HEADER TRANSFERASE 17-JUN-11 3B0X TITLE K263A MUTANT OF POLX FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH CA- TITLE 2 DGTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA FAMILY (X FAMILY); COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: POLX, TTHA1150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2/PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, POLXC, PHP, DNA POLYMERASE, DRP LYASE, 3'-5' EXONUCLEASE, AP KEYWDS 3 ENDONUCLEASE, DNA REPAIR, NUCLEOTIDE, DNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKANE,N.NAKAGAWA,R.MASUI,S.KURAMITSU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 01-NOV-23 3B0X 1 REMARK SEQADV LINK REVDAT 2 20-JUN-12 3B0X 1 COMPND REVDAT 1 02-MAY-12 3B0X 0 JRNL AUTH S.NAKANE,H.ISHIKAWA,N.NAKAGAWA,S.KURAMITSU,R.MASUI JRNL TITL THE STRUCTURAL BASIS OF THE KINETIC MECHANISM OF A JRNL TITL 2 GAP-FILLING X-FAMILY DNA POLYMERASE THAT BINDS MG(2+)-DNTP JRNL TITL 3 BEFORE BINDING TO DNA. JRNL REF J.MOL.BIOL. V. 417 179 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22306405 JRNL DOI 10.1016/J.JMB.2012.01.025 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 125120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6281 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8720 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 457 REMARK 3 BIN FREE R VALUE : 0.1900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 551 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.445 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4662 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6319 ; 1.380 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 5.661 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;29.832 ;22.850 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 820 ;12.763 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;16.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3543 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2868 ; 1.179 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4587 ; 1.876 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1794 ; 2.593 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1728 ; 3.946 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4662 ; 1.330 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 558 ; 5.963 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4567 ; 3.767 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3B0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000029939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125330 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6420 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : 0.25800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.009 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CHLORIDE, 0.01M CALCIUM REMARK 280 CHLORIDE, 0.005M SODIUM CACODYLATE (PH 6.0), 10% POLYETHYLENE REMARK 280 GLYCOL 4000 (V/V), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.60100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 349 ZN ZN A 576 1.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 89 171.09 -54.73 REMARK 500 VAL A 101 -83.17 -94.54 REMARK 500 ARG A 132 41.49 -90.49 REMARK 500 CYS A 186 -139.45 -112.33 REMARK 500 SER A 348 -109.39 -136.57 REMARK 500 HIS A 468 73.08 17.77 REMARK 500 ARG A 476 -37.38 -134.13 REMARK 500 ARG A 506 -64.92 -106.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 581 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 56 O REMARK 620 2 LEU A 58 O 89.2 REMARK 620 3 VAL A 61 O 77.6 91.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 580 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 175 O REMARK 620 2 LEU A 177 O 95.3 REMARK 620 3 VAL A 180 O 96.5 90.2 REMARK 620 4 HOH A 791 O 106.2 81.9 156.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 578 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD1 REMARK 620 2 ASP A 198 O 71.9 REMARK 620 3 ASP A 200 OD2 90.2 93.6 REMARK 620 4 DGT A 583 O1G 97.8 103.2 163.0 REMARK 620 5 DGT A 583 O2B 150.9 137.1 86.2 79.5 REMARK 620 6 DGT A 583 O1A 73.4 145.3 84.4 83.5 77.5 REMARK 620 7 HOH A 675 O 135.8 64.0 88.9 95.6 73.1 150.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 579 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD2 REMARK 620 2 ASP A 198 OD1 51.3 REMARK 620 3 ASP A 200 OD1 119.6 85.9 REMARK 620 4 ASP A 243 OD2 76.1 114.1 89.7 REMARK 620 5 DGT A 583 O1A 111.1 70.5 84.5 172.4 REMARK 620 6 HOH A 704 O 145.7 160.8 87.4 83.8 91.0 REMARK 620 7 HOH A 726 O 76.9 101.1 162.0 102.3 82.3 80.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 576 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 374 NE2 REMARK 620 2 HIS A 531 NE2 132.6 REMARK 620 3 HOH A 872 O 77.6 82.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 577 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 413 OE2 REMARK 620 2 HIS A 468 NE2 96.3 REMARK 620 3 HOH A 639 O 104.4 92.1 REMARK 620 4 HOH A1051 O 149.6 112.0 86.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 577 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 578 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 583 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AU2 RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 3B0Y RELATED DB: PDB REMARK 900 RELATED ID: TTK003000748.1 RELATED DB: TARGETDB DBREF 3B0X A 1 575 UNP Q5SJ64 Q5SJ64_THET8 1 575 SEQADV 3B0X ALA A 263 UNP Q5SJ64 LYS 263 ENGINEERED MUTATION SEQRES 1 A 575 MET ARG ASN GLN GLU LEU ALA ARG ILE PHE GLU GLU ILE SEQRES 2 A 575 GLY LEU MET SER GLU PHE LEU GLY ASP ASN PRO PHE ARG SEQRES 3 A 575 VAL ARG ALA TYR HIS GLN ALA ALA ARG THR LEU TYR ASP SEQRES 4 A 575 LEU ASP THR PRO ILE GLU GLU ILE ALA GLU LYS GLY LYS SEQRES 5 A 575 GLU ALA LEU MET GLU LEU PRO GLY VAL GLY PRO ASP LEU SEQRES 6 A 575 ALA GLU LYS ILE LEU GLU PHE LEU ARG THR GLY LYS VAL SEQRES 7 A 575 ARG LYS HIS GLU GLU LEU SER ARG LYS VAL PRO ARG GLY SEQRES 8 A 575 VAL LEU GLU VAL MET GLU VAL PRO GLY VAL GLY PRO LYS SEQRES 9 A 575 THR ALA ARG LEU LEU TYR GLU GLY LEU GLY ILE ASP SER SEQRES 10 A 575 LEU GLU LYS LEU LYS ALA ALA LEU ASP ARG GLY ASP LEU SEQRES 11 A 575 THR ARG LEU LYS GLY PHE GLY PRO LYS ARG ALA GLU ARG SEQRES 12 A 575 ILE ARG GLU GLY LEU ALA LEU ALA GLN ALA ALA GLY LYS SEQRES 13 A 575 ARG ARG PRO LEU GLY ALA VAL LEU SER LEU ALA ARG SER SEQRES 14 A 575 LEU LEU GLU ALA ILE ARG ALA LEU PRO GLY VAL GLU ARG SEQRES 15 A 575 ALA GLU LEU CYS GLY SER ALA ARG ARG TYR LYS ASP THR SEQRES 16 A 575 VAL GLY ASP LEU ASP PHE LEU VAL ALA SER ARG GLU GLY SEQRES 17 A 575 GLU ARG ALA VAL GLU GLY PHE VAL ARG LEU PRO GLN VAL SEQRES 18 A 575 LYS GLU VAL TYR ALA LYS GLY LYS GLU ARG ALA THR VAL SEQRES 19 A 575 PHE LEU LYS ASN GLY LEU GLN VAL ASP LEU ARG VAL VAL SEQRES 20 A 575 PRO PRO GLU SER TYR GLY ALA GLY LEU GLN TYR LEU THR SEQRES 21 A 575 GLY SER ALA ALA HIS SER ILE ARG LEU ARG ALA LEU ALA SEQRES 22 A 575 GLN GLU LYS GLY LEU LYS LEU SER GLU TYR GLY VAL PHE SEQRES 23 A 575 ARG GLY GLU LYS ARG ILE ALA GLY GLU THR GLU GLU GLU SEQRES 24 A 575 VAL TYR ALA ALA LEU GLY LEU PRO TRP ILE PRO PRO PRO SEQRES 25 A 575 LEU ARG GLU ASP GLN GLY GLU VAL GLU ALA ALA LEU GLU SEQRES 26 A 575 GLY ARG LEU PRO LYS LEU LEU GLU LEU PRO GLN VAL LYS SEQRES 27 A 575 GLY ASP LEU GLN VAL HIS SER THR TYR SER ASP GLY GLN SEQRES 28 A 575 ASN THR LEU GLU GLU LEU TRP GLU ALA ALA LYS THR MET SEQRES 29 A 575 GLY TYR ARG TYR LEU ALA VAL THR ASP HIS SER PRO ALA SEQRES 30 A 575 VAL ARG VAL ALA GLY GLY PRO SER PRO GLU GLU ALA LEU SEQRES 31 A 575 LYS ARG VAL GLY GLU ILE ARG ARG PHE ASN GLU THR HIS SEQRES 32 A 575 GLY PRO PRO TYR LEU LEU ALA GLY ALA GLU VAL ASP ILE SEQRES 33 A 575 HIS PRO ASP GLY THR LEU ASP TYR PRO ASP TRP VAL LEU SEQRES 34 A 575 ARG GLU LEU ASP LEU VAL LEU VAL SER VAL HIS SER ARG SEQRES 35 A 575 PHE ASN LEU PRO LYS ALA ASP GLN THR LYS ARG LEU LEU SEQRES 36 A 575 LYS ALA LEU GLU ASN PRO PHE VAL HIS VAL LEU ALA HIS SEQRES 37 A 575 PRO THR ALA ARG LEU LEU GLY ARG ARG ALA PRO ILE GLU SEQRES 38 A 575 ALA ASP TRP GLU ALA VAL PHE GLN LYS ALA LYS GLU LYS SEQRES 39 A 575 GLY VAL ALA VAL GLU ILE ASP GLY TYR TYR ASP ARG MET SEQRES 40 A 575 ASP LEU PRO ASP ASP LEU ALA ARG MET ALA TYR GLY MET SEQRES 41 A 575 GLY LEU TRP ILE SER LEU SER THR ASP ALA HIS GLN THR SEQRES 42 A 575 ASP HIS LEU ARG PHE MET GLU LEU ALA VAL GLY THR ALA SEQRES 43 A 575 GLN ARG ALA TRP ILE GLY PRO GLU ARG VAL LEU ASN THR SEQRES 44 A 575 LEU ASP TYR GLU ASP LEU LEU SER TRP LEU LYS ALA ARG SEQRES 45 A 575 ARG GLY VAL HET ZN A 576 1 HET ZN A 577 1 HET CA A 578 1 HET CA A 579 1 HET CA A 580 1 HET CA A 581 1 HET CL A 582 1 HET DGT A 583 31 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 4(CA 2+) FORMUL 8 CL CL 1- FORMUL 9 DGT C10 H16 N5 O13 P3 FORMUL 10 HOH *551(H2 O) HELIX 1 1 ARG A 2 LEU A 20 1 19 HELIX 2 2 ASN A 23 LEU A 40 1 18 HELIX 3 3 PRO A 43 GLU A 49 1 7 HELIX 4 4 GLY A 51 GLU A 57 1 7 HELIX 5 5 GLY A 62 GLY A 76 1 15 HELIX 6 6 VAL A 78 VAL A 88 1 11 HELIX 7 7 PRO A 89 GLU A 97 1 9 HELIX 8 8 GLY A 102 GLY A 112 1 11 HELIX 9 9 SER A 117 GLY A 128 1 12 HELIX 10 10 ASP A 129 LEU A 133 5 5 HELIX 11 11 GLY A 137 GLY A 155 1 19 HELIX 12 12 LEU A 160 ALA A 176 1 17 HELIX 13 13 CYS A 186 ARG A 191 1 6 HELIX 14 14 GLU A 207 ARG A 217 1 11 HELIX 15 15 PRO A 248 GLU A 250 5 3 HELIX 16 16 SER A 251 GLY A 261 1 11 HELIX 17 17 SER A 262 LYS A 276 1 15 HELIX 18 18 THR A 296 LEU A 304 1 9 HELIX 19 19 PRO A 310 ARG A 314 5 5 HELIX 20 20 GLY A 318 GLU A 325 1 8 HELIX 21 21 GLU A 333 VAL A 337 5 5 HELIX 22 22 THR A 353 MET A 364 1 12 HELIX 23 23 SER A 385 GLY A 404 1 20 HELIX 24 24 PRO A 425 ARG A 430 1 6 HELIX 25 25 PRO A 446 LEU A 458 1 13 HELIX 26 26 ASP A 483 GLY A 495 1 13 HELIX 27 27 PRO A 510 MET A 520 1 11 HELIX 28 28 GLN A 532 ARG A 537 5 6 HELIX 29 29 PHE A 538 ALA A 549 1 12 HELIX 30 30 VAL A 556 LEU A 560 5 5 HELIX 31 31 ASP A 561 ALA A 571 1 11 SHEET 1 A 2 ARG A 158 PRO A 159 0 SHEET 2 A 2 THR A 195 VAL A 196 -1 O VAL A 196 N ARG A 158 SHEET 1 B 5 ARG A 182 LEU A 185 0 SHEET 2 B 5 LEU A 199 ALA A 204 -1 O ALA A 204 N ARG A 182 SHEET 3 B 5 GLN A 241 VAL A 247 1 O ASP A 243 N LEU A 199 SHEET 4 B 5 ARG A 231 LEU A 236 -1 N ALA A 232 O LEU A 244 SHEET 5 B 5 VAL A 221 LYS A 227 -1 N GLU A 223 O PHE A 235 SHEET 1 C 3 LYS A 279 SER A 281 0 SHEET 2 C 3 GLY A 284 ARG A 287 -1 O GLY A 284 N SER A 281 SHEET 3 C 3 LYS A 290 ALA A 293 -1 O ILE A 292 N VAL A 285 SHEET 1 D 7 GLY A 339 VAL A 343 0 SHEET 2 D 7 TYR A 368 HIS A 374 1 O THR A 372 N VAL A 343 SHEET 3 D 7 TYR A 407 ASP A 415 1 O LEU A 409 N LEU A 369 SHEET 4 D 7 LEU A 434 SER A 438 1 O LEU A 436 N VAL A 414 SHEET 5 D 7 VAL A 465 LEU A 466 1 O VAL A 465 N VAL A 437 SHEET 6 D 7 ALA A 497 ASP A 501 1 O ALA A 497 N LEU A 466 SHEET 7 D 7 ILE A 524 SER A 527 1 O SER A 525 N ILE A 500 LINK O MET A 56 CA CA A 581 1555 1555 2.45 LINK O LEU A 58 CA CA A 581 1555 1555 2.73 LINK O VAL A 61 CA CA A 581 1555 1555 2.92 LINK O ARG A 175 CA CA A 580 1555 1555 2.67 LINK O LEU A 177 CA CA A 580 1555 1555 2.66 LINK O VAL A 180 CA CA A 580 1555 1555 2.74 LINK OD1 ASP A 198 CA CA A 578 1555 1555 2.40 LINK O ASP A 198 CA CA A 578 1555 1555 2.44 LINK OD2 ASP A 198 CA CA A 579 1555 1555 2.50 LINK OD1 ASP A 198 CA CA A 579 1555 1555 2.51 LINK OD2 ASP A 200 CA CA A 578 1555 1555 2.28 LINK OD1 ASP A 200 CA CA A 579 1555 1555 2.37 LINK OD2 ASP A 243 CA CA A 579 1555 1555 2.37 LINK NE2 HIS A 374 ZN ZN A 576 1555 1555 2.30 LINK OE2 GLU A 413 ZN ZN A 577 1555 1555 1.75 LINK NE2 HIS A 468 ZN ZN A 577 1555 1555 2.08 LINK NE2 HIS A 531 ZN ZN A 576 1555 1555 2.44 LINK ZN ZN A 576 O HOH A 872 1555 1555 2.03 LINK ZN ZN A 577 O HOH A 639 1555 1555 2.22 LINK ZN ZN A 577 O HOH A1051 1555 1555 1.95 LINK CA CA A 578 O1G DGT A 583 1555 1555 2.31 LINK CA CA A 578 O2B DGT A 583 1555 1555 2.39 LINK CA CA A 578 O1A DGT A 583 1555 1555 2.43 LINK CA CA A 578 O HOH A 675 1555 1555 2.54 LINK CA CA A 579 O1A DGT A 583 1555 1555 2.49 LINK CA CA A 579 O HOH A 704 1555 1555 2.36 LINK CA CA A 579 O HOH A 726 1555 1555 2.33 LINK CA CA A 580 O HOH A 791 1555 1555 2.78 CISPEP 1 GLY A 261 SER A 262 0 -4.52 CISPEP 2 GLY A 383 PRO A 384 0 1.01 CISPEP 3 PRO A 405 PRO A 406 0 1.44 CISPEP 4 ASP A 508 LEU A 509 0 9.81 SITE 1 AC1 4 ASP A 349 HIS A 374 HIS A 531 HOH A 872 SITE 1 AC2 5 GLU A 413 HIS A 440 HIS A 468 HOH A 639 SITE 2 AC2 5 HOH A1051 SITE 1 AC3 4 ASP A 198 ASP A 200 DGT A 583 HOH A 675 SITE 1 AC4 6 ASP A 198 ASP A 200 ASP A 243 DGT A 583 SITE 2 AC4 6 HOH A 704 HOH A 726 SITE 1 AC5 4 ARG A 175 LEU A 177 VAL A 180 HOH A 791 SITE 1 AC6 3 MET A 56 LEU A 58 VAL A 61 SITE 1 AC7 3 ARG A 182 THR A 296 GLU A 297 SITE 1 AC8 25 ARG A 157 GLY A 187 SER A 188 ARG A 191 SITE 2 AC8 25 VAL A 196 GLY A 197 ASP A 198 ASP A 200 SITE 3 AC8 25 TYR A 258 LEU A 259 THR A 260 GLY A 261 SITE 4 AC8 25 ARG A 270 CA A 578 CA A 579 HOH A 617 SITE 5 AC8 25 HOH A 641 HOH A 675 HOH A 726 HOH A 773 SITE 6 AC8 25 HOH A 965 HOH A1032 HOH A1079 HOH A1120 SITE 7 AC8 25 HOH A1134 CRYST1 69.088 53.202 84.859 90.00 107.65 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014474 0.000000 0.004604 0.00000 SCALE2 0.000000 0.018796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012366 0.00000