HEADER TOXIN 02-JUN-11 3AZW TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: D/C MOSAIC NEUROTOXIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN(RESIDUES 856-1285); COMPND 5 SYNONYM: NEUROTOXIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: BONT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS BETA-TREFOIL FOLD, BETA-SHEET JELLYROLL FOLD, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NUEMKET,Y.TANAKA,K.TSUKAMOTO,T.TSUJI,K.NAKAMURA,S.KOZAKI,M.YAO, AUTHOR 2 I.TANAKA REVDAT 3 13-MAR-24 3AZW 1 REMARK SEQADV REVDAT 2 11-OCT-17 3AZW 1 REMARK REVDAT 1 28-DEC-11 3AZW 0 JRNL AUTH N.NUEMKET,Y.TANAKA,K.TSUKAMOTO,T.TSUJI,K.NAKAMURA,S.KOZAKI, JRNL AUTH 2 M.YAO,I.TANAKA JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSES OF THE RECEPTOR BINDING JRNL TITL 2 DOMAIN OF BOTULINUM D/C MOSAIC NEUROTOXIN: INSIGHT INTO THE JRNL TITL 3 GANGLIOSIDE BINDING MECHANISM JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 411 433 2011 JRNL REFN ISSN 0006-291X JRNL PMID 21749855 JRNL DOI 10.1016/J.BBRC.2011.06.173 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0091 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1424 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.455 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.385 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.510 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7018 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4698 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9498 ; 1.026 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11432 ; 1.017 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 832 ; 5.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;37.473 ;24.972 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1224 ;16.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7794 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1482 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3AZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000029902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27614 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.08 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.92800 REMARK 200 FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 1.6M MAGNESIUM SULFATE, 1M REMARK 280 SODIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.97900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.01950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.01950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.97900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 856 REMARK 465 ILE A 857 REMARK 465 THR A 1052 REMARK 465 GLY A 1053 REMARK 465 LEU A 1054 REMARK 465 ILE A 1055 REMARK 465 THR A 1056 REMARK 465 SER A 1057 REMARK 465 ASP A 1058 REMARK 465 SER A 1059 REMARK 465 ASP A 1060 REMARK 465 GLU A 1285 REMARK 465 LEU A 1286 REMARK 465 GLU A 1287 REMARK 465 HIS A 1288 REMARK 465 HIS A 1289 REMARK 465 HIS A 1290 REMARK 465 HIS A 1291 REMARK 465 HIS A 1292 REMARK 465 HIS A 1293 REMARK 465 MET B 856 REMARK 465 ILE B 857 REMARK 465 THR B 1052 REMARK 465 GLY B 1053 REMARK 465 LEU B 1054 REMARK 465 ILE B 1055 REMARK 465 THR B 1056 REMARK 465 SER B 1057 REMARK 465 ASP B 1058 REMARK 465 SER B 1059 REMARK 465 ASP B 1060 REMARK 465 GLU B 1285 REMARK 465 LEU B 1286 REMARK 465 GLU B 1287 REMARK 465 HIS B 1288 REMARK 465 HIS B 1289 REMARK 465 HIS B 1290 REMARK 465 HIS B 1291 REMARK 465 HIS B 1292 REMARK 465 HIS B 1293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 886 81.84 45.73 REMARK 500 ASP A 912 -121.79 57.37 REMARK 500 GLU A 932 -101.61 -94.31 REMARK 500 LYS A 959 -68.36 -105.79 REMARK 500 ASN A 960 65.44 -117.59 REMARK 500 SER A 970 -132.99 49.58 REMARK 500 ASN A1139 64.59 -66.83 REMARK 500 THR A1156 -16.55 81.02 REMARK 500 ILE A1170 -77.46 -89.58 REMARK 500 ASP A1171 -102.24 -90.21 REMARK 500 SER A1239 -160.49 -128.63 REMARK 500 TYR A1251 -51.64 -126.94 REMARK 500 GLU A1265 -59.96 76.23 REMARK 500 ASN B 877 -19.86 81.08 REMARK 500 ASN B 886 119.20 -31.53 REMARK 500 ASP B 912 -74.67 -91.37 REMARK 500 ASP B 913 52.56 -105.35 REMARK 500 ASN B 960 73.11 -119.67 REMARK 500 SER B 970 -132.82 50.54 REMARK 500 TYR B1115 55.65 -141.59 REMARK 500 ILE B1149 -66.49 -122.52 REMARK 500 ASP B1155 11.49 -140.16 REMARK 500 THR B1156 -12.70 88.01 REMARK 500 ILE B1170 -78.64 -90.81 REMARK 500 ASP B1171 -86.00 -83.60 REMARK 500 SER B1239 -161.21 -127.47 REMARK 500 TYR B1251 -81.31 -96.65 REMARK 500 ILE B1264 -74.98 -118.78 REMARK 500 ALA B1283 -80.35 -98.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N7L RELATED DB: PDB REMARK 900 IDENTICAL PROTEIN REMARK 900 RELATED ID: 3AZV RELATED DB: PDB REMARK 900 IDENTICAL PROTEIN DBREF 3AZW A 856 1285 UNP A5JGM8 A5JGM8_CLOBO 856 1285 DBREF 3AZW B 856 1285 UNP A5JGM8 A5JGM8_CLOBO 856 1285 SEQADV 3AZW LEU A 1286 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW GLU A 1287 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS A 1288 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS A 1289 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS A 1290 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS A 1291 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS A 1292 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS A 1293 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW LEU B 1286 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW GLU B 1287 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS B 1288 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS B 1289 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS B 1290 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS B 1291 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS B 1292 UNP A5JGM8 EXPRESSION TAG SEQADV 3AZW HIS B 1293 UNP A5JGM8 EXPRESSION TAG SEQRES 1 A 438 MET ILE ASN GLU TYR PHE ASN SER ILE ASN ASP SER LYS SEQRES 2 A 438 ILE LEU SER LEU GLN ASN LYS LYS ASN THR LEU MET ASP SEQRES 3 A 438 THR SER GLY TYR ASN ALA GLU VAL ARG VAL GLU GLY ASN SEQRES 4 A 438 VAL GLN LEU ASN PRO ILE PHE PRO PHE ASP PHE LYS LEU SEQRES 5 A 438 GLY SER SER GLY ASP ASP ARG GLY LYS VAL ILE VAL THR SEQRES 6 A 438 GLN ASN GLU ASN ILE VAL TYR ASN ALA MET TYR GLU SER SEQRES 7 A 438 PHE SER ILE SER PHE TRP ILE ARG ILE ASN LYS TRP VAL SEQRES 8 A 438 SER ASN LEU PRO GLY TYR THR ILE ILE ASP SER VAL LYS SEQRES 9 A 438 ASN ASN SER GLY TRP SER ILE GLY ILE ILE SER ASN PHE SEQRES 10 A 438 LEU VAL PHE THR LEU LYS GLN ASN GLU ASN SER GLU GLN SEQRES 11 A 438 ASP ILE ASN PHE SER TYR ASP ILE SER LYS ASN ALA ALA SEQRES 12 A 438 GLY TYR ASN LYS TRP PHE PHE VAL THR ILE THR THR ASN SEQRES 13 A 438 MET MET GLY ASN MET MET ILE TYR ILE ASN GLY LYS LEU SEQRES 14 A 438 ILE ASP THR ILE LYS VAL LYS GLU LEU THR GLY ILE ASN SEQRES 15 A 438 PHE SER LYS THR ILE THR PHE GLN MET ASN LYS ILE PRO SEQRES 16 A 438 ASN THR GLY LEU ILE THR SER ASP SER ASP ASN ILE ASN SEQRES 17 A 438 MET TRP ILE ARG ASP PHE TYR ILE PHE ALA LYS GLU LEU SEQRES 18 A 438 ASP ASP LYS ASP ILE ASN ILE LEU PHE ASN SER LEU GLN SEQRES 19 A 438 TYR THR ASN VAL VAL LYS ASP TYR TRP GLY ASN ASP LEU SEQRES 20 A 438 ARG TYR ASP LYS GLU TYR TYR MET ILE ASN VAL ASN TYR SEQRES 21 A 438 MET ASN ARG TYR MET SER LYS LYS GLY ASN GLY ILE VAL SEQRES 22 A 438 PHE ASN THR ARG LYS ASN ASN ASN ASP PHE ASN GLU GLY SEQRES 23 A 438 TYR LYS ILE ILE ILE LYS ARG ILE ARG GLY ASN THR ASN SEQRES 24 A 438 ASP THR ARG VAL ARG GLY GLU ASN VAL LEU TYR PHE ASN SEQRES 25 A 438 THR THR ILE ASP ASN LYS GLN TYR SER LEU GLY MET TYR SEQRES 26 A 438 LYS PRO SER ARG ASN LEU GLY THR ASP LEU VAL PRO LEU SEQRES 27 A 438 GLY ALA LEU ASP GLN PRO MET ASP GLU ILE ARG LYS TYR SEQRES 28 A 438 GLY SER PHE ILE ILE GLN PRO CYS ASN THR PHE ASP TYR SEQRES 29 A 438 TYR ALA SER GLN LEU PHE LEU SER SER ASN ALA THR THR SEQRES 30 A 438 ASN ARG LEU GLY ILE LEU SER ILE GLY SER TYR SER PHE SEQRES 31 A 438 LYS LEU GLY ASP ASP TYR TRP PHE ASN HIS GLU TYR LEU SEQRES 32 A 438 ILE PRO VAL ILE LYS ILE GLU HIS TYR ALA SER LEU LEU SEQRES 33 A 438 GLU SER THR SER THR HIS TRP VAL PHE VAL PRO ALA SER SEQRES 34 A 438 GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 438 MET ILE ASN GLU TYR PHE ASN SER ILE ASN ASP SER LYS SEQRES 2 B 438 ILE LEU SER LEU GLN ASN LYS LYS ASN THR LEU MET ASP SEQRES 3 B 438 THR SER GLY TYR ASN ALA GLU VAL ARG VAL GLU GLY ASN SEQRES 4 B 438 VAL GLN LEU ASN PRO ILE PHE PRO PHE ASP PHE LYS LEU SEQRES 5 B 438 GLY SER SER GLY ASP ASP ARG GLY LYS VAL ILE VAL THR SEQRES 6 B 438 GLN ASN GLU ASN ILE VAL TYR ASN ALA MET TYR GLU SER SEQRES 7 B 438 PHE SER ILE SER PHE TRP ILE ARG ILE ASN LYS TRP VAL SEQRES 8 B 438 SER ASN LEU PRO GLY TYR THR ILE ILE ASP SER VAL LYS SEQRES 9 B 438 ASN ASN SER GLY TRP SER ILE GLY ILE ILE SER ASN PHE SEQRES 10 B 438 LEU VAL PHE THR LEU LYS GLN ASN GLU ASN SER GLU GLN SEQRES 11 B 438 ASP ILE ASN PHE SER TYR ASP ILE SER LYS ASN ALA ALA SEQRES 12 B 438 GLY TYR ASN LYS TRP PHE PHE VAL THR ILE THR THR ASN SEQRES 13 B 438 MET MET GLY ASN MET MET ILE TYR ILE ASN GLY LYS LEU SEQRES 14 B 438 ILE ASP THR ILE LYS VAL LYS GLU LEU THR GLY ILE ASN SEQRES 15 B 438 PHE SER LYS THR ILE THR PHE GLN MET ASN LYS ILE PRO SEQRES 16 B 438 ASN THR GLY LEU ILE THR SER ASP SER ASP ASN ILE ASN SEQRES 17 B 438 MET TRP ILE ARG ASP PHE TYR ILE PHE ALA LYS GLU LEU SEQRES 18 B 438 ASP ASP LYS ASP ILE ASN ILE LEU PHE ASN SER LEU GLN SEQRES 19 B 438 TYR THR ASN VAL VAL LYS ASP TYR TRP GLY ASN ASP LEU SEQRES 20 B 438 ARG TYR ASP LYS GLU TYR TYR MET ILE ASN VAL ASN TYR SEQRES 21 B 438 MET ASN ARG TYR MET SER LYS LYS GLY ASN GLY ILE VAL SEQRES 22 B 438 PHE ASN THR ARG LYS ASN ASN ASN ASP PHE ASN GLU GLY SEQRES 23 B 438 TYR LYS ILE ILE ILE LYS ARG ILE ARG GLY ASN THR ASN SEQRES 24 B 438 ASP THR ARG VAL ARG GLY GLU ASN VAL LEU TYR PHE ASN SEQRES 25 B 438 THR THR ILE ASP ASN LYS GLN TYR SER LEU GLY MET TYR SEQRES 26 B 438 LYS PRO SER ARG ASN LEU GLY THR ASP LEU VAL PRO LEU SEQRES 27 B 438 GLY ALA LEU ASP GLN PRO MET ASP GLU ILE ARG LYS TYR SEQRES 28 B 438 GLY SER PHE ILE ILE GLN PRO CYS ASN THR PHE ASP TYR SEQRES 29 B 438 TYR ALA SER GLN LEU PHE LEU SER SER ASN ALA THR THR SEQRES 30 B 438 ASN ARG LEU GLY ILE LEU SER ILE GLY SER TYR SER PHE SEQRES 31 B 438 LYS LEU GLY ASP ASP TYR TRP PHE ASN HIS GLU TYR LEU SEQRES 32 B 438 ILE PRO VAL ILE LYS ILE GLU HIS TYR ALA SER LEU LEU SEQRES 33 B 438 GLU SER THR SER THR HIS TRP VAL PHE VAL PRO ALA SER SEQRES 34 B 438 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 1 5 HET SO4 A 2 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *12(H2 O) HELIX 1 1 ASN A 858 SER A 867 1 10 HELIX 2 2 ASN A 922 MET A 930 1 9 HELIX 3 3 ASP A 1077 LEU A 1088 1 12 HELIX 4 4 ASN A 1114 MET A 1116 5 3 HELIX 5 5 PRO A 1199 GLY A 1207 1 9 HELIX 6 6 SER A 1269 THR A 1276 5 8 HELIX 7 7 ASN B 858 SER B 867 1 10 HELIX 8 8 ASN B 922 GLU B 932 1 11 HELIX 9 9 ASP B 1077 LEU B 1088 1 12 HELIX 10 10 ASN B 1114 MET B 1116 5 3 HELIX 11 11 PRO B 1199 GLY B 1207 1 9 HELIX 12 12 SER B 1269 THR B 1276 5 8 SHEET 1 A 5 THR A 878 ASP A 881 0 SHEET 2 A 5 LYS A 868 LYS A 875 -1 N GLN A 873 O MET A 880 SHEET 3 A 5 ASN A1063 PHE A1072 -1 O PHE A1069 N LEU A 872 SHEET 4 A 5 PHE A 905 GLY A 908 -1 N LEU A 907 O MET A1064 SHEET 5 A 5 GLN A 896 LEU A 897 -1 N GLN A 896 O LYS A 906 SHEET 1 B 7 THR A 878 ASP A 881 0 SHEET 2 B 7 LYS A 868 LYS A 875 -1 N GLN A 873 O MET A 880 SHEET 3 B 7 ASN A1063 PHE A1072 -1 O PHE A1069 N LEU A 872 SHEET 4 B 7 SER A 933 ASN A 943 -1 N SER A 937 O TYR A1070 SHEET 5 B 7 PHE A1004 ASN A1011 -1 O ILE A1008 N ILE A 936 SHEET 6 B 7 ASN A1015 ILE A1020 -1 O TYR A1019 N THR A1007 SHEET 7 B 7 LYS A1023 LYS A1029 -1 O ILE A1025 N ILE A1018 SHEET 1 C 7 GLU A 888 GLU A 892 0 SHEET 2 C 7 LYS A 916 THR A 920 -1 O ILE A 918 N ARG A 890 SHEET 3 C 7 THR A1041 LYS A1048 -1 O PHE A1044 N VAL A 917 SHEET 4 C 7 TYR A 952 VAL A 958 -1 N ASP A 956 O THR A1043 SHEET 5 C 7 GLY A 963 ILE A 969 -1 O ILE A 966 N ILE A 955 SHEET 6 C 7 PHE A 972 LYS A 978 -1 O LYS A 978 N GLY A 963 SHEET 7 C 7 GLU A 984 SER A 990 -1 O ILE A 987 N PHE A 975 SHEET 1 D13 VAL A1163 THR A1169 0 SHEET 2 D13 GLN A1174 MET A1179 -1 O TYR A1175 N THR A1168 SHEET 3 D13 LEU A1190 LEU A1196 -1 O GLY A1194 N GLY A1178 SHEET 4 D13 HIS A1255 ILE A1264 -1 O ILE A1262 N VAL A1191 SHEET 5 D13 ARG A1234 PHE A1245 -1 N SER A1239 O VAL A1261 SHEET 6 D13 TYR A1220 SER A1227 -1 N LEU A1224 O LEU A1238 SHEET 7 D13 VAL A1163 THR A1169 0 SHEET 8 D13 ILE A1144 ARG A1150 -1 N LYS A1147 O TYR A1165 SHEET 9 D13 GLU A1107 ASN A1112 -1 N TYR A1108 O ILE A1144 SHEET 10 D13 TRP A1278 PRO A1282 -1 O VAL A1281 N TYR A1109 SHEET 11 D13 TYR A1220 SER A1227 -1 N SER A1222 O TRP A1278 SHEET 12 D13 PHE A1209 ASN A1215 -1 N GLN A1212 O GLN A1223 SHEET 13 D13 TYR A1220 SER A1227 -1 O GLN A1223 N GLN A1212 SHEET 1 E 2 ARG A1118 LYS A1123 0 SHEET 2 E 2 GLY A1126 THR A1131 -1 O ASN A1130 N TYR A1119 SHEET 1 F 5 THR B 878 ASP B 881 0 SHEET 2 F 5 LYS B 868 LYS B 875 -1 N GLN B 873 O MET B 880 SHEET 3 F 5 ASN B1063 PHE B1072 -1 O PHE B1069 N LEU B 872 SHEET 4 F 5 PHE B 905 GLY B 908 -1 N LEU B 907 O MET B1064 SHEET 5 F 5 GLN B 896 LEU B 897 -1 N GLN B 896 O LYS B 906 SHEET 1 G 7 THR B 878 ASP B 881 0 SHEET 2 G 7 LYS B 868 LYS B 875 -1 N GLN B 873 O MET B 880 SHEET 3 G 7 ASN B1063 PHE B1072 -1 O PHE B1069 N LEU B 872 SHEET 4 G 7 PHE B 934 ILE B 942 -1 N SER B 937 O TYR B1070 SHEET 5 G 7 PHE B1004 THR B1010 -1 O ILE B1008 N ILE B 936 SHEET 6 G 7 MET B1016 ILE B1020 -1 O TYR B1019 N THR B1007 SHEET 7 G 7 LYS B1023 ILE B1028 -1 O ILE B1028 N MET B1016 SHEET 1 H 7 GLU B 888 GLU B 892 0 SHEET 2 H 7 LYS B 916 THR B 920 -1 O ILE B 918 N ARG B 890 SHEET 3 H 7 THR B1041 LYS B1048 -1 O PHE B1044 N VAL B 917 SHEET 4 H 7 TYR B 952 VAL B 958 -1 N ASP B 956 O THR B1043 SHEET 5 H 7 GLY B 963 ILE B 969 -1 O ILE B 966 N ILE B 955 SHEET 6 H 7 PHE B 972 ASN B 980 -1 O VAL B 974 N GLY B 967 SHEET 7 H 7 SER B 983 SER B 990 -1 O ILE B 987 N PHE B 975 SHEET 1 I13 VAL B1163 THR B1169 0 SHEET 2 I13 GLN B1174 MET B1179 -1 O TYR B1175 N THR B1168 SHEET 3 I13 LEU B1190 LEU B1196 -1 O GLY B1194 N GLY B1178 SHEET 4 I13 HIS B1255 LYS B1263 -1 O ILE B1262 N VAL B1191 SHEET 5 I13 ARG B1234 PHE B1245 -1 N SER B1239 O VAL B1261 SHEET 6 I13 TYR B1220 SER B1227 -1 N LEU B1224 O LEU B1238 SHEET 7 I13 VAL B1163 THR B1169 0 SHEET 8 I13 ILE B1144 ARG B1150 -1 N LYS B1147 O TYR B1165 SHEET 9 I13 GLU B1107 ASN B1112 -1 N TYR B1108 O ILE B1144 SHEET 10 I13 TRP B1278 PRO B1282 -1 O VAL B1281 N TYR B1109 SHEET 11 I13 TYR B1220 SER B1227 -1 N SER B1222 O TRP B1278 SHEET 12 I13 PHE B1209 ASN B1215 -1 N ILE B1210 O PHE B1225 SHEET 13 I13 TYR B1220 SER B1227 -1 O PHE B1225 N ILE B1210 SHEET 1 J 2 ARG B1118 LYS B1123 0 SHEET 2 J 2 GLY B1126 THR B1131 -1 O ASN B1130 N TYR B1119 CISPEP 1 PHE A 901 PRO A 902 0 7.84 CISPEP 2 PHE B 901 PRO B 902 0 7.33 SITE 1 AC1 5 THR A1156 TYR A1251 TRP A1252 PHE A1253 SITE 2 AC1 5 HIS A1255 SITE 1 AC2 4 ARG A1103 LYS A1106 ARG A1184 ASN A1254 CRYST1 57.958 141.550 162.039 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006171 0.00000