HEADER PROTEIN BINDING 09-JUN-11 3B0F TITLE CRYSTAL STRUCTURE OF THE UBA DOMAIN OF P62 AND ITS INTERACTION WITH TITLE 2 UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUESTOSOME-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UBA DOMAIN (UNP RESIDUES 391-438); COMPND 5 SYNONYM: STONE14, UBIQUITIN-BINDING PROTEIN P62; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SQSTM1, A170, STAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS UBIQUITIN, AUTOPHAGY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.ISOGAI,D.MORIMOTO,K.ARITA,S.UNZAI,T.TENNO,J.HASEGAWA,Y.SOU, AUTHOR 2 M.KOMATSU,K.TANAKA,M.SHIRAKAWA,H.TOCHIO REVDAT 4 13-MAR-24 3B0F 1 REMARK REVDAT 3 13-NOV-19 3B0F 1 JRNL REMARK SEQADV REVDAT 2 11-OCT-17 3B0F 1 REMARK REVDAT 1 29-JUN-11 3B0F 0 JRNL AUTH S.ISOGAI,D.MORIMOTO,K.ARITA,S.UNZAI,T.TENNO,J.HASEGAWA, JRNL AUTH 2 Y.S.SOU,M.KOMATSU,K.TANAKA,M.SHIRAKAWA,H.TOCHIO JRNL TITL CRYSTAL STRUCTURE OF THE UBIQUITIN-ASSOCIATED (UBA) DOMAIN JRNL TITL 2 OF P62 AND ITS INTERACTION WITH UBIQUITIN. JRNL REF J.BIOL.CHEM. V. 286 31864 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21715324 JRNL DOI 10.1074/JBC.M111.259630 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 16435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 873 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1207 ; 1.697 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 4.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;36.195 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 166 ;14.544 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 129 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 697 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 529 ; 1.418 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 2.024 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 344 ; 3.027 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 327 ; 4.179 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 873 ; 1.700 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 77 ; 6.591 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 843 ; 3.052 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5626 -9.8215 -2.1438 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.0612 REMARK 3 T33: 0.0758 T12: -0.0091 REMARK 3 T13: 0.0187 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.0916 L22: 9.5892 REMARK 3 L33: 3.0336 L12: 0.4330 REMARK 3 L13: -1.1005 L23: 2.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: -0.1036 S13: 0.1072 REMARK 3 S21: 0.1439 S22: -0.0954 S23: 0.0055 REMARK 3 S31: -0.1646 S32: 0.1376 S33: 0.0234 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3705 -19.2525 -6.9589 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0577 REMARK 3 T33: 0.0586 T12: 0.0102 REMARK 3 T13: 0.0025 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 6.6639 L22: 5.2076 REMARK 3 L33: 3.1244 L12: 1.7954 REMARK 3 L13: -1.4928 L23: 1.2763 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.1465 S13: 0.0230 REMARK 3 S21: -0.0687 S22: 0.0489 S23: 0.1869 REMARK 3 S31: 0.0508 S32: -0.0580 S33: -0.0280 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4333 -16.6996 -10.9963 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.1057 REMARK 3 T33: 0.1174 T12: -0.0180 REMARK 3 T13: -0.0007 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 4.2482 L22: 10.3815 REMARK 3 L33: 2.3570 L12: -5.6342 REMARK 3 L13: 0.9367 L23: -0.4955 REMARK 3 S TENSOR REMARK 3 S11: 0.1740 S12: 0.2319 S13: -0.2868 REMARK 3 S21: -0.3664 S22: -0.0007 S23: 0.2670 REMARK 3 S31: -0.0379 S32: 0.0302 S33: -0.1733 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9434 -12.6891 -1.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0587 REMARK 3 T33: 0.0825 T12: 0.0041 REMARK 3 T13: 0.0169 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.2031 L22: 0.9147 REMARK 3 L33: 3.6067 L12: -0.0237 REMARK 3 L13: 0.4076 L23: 0.3597 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0843 S13: -0.0371 REMARK 3 S21: -0.0080 S22: 0.1010 S23: 0.0511 REMARK 3 S31: 0.0466 S32: 0.1015 S33: -0.0648 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1736 -16.7869 3.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0826 REMARK 3 T33: 0.0647 T12: 0.0172 REMARK 3 T13: -0.0006 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.0391 L22: 9.8003 REMARK 3 L33: 1.6031 L12: -0.5687 REMARK 3 L13: 0.0555 L23: -0.6154 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.2599 S13: -0.0925 REMARK 3 S21: 0.1698 S22: 0.1130 S23: -0.2324 REMARK 3 S31: -0.0614 S32: -0.0503 S33: -0.0988 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5268 -24.8038 0.0779 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.0339 REMARK 3 T33: 0.1581 T12: 0.0079 REMARK 3 T13: 0.0115 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 10.5177 L22: 5.7217 REMARK 3 L33: 8.6464 L12: 0.8559 REMARK 3 L13: 5.6453 L23: 0.2027 REMARK 3 S TENSOR REMARK 3 S11: 0.1028 S12: -0.2046 S13: -0.7930 REMARK 3 S21: -0.1395 S22: -0.0722 S23: -0.3868 REMARK 3 S31: 0.4351 S32: 0.1649 S33: -0.0306 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7160 -17.2429 -8.5714 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1295 REMARK 3 T33: 0.0218 T12: 0.0385 REMARK 3 T13: 0.0033 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 7.7033 L22: 1.6550 REMARK 3 L33: 7.6598 L12: 0.4011 REMARK 3 L13: 2.0814 L23: -3.2970 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.0548 S13: 0.2665 REMARK 3 S21: 0.1891 S22: 0.2246 S23: 0.1355 REMARK 3 S31: -0.4132 S32: -0.5037 S33: -0.1861 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0787 -22.3364 -3.1311 REMARK 3 T TENSOR REMARK 3 T11: 0.0525 T22: 0.0406 REMARK 3 T33: 0.0390 T12: -0.0092 REMARK 3 T13: 0.0142 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 5.4191 L22: 6.7334 REMARK 3 L33: 3.1592 L12: -3.3838 REMARK 3 L13: 0.7358 L23: -1.3952 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0382 S13: -0.0301 REMARK 3 S21: -0.1083 S22: 0.1292 S23: -0.0372 REMARK 3 S31: -0.0019 S32: 0.0251 S33: -0.1347 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 31 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2174 -17.6592 -0.7467 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.1570 REMARK 3 T33: 0.0907 T12: 0.0154 REMARK 3 T13: -0.0239 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 2.2918 L22: 6.8541 REMARK 3 L33: 2.3371 L12: 2.0215 REMARK 3 L13: -1.5921 L23: 1.0923 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.2472 S13: 0.0961 REMARK 3 S21: 0.0604 S22: 0.0752 S23: -0.0051 REMARK 3 S31: 0.0488 S32: 0.2900 S33: -0.0833 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6423 -14.8478 -11.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0583 REMARK 3 T33: 0.1906 T12: -0.0206 REMARK 3 T13: -0.0198 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 5.0442 L22: 2.3459 REMARK 3 L33: 6.4823 L12: 1.9303 REMARK 3 L13: 2.9708 L23: 3.8771 REMARK 3 S TENSOR REMARK 3 S11: -0.2951 S12: 0.1101 S13: 0.6445 REMARK 3 S21: -0.1171 S22: 0.0857 S23: 0.0943 REMARK 3 S31: -0.1611 S32: 0.0831 S33: 0.2094 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0229 -23.4824 -11.7292 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0652 REMARK 3 T33: 0.0849 T12: -0.0155 REMARK 3 T13: 0.0113 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 10.1004 L22: 5.1657 REMARK 3 L33: 0.4354 L12: 0.4805 REMARK 3 L13: 1.2142 L23: 1.2073 REMARK 3 S TENSOR REMARK 3 S11: -0.1808 S12: 0.2492 S13: -0.2626 REMARK 3 S21: -0.2718 S22: 0.1543 S23: 0.0621 REMARK 3 S31: -0.0943 S32: 0.0620 S33: 0.0265 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6847 -25.7337 -8.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0475 REMARK 3 T33: 0.1272 T12: 0.0105 REMARK 3 T13: 0.0297 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 9.7024 L22: 7.6851 REMARK 3 L33: 8.3930 L12: 1.8050 REMARK 3 L13: 2.5238 L23: 1.5372 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: -0.1124 S13: -0.7286 REMARK 3 S21: 0.2344 S22: 0.0217 S23: -0.1935 REMARK 3 S31: 0.2411 S32: 0.0967 S33: 0.0862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000029921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-08; 25-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A; BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 0.97928, 0.97909, REMARK 200 0.96405, 0.98317 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : U REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 51.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRATE BUFFER PH5.0, 1.8M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.28000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.48350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.48350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.42000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.48350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.48350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 8.14000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.48350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.48350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.42000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.48350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.48350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 8.14000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 16.28000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 SER A 51 REMARK 465 LYS A 52 REMARK 465 HIS A 53 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 SER B 51 REMARK 465 LYS B 52 REMARK 465 HIS B 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 47.06 39.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 54 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RRU RELATED DB: PDB DBREF 3B0F A 6 53 UNP Q64337 SQSTM_MOUSE 391 438 DBREF 3B0F B 6 53 UNP Q64337 SQSTM_MOUSE 391 438 SEQADV 3B0F GLY A 1 UNP Q64337 EXPRESSION TAG SEQADV 3B0F PRO A 2 UNP Q64337 EXPRESSION TAG SEQADV 3B0F LEU A 3 UNP Q64337 EXPRESSION TAG SEQADV 3B0F GLY A 4 UNP Q64337 EXPRESSION TAG SEQADV 3B0F SER A 5 UNP Q64337 EXPRESSION TAG SEQADV 3B0F GLY B 1 UNP Q64337 EXPRESSION TAG SEQADV 3B0F PRO B 2 UNP Q64337 EXPRESSION TAG SEQADV 3B0F LEU B 3 UNP Q64337 EXPRESSION TAG SEQADV 3B0F GLY B 4 UNP Q64337 EXPRESSION TAG SEQADV 3B0F SER B 5 UNP Q64337 EXPRESSION TAG SEQRES 1 A 53 GLY PRO LEU GLY SER GLU ALA ASP PRO ARG LEU ILE GLU SEQRES 2 A 53 SER LEU SER GLN MET LEU SER MET GLY PHE SER ASP GLU SEQRES 3 A 53 GLY GLY TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR SEQRES 4 A 53 ASP ILE GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS SEQRES 5 A 53 HIS SEQRES 1 B 53 GLY PRO LEU GLY SER GLU ALA ASP PRO ARG LEU ILE GLU SEQRES 2 B 53 SER LEU SER GLN MET LEU SER MET GLY PHE SER ASP GLU SEQRES 3 B 53 GLY GLY TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR SEQRES 4 B 53 ASP ILE GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS SEQRES 5 B 53 HIS HET SO4 A 54 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *77(H2 O) HELIX 1 1 ASP A 8 MET A 21 1 14 HELIX 2 2 ASP A 25 GLY A 27 5 3 HELIX 3 3 GLY A 28 LYS A 37 1 10 HELIX 4 4 ASP A 40 ILE A 48 1 9 HELIX 5 5 ASP B 8 MET B 21 1 14 HELIX 6 6 ASP B 25 GLY B 27 5 3 HELIX 7 7 GLY B 28 LYS B 37 1 10 HELIX 8 8 ASP B 40 ILE B 48 1 9 SITE 1 AC1 6 ARG A 32 THR A 36 HOH A 71 HOH A 74 SITE 2 AC1 6 GLY B 27 ARG B 32 CRYST1 72.967 72.967 32.560 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030713 0.00000