HEADER TRANSFERASE 05-JUL-11 3B1N TITLE STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN TITLE 2 COMPLEX WITH ADP-MIZORIBINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOSIDE KINASE; COMPND 5 EC: 2.7.1.143; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264; SOURCE 5 GENE: BTH_I1158; SOURCE 6 EXPRESSION_SYSTEM: RHODOCOCCUS ERYTHROPOLIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1833; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: L88; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTIP-QC2 KEYWDS ROSSMANN FOLD, KINASE, ATP BINDING, MG BINDING, NUCLEOSIDE BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YASUTAKE,H.OTA,E.HINO,S.SAKASEGAWA,T.TAMURA REVDAT 4 13-MAR-24 3B1N 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 3B1N 1 REMARK REVDAT 2 18-APR-12 3B1N 1 JRNL REVDAT 1 02-NOV-11 3B1N 0 JRNL AUTH Y.YASUTAKE,H.OTA,E.HINO,S.SAKASEGAWA,T.TAMURA JRNL TITL STRUCTURES OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE: JRNL TITL 2 IMPLICATIONS FOR THE CATALYTIC MECHANISM AND NUCLEOSIDE JRNL TITL 3 SELECTIVITY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 945 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 22101821 JRNL DOI 10.1107/S0907444911038777 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 92736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4856 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 343 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 705 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5162 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7040 ; 1.901 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 669 ; 5.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;28.695 ;23.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;14.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;17.242 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3989 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3177 ; 1.122 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5095 ; 1.941 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1985 ; 2.976 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1926 ; 4.747 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000029965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, SHELX, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE, 13% PEG 3350, PH 5.1, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.29150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.32700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.29150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.32700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.29150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.32700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.29150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.32700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 LYS A 315 REMARK 465 LEU A 316 REMARK 465 ARG A 317 REMARK 465 SER A 318 REMARK 465 LEU A 319 REMARK 465 GLU A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 MET B 1 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 166 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP B 166 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 293 59.79 -148.47 REMARK 500 ASP B 144 -179.97 -172.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 183 O REMARK 620 2 GLU A 184 O 85.7 REMARK 620 3 ALA A 186 O 95.9 112.0 REMARK 620 4 ARG A 213 O 96.3 125.3 122.0 REMARK 620 5 HOH A 392 O 171.3 85.9 89.5 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 183 O REMARK 620 2 GLU B 184 O 84.8 REMARK 620 3 ALA B 186 O 99.7 115.2 REMARK 620 4 ARG B 213 O 98.5 121.6 121.4 REMARK 620 5 HOH B 552 O 170.4 85.8 85.9 85.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MZR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MZR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 327 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B1O RELATED DB: PDB REMARK 900 RELATED ID: 3B1P RELATED DB: PDB REMARK 900 RELATED ID: 3B1Q RELATED DB: PDB REMARK 900 RELATED ID: 3B1R RELATED DB: PDB DBREF 3B1N A 1 312 UNP Q2SZE4 Q2SZE4_BURTA 1 312 DBREF 3B1N B 1 312 UNP Q2SZE4 Q2SZE4_BURTA 1 312 SEQADV 3B1N GLY A 313 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N SER A 314 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N LYS A 315 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N LEU A 316 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N ARG A 317 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N SER A 318 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N LEU A 319 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N GLU A 320 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS A 321 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS A 322 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS A 323 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS A 324 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS A 325 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS A 326 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N GLY B 313 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N SER B 314 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N LYS B 315 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N LEU B 316 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N ARG B 317 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N SER B 318 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N LEU B 319 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N GLU B 320 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS B 321 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS B 322 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS B 323 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS B 324 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS B 325 UNP Q2SZE4 EXPRESSION TAG SEQADV 3B1N HIS B 326 UNP Q2SZE4 EXPRESSION TAG SEQRES 1 A 326 MET ALA THR LEU ILE CYS GLY SER ILE ALA TYR ASP ASN SEQRES 2 A 326 ILE MET THR PHE GLU GLY ARG PHE ARG GLU HIS ILE LEU SEQRES 3 A 326 PRO ASP GLN VAL HIS LEU ILE ASN LEU SER PHE LEU VAL SEQRES 4 A 326 PRO THR MET ARG ARG GLU PHE GLY GLY CYS ALA GLY ASN SEQRES 5 A 326 ILE ALA TYR ALA LEU ASN LEU LEU GLY GLY ASP ALA ARG SEQRES 6 A 326 MET MET GLY THR LEU GLY ALA VAL ASP ALA GLN PRO TYR SEQRES 7 A 326 LEU ASP ARG MET ASP ALA LEU GLY LEU SER ARG GLU TYR SEQRES 8 A 326 VAL ARG VAL LEU PRO ASP THR TYR SER ALA GLN ALA MET SEQRES 9 A 326 ILE THR THR ASP LEU ASP ASN ASN GLN ILE THR ALA PHE SEQRES 10 A 326 HIS PRO GLY ALA MET MET GLN SER HIS VAL ASN HIS ALA SEQRES 11 A 326 GLY GLU ALA LYS ASP ILE LYS LEU ALA ILE VAL GLY PRO SEQRES 12 A 326 ASP GLY PHE GLN GLY MET VAL GLN HIS THR GLU GLU LEU SEQRES 13 A 326 ALA GLN ALA GLY VAL PRO PHE ILE PHE ASP PRO GLY GLN SEQRES 14 A 326 GLY LEU PRO LEU PHE ASP GLY ALA THR LEU ARG ARG SER SEQRES 15 A 326 ILE GLU LEU ALA THR TYR ILE ALA VAL ASN ASP TYR GLU SEQRES 16 A 326 ALA LYS LEU VAL CYS ASP LYS THR GLY TRP SER GLU ASP SEQRES 17 A 326 GLU ILE ALA SER ARG VAL GLN ALA LEU ILE ILE THR ARG SEQRES 18 A 326 GLY GLU HIS GLY ALA THR ILE ARG HIS ARG ASP GLY THR SEQRES 19 A 326 GLU GLN ILE PRO ALA VAL ARG ALA GLU ARG VAL ILE ASP SEQRES 20 A 326 PRO THR GLY CYS GLY ASP ALA PHE ARG GLY GLY LEU LEU SEQRES 21 A 326 TYR GLY ILE GLU HIS GLY PHE ASP TRP ALA THR ALA GLY SEQRES 22 A 326 ARG LEU ALA SER LEU MET GLY ALA LEU LYS ILE ALA HIS SEQRES 23 A 326 GLN GLY PRO GLN THR TYR ALA PRO THR ARG ALA GLU ILE SEQRES 24 A 326 ASP ALA ARG PHE GLU THR ALA PHE GLY TYR ARG PRO LYS SEQRES 25 A 326 GLY SER LYS LEU ARG SER LEU GLU HIS HIS HIS HIS HIS SEQRES 26 A 326 HIS SEQRES 1 B 326 MET ALA THR LEU ILE CYS GLY SER ILE ALA TYR ASP ASN SEQRES 2 B 326 ILE MET THR PHE GLU GLY ARG PHE ARG GLU HIS ILE LEU SEQRES 3 B 326 PRO ASP GLN VAL HIS LEU ILE ASN LEU SER PHE LEU VAL SEQRES 4 B 326 PRO THR MET ARG ARG GLU PHE GLY GLY CYS ALA GLY ASN SEQRES 5 B 326 ILE ALA TYR ALA LEU ASN LEU LEU GLY GLY ASP ALA ARG SEQRES 6 B 326 MET MET GLY THR LEU GLY ALA VAL ASP ALA GLN PRO TYR SEQRES 7 B 326 LEU ASP ARG MET ASP ALA LEU GLY LEU SER ARG GLU TYR SEQRES 8 B 326 VAL ARG VAL LEU PRO ASP THR TYR SER ALA GLN ALA MET SEQRES 9 B 326 ILE THR THR ASP LEU ASP ASN ASN GLN ILE THR ALA PHE SEQRES 10 B 326 HIS PRO GLY ALA MET MET GLN SER HIS VAL ASN HIS ALA SEQRES 11 B 326 GLY GLU ALA LYS ASP ILE LYS LEU ALA ILE VAL GLY PRO SEQRES 12 B 326 ASP GLY PHE GLN GLY MET VAL GLN HIS THR GLU GLU LEU SEQRES 13 B 326 ALA GLN ALA GLY VAL PRO PHE ILE PHE ASP PRO GLY GLN SEQRES 14 B 326 GLY LEU PRO LEU PHE ASP GLY ALA THR LEU ARG ARG SER SEQRES 15 B 326 ILE GLU LEU ALA THR TYR ILE ALA VAL ASN ASP TYR GLU SEQRES 16 B 326 ALA LYS LEU VAL CYS ASP LYS THR GLY TRP SER GLU ASP SEQRES 17 B 326 GLU ILE ALA SER ARG VAL GLN ALA LEU ILE ILE THR ARG SEQRES 18 B 326 GLY GLU HIS GLY ALA THR ILE ARG HIS ARG ASP GLY THR SEQRES 19 B 326 GLU GLN ILE PRO ALA VAL ARG ALA GLU ARG VAL ILE ASP SEQRES 20 B 326 PRO THR GLY CYS GLY ASP ALA PHE ARG GLY GLY LEU LEU SEQRES 21 B 326 TYR GLY ILE GLU HIS GLY PHE ASP TRP ALA THR ALA GLY SEQRES 22 B 326 ARG LEU ALA SER LEU MET GLY ALA LEU LYS ILE ALA HIS SEQRES 23 B 326 GLN GLY PRO GLN THR TYR ALA PRO THR ARG ALA GLU ILE SEQRES 24 B 326 ASP ALA ARG PHE GLU THR ALA PHE GLY TYR ARG PRO LYS SEQRES 25 B 326 GLY SER LYS LEU ARG SER LEU GLU HIS HIS HIS HIS HIS SEQRES 26 B 326 HIS HET MZR A 401 18 HET ADP A 402 27 HET NA A 403 1 HET MZR B 401 18 HET ADP B 402 27 HET NA B 403 1 HET GOL B 327 6 HETNAM MZR 5-HYDROXY-1-(BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4- HETNAM 2 MZR CARBOXAMIDE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN MZR MIZORIBINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MZR 2(C9 H13 N3 O6) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 NA 2(NA 1+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *705(H2 O) HELIX 1 1 ARG A 20 ILE A 25 5 6 HELIX 2 2 GLY A 48 LEU A 60 1 13 HELIX 3 3 ALA A 75 GLY A 86 1 12 HELIX 4 4 PRO A 119 ASN A 128 5 10 HELIX 5 5 HIS A 129 ALA A 133 5 5 HELIX 6 6 GLY A 145 GLY A 160 1 16 HELIX 7 7 PRO A 167 PHE A 174 5 8 HELIX 8 8 ASP A 175 ALA A 186 1 12 HELIX 9 9 ASP A 193 GLY A 204 1 12 HELIX 10 10 SER A 206 SER A 212 1 7 HELIX 11 11 GLY A 222 HIS A 224 5 3 HELIX 12 12 GLY A 250 HIS A 265 1 16 HELIX 13 13 ASP A 268 ALA A 285 1 18 HELIX 14 14 THR A 295 GLY A 308 1 14 HELIX 15 15 ARG B 20 HIS B 24 5 5 HELIX 16 16 GLY B 48 LEU B 60 1 13 HELIX 17 17 ALA B 75 GLY B 86 1 12 HELIX 18 18 PRO B 119 ASN B 128 5 10 HELIX 19 19 HIS B 129 ALA B 133 5 5 HELIX 20 20 GLY B 145 ALA B 159 1 15 HELIX 21 21 PRO B 167 PHE B 174 5 8 HELIX 22 22 ASP B 175 ALA B 186 1 12 HELIX 23 23 ASP B 193 GLY B 204 1 12 HELIX 24 24 SER B 206 SER B 212 1 7 HELIX 25 25 GLY B 222 HIS B 224 5 3 HELIX 26 26 GLY B 250 HIS B 265 1 16 HELIX 27 27 ASP B 268 ALA B 285 1 18 HELIX 28 28 THR B 295 GLY B 308 1 14 SHEET 1 A 9 SER A 88 LEU A 95 0 SHEET 2 A 9 ALA A 64 GLY A 71 1 N LEU A 70 O LEU A 95 SHEET 3 A 9 THR A 3 CYS A 6 1 N THR A 3 O ARG A 65 SHEET 4 A 9 LEU A 138 VAL A 141 1 O ILE A 140 N CYS A 6 SHEET 5 A 9 PHE A 163 PHE A 165 1 O ILE A 164 N VAL A 141 SHEET 6 A 9 TYR A 188 ASN A 192 1 O TYR A 188 N PHE A 165 SHEET 7 A 9 ALA A 216 THR A 220 1 O ILE A 218 N ILE A 189 SHEET 8 A 9 ALA A 226 HIS A 230 -1 O ARG A 229 N LEU A 217 SHEET 9 A 9 GLY A 233 ILE A 237 -1 O ILE A 237 N ALA A 226 SHEET 1 B 5 GLU A 45 GLY A 47 0 SHEET 2 B 5 ALA A 10 THR A 16 -1 N ASP A 12 O GLU A 45 SHEET 3 B 5 ALA A 101 THR A 107 1 O ILE A 105 N MET A 15 SHEET 4 B 5 ILE A 114 HIS A 118 -1 O HIS A 118 N GLN A 102 SHEET 5 B 5 LEU B 35 LEU B 38 1 O PHE B 37 N PHE A 117 SHEET 1 C 5 ASN A 34 LEU A 38 0 SHEET 2 C 5 GLN B 113 HIS B 118 1 O THR B 115 N LEU A 35 SHEET 3 C 5 ALA B 101 THR B 107 -1 N GLN B 102 O HIS B 118 SHEET 4 C 5 ALA B 10 THR B 16 1 N MET B 15 O ILE B 105 SHEET 5 C 5 GLU B 45 GLY B 47 -1 O GLU B 45 N ASP B 12 SHEET 1 D 9 SER B 88 LEU B 95 0 SHEET 2 D 9 ALA B 64 GLY B 71 1 N LEU B 70 O LEU B 95 SHEET 3 D 9 THR B 3 CYS B 6 1 N THR B 3 O ARG B 65 SHEET 4 D 9 LEU B 138 VAL B 141 1 O ILE B 140 N CYS B 6 SHEET 5 D 9 PHE B 163 PHE B 165 1 O ILE B 164 N VAL B 141 SHEET 6 D 9 TYR B 188 ASN B 192 1 O TYR B 188 N PHE B 165 SHEET 7 D 9 ALA B 216 THR B 220 1 O ILE B 218 N ILE B 189 SHEET 8 D 9 ALA B 226 HIS B 230 -1 O ARG B 229 N LEU B 217 SHEET 9 D 9 GLY B 233 ILE B 237 -1 O ILE B 237 N ALA B 226 LINK O ILE A 183 NA NA A 403 1555 1555 2.38 LINK O GLU A 184 NA NA A 403 1555 1555 2.38 LINK O ALA A 186 NA NA A 403 1555 1555 2.27 LINK O ARG A 213 NA NA A 403 1555 1555 2.28 LINK O HOH A 392 NA NA A 403 1555 1555 2.39 LINK O ILE B 183 NA NA B 403 1555 1555 2.44 LINK O GLU B 184 NA NA B 403 1555 1555 2.37 LINK O ALA B 186 NA NA B 403 1555 1555 2.30 LINK O ARG B 213 NA NA B 403 1555 1555 2.22 LINK NA NA B 403 O HOH B 552 1555 1555 2.47 SITE 1 AC1 14 SER A 8 ALA A 10 ASP A 12 GLY A 47 SITE 2 AC1 14 GLY A 48 CYS A 49 ASN A 52 PHE A 117 SITE 3 AC1 14 GLN A 169 ASP A 253 HOH A 415 HOH A 435 SITE 4 AC1 14 HOH A 617 SER B 36 SITE 1 AC2 24 ASN A 111 ASN A 192 THR A 220 ARG A 221 SITE 2 AC2 24 GLY A 222 GLU A 223 GLY A 225 VAL A 240 SITE 3 AC2 24 CYS A 251 GLY A 252 SER A 277 GLY A 280 SITE 4 AC2 24 ILE A 284 HOH A 327 HOH A 349 HOH A 353 SITE 5 AC2 24 HOH A 366 HOH A 380 HOH A 415 HOH A 424 SITE 6 AC2 24 HOH A 446 HOH A 482 HOH A 494 HIS B 31 SITE 1 AC3 5 ILE A 183 GLU A 184 ALA A 186 ARG A 213 SITE 2 AC3 5 HOH A 392 SITE 1 AC4 13 SER A 36 SER B 8 ALA B 10 ASP B 12 SITE 2 AC4 13 GLY B 47 GLY B 48 CYS B 49 ASN B 52 SITE 3 AC4 13 PHE B 117 GLN B 169 ASP B 253 HOH B 440 SITE 4 AC4 13 HOH B 483 SITE 1 AC5 24 HIS A 31 ASN B 111 ASN B 192 THR B 220 SITE 2 AC5 24 ARG B 221 GLY B 222 GLU B 223 GLY B 225 SITE 3 AC5 24 VAL B 240 CYS B 251 GLY B 252 SER B 277 SITE 4 AC5 24 GLY B 280 ILE B 284 HOH B 349 HOH B 352 SITE 5 AC5 24 HOH B 361 HOH B 390 HOH B 442 HOH B 448 SITE 6 AC5 24 HOH B 459 HOH B 469 HOH B 553 HOH B 564 SITE 1 AC6 6 ILE B 183 GLU B 184 ALA B 186 ARG B 213 SITE 2 AC6 6 VAL B 214 HOH B 552 SITE 1 AC7 6 ARG B 20 ARG B 22 GLN B 124 HIS B 126 SITE 2 AC7 6 HOH B 378 HOH B 394 CRYST1 44.583 164.654 182.540 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005478 0.00000