data_3B21 # _entry.id 3B21 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B21 RCSB RCSB029979 WWPDB D_1000029979 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B21 _pdbx_database_status.recvd_initial_deposition_date 2011-07-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sanada, T.' 1 'Kim, M.' 2 'Sasakawa, C.' 3 'Mizushima, T.' 4 # _citation.id primary _citation.title 'The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response' _citation.journal_abbrev Nature _citation.journal_volume 483 _citation.page_first 623 _citation.page_last 626 _citation.year 2012 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22407319 _citation.pdbx_database_id_DOI 10.1038/nature10894 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sanada, T.' 1 primary 'Kim, M.' 2 primary 'Mimuro, H.' 3 primary 'Suzuki, M.' 4 primary 'Ogawa, M.' 5 primary 'Oyama, A.' 6 primary 'Ashida, H.' 7 primary 'Kobayashi, T.' 8 primary 'Koyama, T.' 9 primary 'Nagai, S.' 10 primary 'Shibata, Y.' 11 primary 'Gohda, J.' 12 primary 'Inoue, J.I.' 13 primary 'Mizushima, T.' 14 primary 'Sasakawa, C.' 15 # _cell.entry_id 3B21 _cell.length_a 67.699 _cell.length_b 91.237 _cell.length_c 67.862 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B21 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ORF169b 24150.873 1 ? ? ? ? 2 water nat water 18.015 127 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name OspI # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMA MLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFND GEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMA MLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFND GEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 PRO n 1 7 GLU n 1 8 PHE n 1 9 MET n 1 10 ILE n 1 11 ASN n 1 12 GLY n 1 13 VAL n 1 14 SER n 1 15 LEU n 1 16 GLN n 1 17 GLY n 1 18 THR n 1 19 ALA n 1 20 GLY n 1 21 TYR n 1 22 GLU n 1 23 ALA n 1 24 HIS n 1 25 THR n 1 26 GLU n 1 27 GLU n 1 28 GLY n 1 29 ASN n 1 30 VAL n 1 31 ASN n 1 32 VAL n 1 33 LYS n 1 34 LYS n 1 35 LEU n 1 36 LEU n 1 37 GLU n 1 38 SER n 1 39 LEU n 1 40 ASN n 1 41 SER n 1 42 LYS n 1 43 SER n 1 44 LEU n 1 45 GLY n 1 46 ASP n 1 47 MET n 1 48 ASP n 1 49 LYS n 1 50 ASP n 1 51 SER n 1 52 GLU n 1 53 LEU n 1 54 ALA n 1 55 ALA n 1 56 THR n 1 57 LEU n 1 58 GLN n 1 59 LYS n 1 60 MET n 1 61 ILE n 1 62 ASN n 1 63 PRO n 1 64 SER n 1 65 GLY n 1 66 GLY n 1 67 ASP n 1 68 GLY n 1 69 ASN n 1 70 CYS n 1 71 SER n 1 72 GLY n 1 73 CYS n 1 74 ALA n 1 75 LEU n 1 76 HIS n 1 77 ALA n 1 78 CYS n 1 79 MET n 1 80 ALA n 1 81 MET n 1 82 LEU n 1 83 GLY n 1 84 TYR n 1 85 GLY n 1 86 VAL n 1 87 ARG n 1 88 GLU n 1 89 ALA n 1 90 PRO n 1 91 VAL n 1 92 PRO n 1 93 ASN n 1 94 GLU n 1 95 ILE n 1 96 SER n 1 97 GLU n 1 98 TYR n 1 99 MET n 1 100 THR n 1 101 GLY n 1 102 PHE n 1 103 PHE n 1 104 HIS n 1 105 ARG n 1 106 HIS n 1 107 LEU n 1 108 GLU n 1 109 GLN n 1 110 ILE n 1 111 ASP n 1 112 SER n 1 113 GLU n 1 114 GLY n 1 115 ILE n 1 116 VAL n 1 117 SER n 1 118 HIS n 1 119 PRO n 1 120 ASN n 1 121 GLU n 1 122 THR n 1 123 TYR n 1 124 SER n 1 125 LYS n 1 126 PHE n 1 127 ARG n 1 128 GLU n 1 129 ARG n 1 130 ILE n 1 131 ALA n 1 132 GLU n 1 133 ASN n 1 134 ILE n 1 135 LEU n 1 136 GLN n 1 137 ASN n 1 138 THR n 1 139 SER n 1 140 LYS n 1 141 GLY n 1 142 SER n 1 143 VAL n 1 144 VAL n 1 145 MET n 1 146 ILE n 1 147 SER n 1 148 ILE n 1 149 GLU n 1 150 GLN n 1 151 ALA n 1 152 THR n 1 153 HIS n 1 154 TRP n 1 155 ILE n 1 156 ALA n 1 157 GLY n 1 158 PHE n 1 159 ASN n 1 160 ASP n 1 161 GLY n 1 162 GLU n 1 163 LYS n 1 164 ILE n 1 165 MET n 1 166 PHE n 1 167 LEU n 1 168 ASP n 1 169 VAL n 1 170 GLN n 1 171 THR n 1 172 GLY n 1 173 LYS n 1 174 GLY n 1 175 PHE n 1 176 ASN n 1 177 LEU n 1 178 TYR n 1 179 ASP n 1 180 PRO n 1 181 VAL n 1 182 GLU n 1 183 LYS n 1 184 SER n 1 185 PRO n 1 186 ASP n 1 187 ALA n 1 188 PHE n 1 189 VAL n 1 190 ASP n 1 191 GLU n 1 192 ASN n 1 193 SER n 1 194 SER n 1 195 VAL n 1 196 GLN n 1 197 VAL n 1 198 ILE n 1 199 HIS n 1 200 VAL n 1 201 SER n 1 202 ASP n 1 203 GLN n 1 204 GLU n 1 205 PHE n 1 206 ASP n 1 207 HIS n 1 208 TYR n 1 209 ALA n 1 210 ASN n 1 211 SER n 1 212 SER n 1 213 SER n 1 214 TRP n 1 215 LYS n 1 216 SER n 1 217 LYS n 1 218 ARG n 1 219 LEU n 1 220 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ORF169b _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 2a _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 623 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8VSD5_SHIFL _struct_ref.pdbx_db_accession Q8VSD5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVRE APVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B21 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 220 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8VSD5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B21 GLY A 1 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -7 1 1 3B21 PRO A 2 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -6 2 1 3B21 LEU A 3 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -5 3 1 3B21 GLY A 4 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -4 4 1 3B21 SER A 5 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -3 5 1 3B21 PRO A 6 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -2 6 1 3B21 GLU A 7 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' -1 7 1 3B21 PHE A 8 ? UNP Q8VSD5 ? ? 'EXPRESSION TAG' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3B21 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M MES, 0.1M NaAcetate, 1.0M NaCl, 24%(w/v) PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker DIP-6040' _diffrn_detector.pdbx_collection_date 2007-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.90 # _reflns.entry_id 3B21 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs 14220 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3B21 _refine.ls_number_reflns_obs 13480 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.62 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 98.67 _refine.ls_R_factor_obs 0.18359 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18138 _refine.ls_R_factor_R_free 0.22562 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 715 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 16.513 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.179 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.102 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.545 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1491 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1618 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 45.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 1529 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.966 1.941 ? 2066 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.728 5.000 ? 195 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.508 25.676 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.569 15.000 ? 269 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.153 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.071 0.200 ? 223 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1167 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.711 1.500 ? 957 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.871 2.000 ? 1540 'X-RAY DIFFRACTION' ? r_scbond_it 4.554 3.000 ? 572 'X-RAY DIFFRACTION' ? r_scangle_it 7.257 4.500 ? 524 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.008 _refine_ls_shell.d_res_low 2.060 _refine_ls_shell.number_reflns_R_work 840 _refine_ls_shell.R_factor_R_work 0.179 _refine_ls_shell.percent_reflns_obs 84.81 _refine_ls_shell.R_factor_R_free 0.219 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3B21 _struct.title 'Crystal structure of OspI from Shigella flexineri' _struct.pdbx_descriptor ORF169b _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B21 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'Shigella, Bacterial protein, effector, type 3 secretion system, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 31 ? SER A 41 ? ASN A 23 SER A 33 1 ? 11 HELX_P HELX_P2 2 GLY A 45 ? ASN A 62 ? GLY A 37 ASN A 54 1 ? 18 HELX_P HELX_P3 3 CYS A 70 ? LEU A 82 ? CYS A 62 LEU A 74 1 ? 13 HELX_P HELX_P4 4 VAL A 91 ? PHE A 102 ? VAL A 83 PHE A 94 5 ? 12 HELX_P HELX_P5 5 HIS A 106 ? ASP A 111 ? HIS A 98 ASP A 103 1 ? 6 HELX_P HELX_P6 6 THR A 122 ? THR A 138 ? THR A 114 THR A 130 1 ? 17 HELX_P HELX_P7 7 SER A 201 ? ASN A 210 ? SER A 193 ASN A 202 1 ? 10 HELX_P HELX_P8 8 SER A 211 ? LYS A 217 ? SER A 203 LYS A 209 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 70 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 73 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 62 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 65 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.055 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 115 ? VAL A 116 ? ILE A 107 VAL A 108 A 2 SER A 194 ? ILE A 198 ? SER A 186 ILE A 190 A 3 VAL A 143 ? ILE A 148 ? VAL A 135 ILE A 140 A 4 HIS A 153 ? ASN A 159 ? HIS A 145 ASN A 151 A 5 ILE A 164 ? LEU A 167 ? ILE A 156 LEU A 159 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 115 ? N ILE A 107 O VAL A 195 ? O VAL A 187 A 2 3 O ILE A 198 ? O ILE A 190 N MET A 145 ? N MET A 137 A 3 4 N ILE A 146 ? N ILE A 138 O ILE A 155 ? O ILE A 147 A 4 5 N ALA A 156 ? N ALA A 148 O LEU A 167 ? O LEU A 159 # _database_PDB_matrix.entry_id 3B21 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3B21 _atom_sites.fract_transf_matrix[1][1] 0.014771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010960 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014736 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -7 ? ? ? A . n A 1 2 PRO 2 -6 ? ? ? A . n A 1 3 LEU 3 -5 ? ? ? A . n A 1 4 GLY 4 -4 ? ? ? A . n A 1 5 SER 5 -3 ? ? ? A . n A 1 6 PRO 6 -2 ? ? ? A . n A 1 7 GLU 7 -1 ? ? ? A . n A 1 8 PHE 8 0 ? ? ? A . n A 1 9 MET 9 1 ? ? ? A . n A 1 10 ILE 10 2 ? ? ? A . n A 1 11 ASN 11 3 ? ? ? A . n A 1 12 GLY 12 4 ? ? ? A . n A 1 13 VAL 13 5 ? ? ? A . n A 1 14 SER 14 6 ? ? ? A . n A 1 15 LEU 15 7 ? ? ? A . n A 1 16 GLN 16 8 ? ? ? A . n A 1 17 GLY 17 9 ? ? ? A . n A 1 18 THR 18 10 ? ? ? A . n A 1 19 ALA 19 11 ? ? ? A . n A 1 20 GLY 20 12 ? ? ? A . n A 1 21 TYR 21 13 ? ? ? A . n A 1 22 GLU 22 14 ? ? ? A . n A 1 23 ALA 23 15 ? ? ? A . n A 1 24 HIS 24 16 ? ? ? A . n A 1 25 THR 25 17 ? ? ? A . n A 1 26 GLU 26 18 ? ? ? A . n A 1 27 GLU 27 19 ? ? ? A . n A 1 28 GLY 28 20 ? ? ? A . n A 1 29 ASN 29 21 21 ASN ASN A . n A 1 30 VAL 30 22 22 VAL VAL A . n A 1 31 ASN 31 23 23 ASN ASN A . n A 1 32 VAL 32 24 24 VAL VAL A . n A 1 33 LYS 33 25 25 LYS LYS A . n A 1 34 LYS 34 26 26 LYS LYS A . n A 1 35 LEU 35 27 27 LEU LEU A . n A 1 36 LEU 36 28 28 LEU LEU A . n A 1 37 GLU 37 29 29 GLU GLU A . n A 1 38 SER 38 30 30 SER SER A . n A 1 39 LEU 39 31 31 LEU LEU A . n A 1 40 ASN 40 32 32 ASN ASN A . n A 1 41 SER 41 33 33 SER SER A . n A 1 42 LYS 42 34 34 LYS LYS A . n A 1 43 SER 43 35 35 SER SER A . n A 1 44 LEU 44 36 36 LEU LEU A . n A 1 45 GLY 45 37 37 GLY GLY A . n A 1 46 ASP 46 38 38 ASP ASP A . n A 1 47 MET 47 39 39 MET MET A . n A 1 48 ASP 48 40 40 ASP ASP A . n A 1 49 LYS 49 41 41 LYS LYS A . n A 1 50 ASP 50 42 42 ASP ASP A . n A 1 51 SER 51 43 43 SER SER A . n A 1 52 GLU 52 44 44 GLU GLU A . n A 1 53 LEU 53 45 45 LEU LEU A . n A 1 54 ALA 54 46 46 ALA ALA A . n A 1 55 ALA 55 47 47 ALA ALA A . n A 1 56 THR 56 48 48 THR THR A . n A 1 57 LEU 57 49 49 LEU LEU A . n A 1 58 GLN 58 50 50 GLN GLN A . n A 1 59 LYS 59 51 51 LYS LYS A . n A 1 60 MET 60 52 52 MET MET A . n A 1 61 ILE 61 53 53 ILE ILE A . n A 1 62 ASN 62 54 54 ASN ASN A . n A 1 63 PRO 63 55 55 PRO PRO A . n A 1 64 SER 64 56 56 SER SER A . n A 1 65 GLY 65 57 57 GLY GLY A . n A 1 66 GLY 66 58 58 GLY GLY A . n A 1 67 ASP 67 59 59 ASP ASP A . n A 1 68 GLY 68 60 60 GLY GLY A . n A 1 69 ASN 69 61 61 ASN ASN A . n A 1 70 CYS 70 62 62 CYS CYS A . n A 1 71 SER 71 63 63 SER SER A . n A 1 72 GLY 72 64 64 GLY GLY A . n A 1 73 CYS 73 65 65 CYS CYS A . n A 1 74 ALA 74 66 66 ALA ALA A . n A 1 75 LEU 75 67 67 LEU LEU A . n A 1 76 HIS 76 68 68 HIS HIS A . n A 1 77 ALA 77 69 69 ALA ALA A . n A 1 78 CYS 78 70 70 CYS CYS A . n A 1 79 MET 79 71 71 MET MET A . n A 1 80 ALA 80 72 72 ALA ALA A . n A 1 81 MET 81 73 73 MET MET A . n A 1 82 LEU 82 74 74 LEU LEU A . n A 1 83 GLY 83 75 75 GLY GLY A . n A 1 84 TYR 84 76 76 TYR TYR A . n A 1 85 GLY 85 77 77 GLY GLY A . n A 1 86 VAL 86 78 78 VAL VAL A . n A 1 87 ARG 87 79 79 ARG ARG A . n A 1 88 GLU 88 80 80 GLU GLU A . n A 1 89 ALA 89 81 81 ALA ALA A . n A 1 90 PRO 90 82 82 PRO PRO A . n A 1 91 VAL 91 83 83 VAL VAL A . n A 1 92 PRO 92 84 84 PRO PRO A . n A 1 93 ASN 93 85 85 ASN ASN A . n A 1 94 GLU 94 86 86 GLU GLU A . n A 1 95 ILE 95 87 87 ILE ILE A . n A 1 96 SER 96 88 88 SER SER A . n A 1 97 GLU 97 89 89 GLU GLU A . n A 1 98 TYR 98 90 90 TYR TYR A . n A 1 99 MET 99 91 91 MET MET A . n A 1 100 THR 100 92 92 THR THR A . n A 1 101 GLY 101 93 93 GLY GLY A . n A 1 102 PHE 102 94 94 PHE PHE A . n A 1 103 PHE 103 95 95 PHE PHE A . n A 1 104 HIS 104 96 96 HIS HIS A . n A 1 105 ARG 105 97 97 ARG ARG A . n A 1 106 HIS 106 98 98 HIS HIS A . n A 1 107 LEU 107 99 99 LEU LEU A . n A 1 108 GLU 108 100 100 GLU GLU A . n A 1 109 GLN 109 101 101 GLN GLN A . n A 1 110 ILE 110 102 102 ILE ILE A . n A 1 111 ASP 111 103 103 ASP ASP A . n A 1 112 SER 112 104 104 SER SER A . n A 1 113 GLU 113 105 105 GLU GLU A . n A 1 114 GLY 114 106 106 GLY GLY A . n A 1 115 ILE 115 107 107 ILE ILE A . n A 1 116 VAL 116 108 108 VAL VAL A . n A 1 117 SER 117 109 109 SER SER A . n A 1 118 HIS 118 110 110 HIS HIS A . n A 1 119 PRO 119 111 111 PRO PRO A . n A 1 120 ASN 120 112 112 ASN ASN A . n A 1 121 GLU 121 113 113 GLU GLU A . n A 1 122 THR 122 114 114 THR THR A . n A 1 123 TYR 123 115 115 TYR TYR A . n A 1 124 SER 124 116 116 SER SER A . n A 1 125 LYS 125 117 117 LYS LYS A . n A 1 126 PHE 126 118 118 PHE PHE A . n A 1 127 ARG 127 119 119 ARG ARG A . n A 1 128 GLU 128 120 120 GLU GLU A . n A 1 129 ARG 129 121 121 ARG ARG A . n A 1 130 ILE 130 122 122 ILE ILE A . n A 1 131 ALA 131 123 123 ALA ALA A . n A 1 132 GLU 132 124 124 GLU GLU A . n A 1 133 ASN 133 125 125 ASN ASN A . n A 1 134 ILE 134 126 126 ILE ILE A . n A 1 135 LEU 135 127 127 LEU LEU A . n A 1 136 GLN 136 128 128 GLN GLN A . n A 1 137 ASN 137 129 129 ASN ASN A . n A 1 138 THR 138 130 130 THR THR A . n A 1 139 SER 139 131 131 SER SER A . n A 1 140 LYS 140 132 132 LYS LYS A . n A 1 141 GLY 141 133 133 GLY GLY A . n A 1 142 SER 142 134 134 SER SER A . n A 1 143 VAL 143 135 135 VAL VAL A . n A 1 144 VAL 144 136 136 VAL VAL A . n A 1 145 MET 145 137 137 MET MET A . n A 1 146 ILE 146 138 138 ILE ILE A . n A 1 147 SER 147 139 139 SER SER A . n A 1 148 ILE 148 140 140 ILE ILE A . n A 1 149 GLU 149 141 141 GLU GLU A . n A 1 150 GLN 150 142 142 GLN GLN A . n A 1 151 ALA 151 143 143 ALA ALA A . n A 1 152 THR 152 144 144 THR THR A . n A 1 153 HIS 153 145 145 HIS HIS A . n A 1 154 TRP 154 146 146 TRP TRP A . n A 1 155 ILE 155 147 147 ILE ILE A . n A 1 156 ALA 156 148 148 ALA ALA A . n A 1 157 GLY 157 149 149 GLY GLY A . n A 1 158 PHE 158 150 150 PHE PHE A . n A 1 159 ASN 159 151 151 ASN ASN A . n A 1 160 ASP 160 152 152 ASP ASP A . n A 1 161 GLY 161 153 153 GLY GLY A . n A 1 162 GLU 162 154 154 GLU GLU A . n A 1 163 LYS 163 155 155 LYS LYS A . n A 1 164 ILE 164 156 156 ILE ILE A . n A 1 165 MET 165 157 157 MET MET A . n A 1 166 PHE 166 158 158 PHE PHE A . n A 1 167 LEU 167 159 159 LEU LEU A . n A 1 168 ASP 168 160 160 ASP ASP A . n A 1 169 VAL 169 161 161 VAL VAL A . n A 1 170 GLN 170 162 162 GLN GLN A . n A 1 171 THR 171 163 163 THR THR A . n A 1 172 GLY 172 164 164 GLY GLY A . n A 1 173 LYS 173 165 165 LYS LYS A . n A 1 174 GLY 174 166 166 GLY GLY A . n A 1 175 PHE 175 167 167 PHE PHE A . n A 1 176 ASN 176 168 168 ASN ASN A . n A 1 177 LEU 177 169 169 LEU LEU A . n A 1 178 TYR 178 170 170 TYR TYR A . n A 1 179 ASP 179 171 171 ASP ASP A . n A 1 180 PRO 180 172 172 PRO PRO A . n A 1 181 VAL 181 173 173 VAL VAL A . n A 1 182 GLU 182 174 174 GLU GLU A . n A 1 183 LYS 183 175 175 LYS LYS A . n A 1 184 SER 184 176 176 SER SER A . n A 1 185 PRO 185 177 177 PRO PRO A . n A 1 186 ASP 186 178 178 ASP ASP A . n A 1 187 ALA 187 179 179 ALA ALA A . n A 1 188 PHE 188 180 180 PHE PHE A . n A 1 189 VAL 189 181 181 VAL VAL A . n A 1 190 ASP 190 182 182 ASP ASP A . n A 1 191 GLU 191 183 183 GLU GLU A . n A 1 192 ASN 192 184 184 ASN ASN A . n A 1 193 SER 193 185 185 SER SER A . n A 1 194 SER 194 186 186 SER SER A . n A 1 195 VAL 195 187 187 VAL VAL A . n A 1 196 GLN 196 188 188 GLN GLN A . n A 1 197 VAL 197 189 189 VAL VAL A . n A 1 198 ILE 198 190 190 ILE ILE A . n A 1 199 HIS 199 191 191 HIS HIS A . n A 1 200 VAL 200 192 192 VAL VAL A . n A 1 201 SER 201 193 193 SER SER A . n A 1 202 ASP 202 194 194 ASP ASP A . n A 1 203 GLN 203 195 195 GLN GLN A . n A 1 204 GLU 204 196 196 GLU GLU A . n A 1 205 PHE 205 197 197 PHE PHE A . n A 1 206 ASP 206 198 198 ASP ASP A . n A 1 207 HIS 207 199 199 HIS HIS A . n A 1 208 TYR 208 200 200 TYR TYR A . n A 1 209 ALA 209 201 201 ALA ALA A . n A 1 210 ASN 210 202 202 ASN ASN A . n A 1 211 SER 211 203 203 SER SER A . n A 1 212 SER 212 204 204 SER SER A . n A 1 213 SER 213 205 205 SER SER A . n A 1 214 TRP 214 206 206 TRP TRP A . n A 1 215 LYS 215 207 207 LYS LYS A . n A 1 216 SER 216 208 208 SER SER A . n A 1 217 LYS 217 209 209 LYS LYS A . n A 1 218 ARG 218 210 210 ARG ARG A . n A 1 219 LEU 219 211 211 LEU LEU A . n A 1 220 CYS 220 212 212 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-22 2 'Structure model' 1 1 2012-03-14 3 'Structure model' 1 2 2012-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MLPHARE phasing . ? 1 REFMAC refinement 5.5.0109 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 85 ? ? O A HOH 339 ? ? 2.14 2 1 OG A SER 131 ? ? O A HOH 274 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 61 ? ? -101.93 71.23 2 1 TYR A 90 ? ? -161.27 -57.47 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -7 ? A GLY 1 2 1 Y 1 A PRO -6 ? A PRO 2 3 1 Y 1 A LEU -5 ? A LEU 3 4 1 Y 1 A GLY -4 ? A GLY 4 5 1 Y 1 A SER -3 ? A SER 5 6 1 Y 1 A PRO -2 ? A PRO 6 7 1 Y 1 A GLU -1 ? A GLU 7 8 1 Y 1 A PHE 0 ? A PHE 8 9 1 Y 1 A MET 1 ? A MET 9 10 1 Y 1 A ILE 2 ? A ILE 10 11 1 Y 1 A ASN 3 ? A ASN 11 12 1 Y 1 A GLY 4 ? A GLY 12 13 1 Y 1 A VAL 5 ? A VAL 13 14 1 Y 1 A SER 6 ? A SER 14 15 1 Y 1 A LEU 7 ? A LEU 15 16 1 Y 1 A GLN 8 ? A GLN 16 17 1 Y 1 A GLY 9 ? A GLY 17 18 1 Y 1 A THR 10 ? A THR 18 19 1 Y 1 A ALA 11 ? A ALA 19 20 1 Y 1 A GLY 12 ? A GLY 20 21 1 Y 1 A TYR 13 ? A TYR 21 22 1 Y 1 A GLU 14 ? A GLU 22 23 1 Y 1 A ALA 15 ? A ALA 23 24 1 Y 1 A HIS 16 ? A HIS 24 25 1 Y 1 A THR 17 ? A THR 25 26 1 Y 1 A GLU 18 ? A GLU 26 27 1 Y 1 A GLU 19 ? A GLU 27 28 1 Y 1 A GLY 20 ? A GLY 28 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 213 1 HOH HOH A . B 2 HOH 2 214 2 HOH HOH A . B 2 HOH 3 215 3 HOH HOH A . B 2 HOH 4 216 4 HOH HOH A . B 2 HOH 5 217 5 HOH HOH A . B 2 HOH 6 218 6 HOH HOH A . B 2 HOH 7 219 7 HOH HOH A . B 2 HOH 8 220 8 HOH HOH A . B 2 HOH 9 221 9 HOH HOH A . B 2 HOH 10 222 10 HOH HOH A . B 2 HOH 11 223 11 HOH HOH A . B 2 HOH 12 224 12 HOH HOH A . B 2 HOH 13 225 13 HOH HOH A . B 2 HOH 14 226 14 HOH HOH A . B 2 HOH 15 227 15 HOH HOH A . B 2 HOH 16 228 16 HOH HOH A . B 2 HOH 17 229 17 HOH HOH A . B 2 HOH 18 230 18 HOH HOH A . B 2 HOH 19 231 19 HOH HOH A . B 2 HOH 20 232 20 HOH HOH A . B 2 HOH 21 233 21 HOH HOH A . B 2 HOH 22 234 22 HOH HOH A . B 2 HOH 23 235 23 HOH HOH A . B 2 HOH 24 236 24 HOH HOH A . B 2 HOH 25 237 25 HOH HOH A . B 2 HOH 26 238 26 HOH HOH A . B 2 HOH 27 239 27 HOH HOH A . B 2 HOH 28 240 28 HOH HOH A . B 2 HOH 29 241 29 HOH HOH A . B 2 HOH 30 242 30 HOH HOH A . B 2 HOH 31 243 31 HOH HOH A . B 2 HOH 32 244 32 HOH HOH A . B 2 HOH 33 245 33 HOH HOH A . B 2 HOH 34 246 34 HOH HOH A . B 2 HOH 35 247 35 HOH HOH A . B 2 HOH 36 248 36 HOH HOH A . B 2 HOH 37 249 37 HOH HOH A . B 2 HOH 38 250 38 HOH HOH A . B 2 HOH 39 251 39 HOH HOH A . B 2 HOH 40 252 40 HOH HOH A . B 2 HOH 41 253 41 HOH HOH A . B 2 HOH 42 254 42 HOH HOH A . B 2 HOH 43 255 43 HOH HOH A . B 2 HOH 44 256 44 HOH HOH A . B 2 HOH 45 257 45 HOH HOH A . B 2 HOH 46 258 46 HOH HOH A . B 2 HOH 47 259 47 HOH HOH A . B 2 HOH 48 260 48 HOH HOH A . B 2 HOH 49 261 49 HOH HOH A . B 2 HOH 50 262 50 HOH HOH A . B 2 HOH 51 263 51 HOH HOH A . B 2 HOH 52 264 52 HOH HOH A . B 2 HOH 53 265 53 HOH HOH A . B 2 HOH 54 266 54 HOH HOH A . B 2 HOH 55 267 55 HOH HOH A . B 2 HOH 56 268 56 HOH HOH A . B 2 HOH 57 269 57 HOH HOH A . B 2 HOH 58 270 59 HOH HOH A . B 2 HOH 59 271 60 HOH HOH A . B 2 HOH 60 272 61 HOH HOH A . B 2 HOH 61 273 62 HOH HOH A . B 2 HOH 62 274 63 HOH HOH A . B 2 HOH 63 275 64 HOH HOH A . B 2 HOH 64 276 65 HOH HOH A . B 2 HOH 65 277 66 HOH HOH A . B 2 HOH 66 278 67 HOH HOH A . B 2 HOH 67 279 68 HOH HOH A . B 2 HOH 68 280 69 HOH HOH A . B 2 HOH 69 281 70 HOH HOH A . B 2 HOH 70 282 71 HOH HOH A . B 2 HOH 71 283 72 HOH HOH A . B 2 HOH 72 284 73 HOH HOH A . B 2 HOH 73 285 74 HOH HOH A . B 2 HOH 74 286 75 HOH HOH A . B 2 HOH 75 287 76 HOH HOH A . B 2 HOH 76 288 77 HOH HOH A . B 2 HOH 77 289 78 HOH HOH A . B 2 HOH 78 290 79 HOH HOH A . B 2 HOH 79 291 80 HOH HOH A . B 2 HOH 80 292 81 HOH HOH A . B 2 HOH 81 293 82 HOH HOH A . B 2 HOH 82 294 83 HOH HOH A . B 2 HOH 83 295 84 HOH HOH A . B 2 HOH 84 296 85 HOH HOH A . B 2 HOH 85 297 86 HOH HOH A . B 2 HOH 86 298 87 HOH HOH A . B 2 HOH 87 299 88 HOH HOH A . B 2 HOH 88 300 89 HOH HOH A . B 2 HOH 89 301 90 HOH HOH A . B 2 HOH 90 302 91 HOH HOH A . B 2 HOH 91 303 92 HOH HOH A . B 2 HOH 92 304 93 HOH HOH A . B 2 HOH 93 305 94 HOH HOH A . B 2 HOH 94 306 95 HOH HOH A . B 2 HOH 95 307 96 HOH HOH A . B 2 HOH 96 308 97 HOH HOH A . B 2 HOH 97 309 98 HOH HOH A . B 2 HOH 98 310 99 HOH HOH A . B 2 HOH 99 311 100 HOH HOH A . B 2 HOH 100 312 101 HOH HOH A . B 2 HOH 101 313 102 HOH HOH A . B 2 HOH 102 314 103 HOH HOH A . B 2 HOH 103 315 104 HOH HOH A . B 2 HOH 104 316 105 HOH HOH A . B 2 HOH 105 317 106 HOH HOH A . B 2 HOH 106 318 107 HOH HOH A . B 2 HOH 107 319 108 HOH HOH A . B 2 HOH 108 320 109 HOH HOH A . B 2 HOH 109 321 111 HOH HOH A . B 2 HOH 110 322 112 HOH HOH A . B 2 HOH 111 323 113 HOH HOH A . B 2 HOH 112 324 114 HOH HOH A . B 2 HOH 113 325 115 HOH HOH A . B 2 HOH 114 326 116 HOH HOH A . B 2 HOH 115 327 117 HOH HOH A . B 2 HOH 116 328 118 HOH HOH A . B 2 HOH 117 329 119 HOH HOH A . B 2 HOH 118 330 120 HOH HOH A . B 2 HOH 119 331 121 HOH HOH A . B 2 HOH 120 332 122 HOH HOH A . B 2 HOH 121 333 123 HOH HOH A . B 2 HOH 122 334 124 HOH HOH A . B 2 HOH 123 335 125 HOH HOH A . B 2 HOH 124 336 126 HOH HOH A . B 2 HOH 125 337 127 HOH HOH A . B 2 HOH 126 338 128 HOH HOH A . B 2 HOH 127 339 129 HOH HOH A . #