HEADER SIGNALING PROTEIN/METAL BINDING PROTEIN 07-JUN-11 3B0A TITLE CRYSTAL STRUCTURE OF THE MOUSE HOIL1-L-NZF IN COMPLEX WITH LINEAR DI- TITLE 2 UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-C; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: LINEAR DI UBIQUITIN, UNP RESIDUES 1-152; COMPND 5 SYNONYM: UBIQUITIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 9 CHAIN: B, E; COMPND 10 FRAGMENT: UNP RESIDUES 192-250; COMPND 11 SYNONYM: HEME-OXIDIZED IRP2 UBIQUITIN LIGASE 1 HOMOLOG, HOIL-1, COMPND 12 UBCM4-INTERACTING PROTEIN 28, UBIQUITIN-CONJUGATING ENZYME 7- COMPND 13 INTERACTING PROTEIN 3; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: RBCK1, RBCK, UBCE7IP3, UIP28; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCOLD GST KEYWDS PROTEIN COMPLEX, SIGNALING PROTEIN-METAL BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SATO,H.FUJITA,A.YOSHIKAWA,M.YAMASHITA,A.YAMAGATA,S.E.KAISER,K.IWAI, AUTHOR 2 S.FUKAI REVDAT 3 01-NOV-23 3B0A 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3B0A 1 JRNL REVDAT 1 14-DEC-11 3B0A 0 JRNL AUTH Y.SATO,H.FUJITA,A.YOSHIKAWA,M.YAMASHITA,A.YAMAGATA, JRNL AUTH 2 S.E.KAISER,K.IWAI,S.FUKAI JRNL TITL SPECIFIC RECOGNITION OF LINEAR UBIQUITIN CHAINS BY THE NPL4 JRNL TITL 2 ZINC FINGER (NZF) DOMAIN OF THE HOIL-1L SUBUNIT OF THE JRNL TITL 3 LINEAR UBIQUITIN CHAIN ASSEMBLY COMPLEX JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 20520 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22139374 JRNL DOI 10.1073/PNAS.1109088108 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 43879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4506 - 5.8995 0.92 2518 124 0.1610 0.1746 REMARK 3 2 5.8995 - 4.6841 0.99 2669 159 0.1411 0.2065 REMARK 3 3 4.6841 - 4.0925 0.99 2703 158 0.1317 0.1734 REMARK 3 4 4.0925 - 3.7185 0.99 2696 144 0.1394 0.1662 REMARK 3 5 3.7185 - 3.4521 0.99 2705 147 0.1496 0.2260 REMARK 3 6 3.4521 - 3.2486 0.99 2696 125 0.1734 0.2184 REMARK 3 7 3.2486 - 3.0859 0.99 2711 143 0.1858 0.2122 REMARK 3 8 3.0859 - 2.9516 0.99 2724 132 0.1952 0.2567 REMARK 3 9 2.9516 - 2.8380 0.98 2674 154 0.1975 0.2586 REMARK 3 10 2.8380 - 2.7401 0.98 2687 122 0.1949 0.2249 REMARK 3 11 2.7401 - 2.6544 0.97 2678 117 0.1903 0.2469 REMARK 3 12 2.6544 - 2.5786 0.97 2639 154 0.1902 0.2732 REMARK 3 13 2.5786 - 2.5107 0.97 2632 151 0.1819 0.2415 REMARK 3 14 2.5107 - 2.4494 0.96 2658 121 0.1891 0.2723 REMARK 3 15 2.4494 - 2.3938 0.96 2604 142 0.1856 0.2372 REMARK 3 16 2.3938 - 2.3428 0.95 2551 154 0.1799 0.2256 REMARK 3 17 2.3428 - 2.2960 0.94 2603 146 0.1886 0.2476 REMARK 3 18 2.2960 - 2.2526 0.92 2528 118 0.2104 0.2685 REMARK 3 19 2.2526 - 2.2124 0.90 2455 130 0.2027 0.2440 REMARK 3 20 2.2124 - 2.1749 0.94 2529 168 0.1999 0.2517 REMARK 3 21 2.1749 - 2.1398 0.95 2527 154 0.2186 0.2850 REMARK 3 22 2.1398 - 2.1069 0.93 2540 133 0.2272 0.3120 REMARK 3 23 2.1069 - 2.0759 0.93 2583 138 0.2302 0.2650 REMARK 3 24 2.0759 - 2.0467 0.91 2456 99 0.2497 0.2938 REMARK 3 25 2.0467 - 2.0190 0.92 2551 147 0.2460 0.2947 REMARK 3 26 2.0190 - 1.9928 0.92 2434 126 0.2500 0.2745 REMARK 3 27 1.9928 - 1.9679 0.90 2518 135 0.2666 0.2770 REMARK 3 28 1.9679 - 1.9442 0.89 2407 137 0.2797 0.3096 REMARK 3 29 1.9442 - 1.9216 0.88 2354 140 0.3129 0.3166 REMARK 3 30 1.9216 - 1.9000 0.85 2316 113 0.3260 0.3447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 44.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.08900 REMARK 3 B22 (A**2) : 5.08900 REMARK 3 B33 (A**2) : -10.17790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3426 REMARK 3 ANGLE : 1.055 4617 REMARK 3 CHIRALITY : 0.070 515 REMARK 3 PLANARITY : 0.004 608 REMARK 3 DIHEDRAL : 16.664 1366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -44.2422 40.3559 -0.9373 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.2330 REMARK 3 T33: 0.2064 T12: -0.0249 REMARK 3 T13: -0.0158 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.3784 L22: 2.5768 REMARK 3 L33: 3.5993 L12: -0.1673 REMARK 3 L13: -0.1254 L23: 2.2115 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.1061 S13: -0.0987 REMARK 3 S21: -0.0108 S22: -0.0201 S23: 0.1535 REMARK 3 S31: 0.0060 S32: -0.0594 S33: 0.0535 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -29.3185 36.1355 0.0945 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1605 REMARK 3 T33: 0.1628 T12: -0.0519 REMARK 3 T13: 0.0017 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 3.3040 L22: 4.1653 REMARK 3 L33: 1.8423 L12: -0.5866 REMARK 3 L13: 0.3229 L23: 0.1491 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: -0.2212 S13: -0.4257 REMARK 3 S21: -0.1534 S22: -0.0077 S23: -0.0469 REMARK 3 S31: 0.4314 S32: 0.0810 S33: 0.0210 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -43.4986 59.8793 -24.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.3306 REMARK 3 T33: 0.2619 T12: 0.0109 REMARK 3 T13: -0.0101 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.7649 L22: 1.8613 REMARK 3 L33: 4.4280 L12: 0.5723 REMARK 3 L13: 0.5481 L23: 2.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0148 S13: 0.1375 REMARK 3 S21: -0.0753 S22: -0.1078 S23: 0.2222 REMARK 3 S31: -0.2079 S32: -0.4268 S33: 0.1729 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -27.8711 62.9911 -26.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2068 REMARK 3 T33: 0.1329 T12: -0.0668 REMARK 3 T13: -0.0170 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.3267 L22: 4.2037 REMARK 3 L33: 1.8815 L12: 1.0743 REMARK 3 L13: 0.0202 L23: 0.6811 REMARK 3 S TENSOR REMARK 3 S11: -0.1144 S12: 0.1932 S13: 0.1925 REMARK 3 S21: -0.0275 S22: 0.0854 S23: -0.1678 REMARK 3 S31: -0.3823 S32: 0.0796 S33: 0.0270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000029916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3B08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.45M TRI-AMMONIUM CITRATE (PH 7.0), REMARK 280 3% 1,6-DIAMINOHEXANE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 20K, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SD MET E 191 LIES ON A SPECIAL POSITION. REMARK 375 CE MET E 191 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 89 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 310 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 178 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 GLY B 187 REMARK 465 PRO B 188 REMARK 465 GLY B 189 REMARK 465 HIS B 190 REMARK 465 TYR B 248 REMARK 465 GLN B 249 REMARK 465 GLN B 250 REMARK 465 GLN E 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 215 O HOH B 252 2.07 REMARK 500 O GLY A 10 O HOH A 170 2.09 REMARK 500 O HOH B 252 O HOH B 257 2.10 REMARK 500 SG CYS E 215 O HOH E 317 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG MET E 191 SD MET E 191 4565 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET E 191 CB - CG - SD ANGL. DEV. = 22.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 9 16.39 -54.78 REMARK 500 CYS B 215 -5.17 77.25 REMARK 500 CYS E 215 -4.84 75.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 197 SG REMARK 620 2 CYS B 200 SG 115.4 REMARK 620 3 CYS B 211 SG 105.9 99.5 REMARK 620 4 CYS B 214 SG 99.2 122.7 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 197 SG REMARK 620 2 CYS E 200 SG 111.9 REMARK 620 3 CYS E 211 SG 108.3 99.7 REMARK 620 4 CYS E 214 SG 101.9 121.3 113.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B08 RELATED DB: PDB DBREF 3B0A A 1 152 UNP P0CG48 UBC_HUMAN 1 152 DBREF 3B0A B 192 250 UNP Q9WUB0 HOIL1_MOUSE 192 250 DBREF 3B0A D 1 152 UNP P0CG48 UBC_HUMAN 1 152 DBREF 3B0A E 192 250 UNP Q9WUB0 HOIL1_MOUSE 192 250 SEQADV 3B0A GLY B 187 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A PRO B 188 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A GLY B 189 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A HIS B 190 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A MET B 191 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A GLY E 187 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A PRO E 188 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A GLY E 189 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A HIS E 190 UNP Q9WUB0 EXPRESSION TAG SEQADV 3B0A MET E 191 UNP Q9WUB0 EXPRESSION TAG SEQRES 1 A 152 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 A 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 A 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 A 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 A 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 A 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 A 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 64 GLY PRO GLY HIS MET PRO VAL GLY TRP GLN CYS PRO GLY SEQRES 2 B 64 CYS THR PHE ILE ASN LYS PRO THR ARG PRO GLY CYS GLU SEQRES 3 B 64 MET CYS CYS ARG ALA ARG PRO GLU THR TYR GLN ILE PRO SEQRES 4 B 64 ALA SER TYR GLN PRO ASP GLU GLU GLU ARG ALA ARG LEU SEQRES 5 B 64 ALA GLY GLU GLU GLU ALA LEU ARG GLN TYR GLN GLN SEQRES 1 D 152 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 D 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 D 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 D 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 D 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 D 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 D 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 E 64 GLY PRO GLY HIS MET PRO VAL GLY TRP GLN CYS PRO GLY SEQRES 2 E 64 CYS THR PHE ILE ASN LYS PRO THR ARG PRO GLY CYS GLU SEQRES 3 E 64 MET CYS CYS ARG ALA ARG PRO GLU THR TYR GLN ILE PRO SEQRES 4 E 64 ALA SER TYR GLN PRO ASP GLU GLU GLU ARG ALA ARG LEU SEQRES 5 E 64 ALA GLY GLU GLU GLU ALA LEU ARG GLN TYR GLN GLN HET TAM A 153 11 HET ZN B 1 1 HET ZN E 1 1 HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETNAM ZN ZINC ION FORMUL 5 TAM C7 H17 N O3 FORMUL 6 ZN 2(ZN 2+) FORMUL 8 HOH *319(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 LEU A 56 ASN A 60 5 5 HELIX 4 4 THR A 98 GLY A 111 1 14 HELIX 5 5 PRO A 113 ASP A 115 5 3 HELIX 6 6 ASP B 231 GLN B 247 1 17 HELIX 7 7 THR D 22 GLY D 35 1 14 HELIX 8 8 PRO D 37 ASP D 39 5 3 HELIX 9 9 LEU D 56 ASN D 60 5 5 HELIX 10 10 THR D 98 GLY D 111 1 14 HELIX 11 11 PRO D 113 ASP D 115 5 3 HELIX 12 12 LEU D 132 ASN D 136 5 5 HELIX 13 13 ASP E 231 ARG E 246 1 16 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 B 5 THR A 88 VAL A 93 0 SHEET 2 B 5 MET A 77 THR A 83 -1 N MET A 77 O VAL A 93 SHEET 3 B 5 THR A 142 LEU A 147 1 O LEU A 143 N LYS A 82 SHEET 4 B 5 GLN A 117 PHE A 121 -1 N ARG A 118 O VAL A 146 SHEET 5 B 5 LYS A 124 GLN A 125 -1 O LYS A 124 N PHE A 121 SHEET 1 C 2 TRP B 195 GLN B 196 0 SHEET 2 C 2 ILE B 203 ASN B 204 -1 O ASN B 204 N TRP B 195 SHEET 1 D 5 THR D 12 GLU D 16 0 SHEET 2 D 5 GLN D 2 THR D 7 -1 N VAL D 5 O ILE D 13 SHEET 3 D 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 D 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 D 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SHEET 1 E 5 THR D 88 VAL D 93 0 SHEET 2 E 5 MET D 77 THR D 83 -1 N MET D 77 O VAL D 93 SHEET 3 E 5 THR D 142 LEU D 147 1 O LEU D 143 N LYS D 82 SHEET 4 E 5 GLN D 117 PHE D 121 -1 N ILE D 120 O HIS D 144 SHEET 5 E 5 LYS D 124 GLN D 125 -1 O LYS D 124 N PHE D 121 SHEET 1 F 2 TRP E 195 GLN E 196 0 SHEET 2 F 2 ILE E 203 ASN E 204 -1 O ASN E 204 N TRP E 195 LINK ZN ZN B 1 SG CYS B 197 1555 1555 2.36 LINK ZN ZN B 1 SG CYS B 200 1555 1555 2.25 LINK ZN ZN B 1 SG CYS B 211 1555 1555 2.36 LINK ZN ZN B 1 SG CYS B 214 1555 1555 2.32 LINK ZN ZN E 1 SG CYS E 197 1555 1555 2.37 LINK ZN ZN E 1 SG CYS E 200 1555 1555 2.33 LINK ZN ZN E 1 SG CYS E 211 1555 1555 2.40 LINK ZN ZN E 1 SG CYS E 214 1555 1555 2.27 SITE 1 AC1 8 ARG A 118 GLN A 125 ARG A 148 THR D 7 SITE 2 AC1 8 THR D 9 GLU D 34 ILE D 36 LEU D 71 SITE 1 AC2 4 CYS B 197 CYS B 200 CYS B 211 CYS B 214 SITE 1 AC3 4 CYS E 197 CYS E 200 CYS E 211 CYS E 214 CRYST1 113.650 113.650 75.663 90.00 90.00 120.00 P 6 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008799 0.005080 0.000000 0.00000 SCALE2 0.000000 0.010160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013216 0.00000