ALA TRP VAL ALA ASP SER ASP GLN ILE GLN SEQRES 17 A 800 GLN ILE ALA ASP PHE PHE PHE TRP THR ALA TRP LEU SER SEQRES 18 A 800 SER THR LEU ARG ILE GLY ASP GLU ILE THR TYR THR ASN SEQRES 19 A 800 ASN TRP PRO TYR TYR GLU ASP ALA GLY ASN THR MET SER SEQRES 20 A 800 PHE SER ALA VAL TRP TRP SER GLY ALA SER VAL THR ILE SEQRES 21 A 800 LEU ILE LEU PHE ILE GLY ILE ILE LEU TYR VAL PHE TYR SEQRES 22 A 800 ARG TYR GLN LEU SER MET GLN GLU ALA TYR ALA GLU GLY SEQRES 23 A 800 LYS PHE PRO VAL ILE ASP LEU ARG ARG GLN PRO LEU THR SEQRES 24 A 800 PRO SER GLN VAL LYS ALA GLY LYS TYR PHE VAL VAL VAL SEQRES 25 A 800 SER ALA LEU PHE PHE VAL GLN THR MET PHE GLY ALA LEU SEQRES 26 A 800 LEU ALA HIS TYR TYR THR GLU PRO ASP SER PHE PHE GLY SEQRES 27 A 800 ILE ASN TRP ILE TYR ASP ILE LEU PRO PHE ASN ILE ALA SEQRES 28 A 800 LYS GLY TYR HIS LEU GLN LEU ALA ILE PHE TRP ILE ALA SEQRES 29 A 800 THR ALA TRP LEU GLY MET GLY ILE PHE ILE ALA PRO LEU SEQRES 30 A 800 VAL GLY GLY GLN GLU PRO LYS LYS GLN GLY LEU LEU VAL SEQRES 31 A 800 ASP LEU LEU PHE TRP ALA LEU VAL VAL LEU VAL GLY GLY SEQRES 32 A 800 SER MET ILE GLY GLN TRP LEU GLY VAL ASN GLY TYR LEU SEQRES 33 A 800 GLY ASN GLU TRP PHE LEU LEU GLY HIS GLN GLY TRP GLU SEQRES 34 A 800 TYR ILE GLU LEU GLY ARG ILE TRP GLN ILE ILE LEU VAL SEQRES 35 A 800 VAL GLY MET LEU LEU TRP LEU PHE ILE VAL PHE ARG GLY SEQRES 36 A 800 VAL LYS ARG GLY LEU LYS ARG GLU SER ASP LYS GLY GLY SEQRES 37 A 800 LEU ILE HIS LEU LEU PHE TYR SER ALA ILE ALA VAL PRO SEQRES 38 A 800 PHE PHE TYR ILE PHE ALA PHE PHE ILE GLN PRO ASP THR SEQRES 39 A 800 ASN PHE THR MET ALA ASP PHE TRP ARG TRP TRP ILE ILE SEQRES 40 A 800 HIS LEU TRP VAL GLU GLY ILE PHE GLU VAL PHE ALA VAL SEQRES 41 A 800 VAL VAL ILE GLY PHE LEU LEU VAL GLN LEU ARG LEU VAL SEQRES 42 A 800 THR LYS LYS SER THR VAL ARG ALA LEU TYR PHE GLN PHE SEQRES 43 A 800 THR ILE LEU LEU GLY SER GLY VAL ILE GLY ILE GLY HIS SEQRES 44 A 800 HIS TYR TYR TYR ASN GLY SER PRO GLU VAL TRP ILE ALA SEQRES 45 A 800 LEU GLY ALA VAL PHE SER ALA LEU GLU VAL ILE PRO LEU SEQRES 46 A 800 THR LEU LEU ILE LEU GLU ALA TYR GLU GLN TYR LYS MET SEQRES 47 A 800 MET ARG ASP GLY GLY ALA ASN PHE PRO TYR LYS ALA THR SEQRES 48 A 800 PHE TRP PHE LEU ILE SER THR ALA ILE TRP ASN LEU VAL SEQRES 49 A 800 GLY ALA GLY VAL PHE GLY PHE LEU ILE ASN LEU PRO ALA SEQRES 50 A 800 VAL SER TYR PHE GLU HIS GLY GLN PHE LEU THR PRO ALA SEQRES 51 A 800 HIS GLY HIS ALA ALA MET MET GLY VAL TYR GLY MET PHE SEQRES 52 A 800 ALA ILE ALA VAL LEU LEU TYR SER LEU ARG ASN ILE VAL SEQRES 53 A 800 LYS PRO GLU ALA TRP ASN ASP LYS TRP LEU LYS PHE SER SEQRES 54 A 800 CYS TRP MET LEU ASN ILE GLY LEU ALA GLY MET VAL VAL SEQRES 55 A 800 ILE THR LEU LEU PRO VAL GLY ILE LEU GLN MET LYS GLU SEQRES 56 A 800 ALA PHE ILE HIS GLY TYR TRP ALA SER ARG SER PRO SER SEQRES 57 A 800 PHE LEU GLN GLN ASP VAL VAL GLN ASN LEU LEU LEU VAL SEQRES 58 A 800 ARG ALA VAL PRO ASP THR ILE PHE LEU ILE GLY VAL VAL SEQRES 59 A 800 ALA LEU LEU VAL PHE ALA ILE LYS ALA LEU PHE HIS LEU SEQRES 60 A 800 ARG LYS PRO THR HIS GLY GLU GLY GLU GLU LEU PRO VAL SEQRES 61 A 800 ALA ASN HIS TRP MET LYS ASP ARG LEU LYS ASN SER LEU SEQRES 62 A 800 GLU HIS HIS HIS HIS HIS HIS HET HEM A 801 43 HET HEM A 802 43 HET ZN A 803 1 HET CA A 804 1 HET BOG A 805 20 HET BOG A 806 20 HET BOG A 807 20 HET LOP A 809 45 HET LOP A 810 45 HET HQO A 811 19 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM LOP (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1- HETNAM 2 LOP [(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE HETNAM HQO 2-HEPTYL-4-HYDROXY QUINOLINE N-OXIDE HETSYN HEM HEME HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN LOP LAURYL OLEYL PHOSPHATIDYL ETHANOLAMINE HETSYN HQO 2-HEPTYL-1-OXY-QUINOLIN-4-OL FORMUL 2 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ZN ZN 2+ FORMUL 5 CA CA 2+ FORMUL 6 BOG 3(C14 H28 O6) FORMUL 9 LOP 2(C35 H68 N O8 P) FORMUL 11 HQO C16 H21 N O2 FORMUL 12 HOH *113(H2 O) HELIX 1 1 ASN A 19 MET A 48 1 30 HELIX 2 2 THR A 65 TYR A 79 1 15 HELIX 3 3 GLY A 80 TYR A 84 5 5 HELIX 4 4 ASP A 97 ALA A 115 1 19 HELIX 5 5 THR A 127 ARG A 143 1 17 HELIX 6 6 THR A 157 GLY A 178 1 22 HELIX 7 7 LYS A 189 MET A 193 5 5 HELIX 8 8 ASP A 205 THR A 223 1 19 HELIX 9 9 TYR A 239 GLY A 243 5 5 HELIX 10 10 SER A 247 TYR A 275 1 29 HELIX 11 11 ASP A 292 GLN A 296 5 5 HELIX 12 12 THR A 299 TYR A 330 1 32 HELIX 13 13 ASN A 340 LEU A 346 1 7 HELIX 14 14 PRO A 347 GLY A 380 1 34 HELIX 15 15 LYS A 385 GLY A 414 1 30 HELIX 16 16 GLU A 419 GLY A 424 1 6 HELIX 17 17 GLY A 434 GLU A 463 1 30 HELIX 18 18 GLY A 468 ILE A 485 1 18 HELIX 19 19 PHE A 486 ILE A 490 5 5 HELIX 20 20 ASN A 495 HIS A 508 1 14 HELIX 21 21 TRP A 510 VAL A 517 1 8 HELIX 22 22 VAL A 517 LEU A 530 1 14 HELIX 23 23 THR A 534 ILE A 557 1 24 HELIX 24 24 GLY A 558 TYR A 562 5 5 HELIX 25 25 GLU A 568 LEU A 580 1 13 HELIX 26 26 GLU A 581 LEU A 587 1 7 HELIX 27 27 LEU A 588 GLY A 602 1 15 HELIX 28 28 TYR A 608 GLY A 625 1 18 HELIX 29 29 GLY A 627 ILE A 633 1 7 HELIX 30 30 LEU A 635 HIS A 643 1 9 HELIX 31 31 PHE A 646 VAL A 676 1 31 HELIX 32 32 LYS A 677 TRP A 681 5 5 HELIX 33 33 ASP A 683 THR A 704 1 22 HELIX 34 34 THR A 704 GLY A 720 1 17 HELIX 35 35 GLY A 720 ARG A 725 1 6 HELIX 36 36 SER A 726 GLN A 732 1 7 HELIX 37 37 GLN A 732 VAL A 741 1 10 HELIX 38 38 ARG A 742 LYS A 762 1 21 HELIX 39 39 ALA A 763 LEU A 767 5 5 SHEET 1 A 4 VAL A 62 MET A 64 0 SHEET 2 A 4 GLU A 54 ARG A 56 -1 N VAL A 55 O MET A 64 SHEET 3 A 4 VAL A 153 VAL A 155 1 O LEU A 154 N ARG A 56 SHEET 4 A 4 TYR A 147 ASN A 148 -1 N ASN A 148 O VAL A 153 SHEET 1 B 2 THR A 86 VAL A 87 0 SHEET 2 B 2 HIS A 90 GLY A 91 -1 O HIS A 90 N VAL A 87 LINK O GLY A 91 CA CA A 804 1555 1555 2.46 LINK OH TYR A 93 CA CA A 804 1555 1555 2.69 LINK NE2 HIS A 355 FE HEM A 801 1555 1555 2.01 LINK OE1 GLU A 429 CA CA A 804 1555 1555 2.68 LINK OE2 GLU A 429 CA CA A 804 1555 1555 2.69 LINK ND1 HIS A 508 ZN ZN A 803 1555 1555 2.19 LINK NE2 HIS A 559 ZN ZN A 803 1555 1555 2.19 LINK NE2 HIS A 560 ZN ZN A 803 1555 1555 2.25 LINK NE2 HIS A 651 FE HEM A 802 1555 1555 2.19 LINK NE2 HIS A 653 FE HEM A 801 1555 1555 2.28 LINK O2D HEM A 801 CA CA A 804 1555 1555 2.78 LINK O2A HEM A 802 CA CA A 804 1555 1555 2.60 LINK O1A HEM A 802 CA CA A 804 1555 1555 3.09 LINK FE HEM A 802 O HOH A 978 1555 1555 2.74 LINK ZN ZN A 803 O HOH A 929 1555 1555 2.63 LINK ZN ZN A 803 O HOH A 978 1555 1555 2.12 LINK CA CA A 804 O HOH A 979 1555 1555 2.50 CISPEP 1 TRP A 236 PRO A 237 0 0.04 CRYST1 110.516 149.089 151.590 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006597 0.00000