HEADER TRANSFERASE 26-JUL-11 3B2B OBSLTE 11-JAN-12 3B2B 3UWD TITLE CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE KINASE FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.2.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX; SOURCE 4 ORGANISM_TAXID: 260799; SOURCE 5 STRAIN: STERNE; SOURCE 6 GENE: PGK, BAS4988, BA_5367, GBAA_5367; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ROSSMANN FOLD, PHOSPHOGLYCERATE KINASE, KEYWDS 3 PHOSPHOGLYCERATE, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHENG,M.CHRUSZCZ,P.POREBSKI,M.KUDRITSKA,S.GRIMSHAW,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 2 11-JAN-12 3B2B 1 OBSLTE REVDAT 1 24-AUG-11 3B2B 0 JRNL AUTH H.ZHENG,P.DWORZYNSKI,M.CHRUSZCZ,P.POREBSKI,D.R.COOPER, JRNL AUTH 2 M.KUDRITSKA,S.GRIMSHAW,A.SAVCHENKO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOGLYCERATE KINASE FROM JRNL TITL 2 BACILLUS ANTHRACIS AT 1.68A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 37863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3140 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2133 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4266 ; 1.483 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5266 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 6.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;38.439 ;25.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;13.238 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3545 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 587 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2009 ; 0.680 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 838 ; 0.192 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3223 ; 1.216 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 2.273 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1029 ; 3.716 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9030 25.8280 20.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.2780 REMARK 3 T33: 0.2020 T12: 0.1287 REMARK 3 T13: -0.0679 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 8.2052 L22: 4.3966 REMARK 3 L33: 3.6117 L12: -1.6202 REMARK 3 L13: 2.5573 L23: -1.2006 REMARK 3 S TENSOR REMARK 3 S11: -0.3483 S12: -1.1373 S13: 0.3016 REMARK 3 S21: 0.4687 S22: 0.2560 S23: -0.2177 REMARK 3 S31: -0.1241 S32: -0.0505 S33: 0.0924 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1670 26.1330 10.7160 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.1575 REMARK 3 T33: 0.2436 T12: 0.0636 REMARK 3 T13: -0.0309 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 8.0055 L22: 1.2600 REMARK 3 L33: 1.4805 L12: -2.8823 REMARK 3 L13: 1.4655 L23: -0.8081 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.3020 S13: 0.5041 REMARK 3 S21: -0.0633 S22: -0.0940 S23: -0.1666 REMARK 3 S31: 0.1356 S32: 0.3340 S33: 0.1325 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9030 34.3970 10.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.0390 REMARK 3 T33: 0.1181 T12: -0.0041 REMARK 3 T13: 0.0092 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.7977 L22: 1.2302 REMARK 3 L33: 1.5302 L12: -0.1156 REMARK 3 L13: 0.3001 L23: 0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: -0.0685 S13: -0.3199 REMARK 3 S21: -0.0455 S22: 0.1205 S23: -0.0161 REMARK 3 S31: 0.0742 S32: -0.0373 S33: -0.1818 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6220 49.9220 9.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.0836 REMARK 3 T33: 0.0348 T12: 0.0397 REMARK 3 T13: 0.0506 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.9897 L22: 2.4505 REMARK 3 L33: 1.7070 L12: 0.3745 REMARK 3 L13: 0.4668 L23: 0.4553 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0566 S13: -0.0654 REMARK 3 S21: -0.1793 S22: 0.0937 S23: 0.0574 REMARK 3 S31: -0.2710 S32: -0.2271 S33: -0.0795 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0810 43.7390 24.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1537 REMARK 3 T33: 0.0600 T12: 0.0193 REMARK 3 T13: 0.0395 T23: 0.0672 REMARK 3 L TENSOR REMARK 3 L11: 0.6130 L22: 1.8725 REMARK 3 L33: 1.4525 L12: 0.0344 REMARK 3 L13: 0.2666 L23: 0.9053 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.2332 S13: -0.1360 REMARK 3 S21: 0.1462 S22: -0.0027 S23: -0.0257 REMARK 3 S31: -0.0089 S32: -0.1759 S33: -0.0506 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0950 29.2390 6.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: 0.1128 REMARK 3 T33: 0.2606 T12: 0.0256 REMARK 3 T13: -0.0673 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 6.5234 L22: 4.4258 REMARK 3 L33: 1.2551 L12: -5.3742 REMARK 3 L13: 0.5871 L23: -0.1040 REMARK 3 S TENSOR REMARK 3 S11: 0.1853 S12: 0.1665 S13: -0.0792 REMARK 3 S21: -0.0760 S22: -0.0399 S23: -0.0753 REMARK 3 S31: 0.1268 S32: 0.0761 S33: -0.1454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; REMARK 3 COOT HAS ALSO BEEN USED DURING REFINEMENT OF THE MODEL. REMARK 4 REMARK 4 3B2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB029989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 24.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : 0.39800 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000: SHELXC/D/E, MLPHARE, DM, ARP/WARP, REMARK 200 RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG 3350, 0.2M NACL, 0.1M BIS- REMARK 280 TRIS, 2% W/V HEXANDIOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.84350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.84350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 395 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 27 REMARK 465 GLU A 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 89.60 -162.88 REMARK 500 ASN A 116 110.07 -30.80 REMARK 500 ALA A 157 -49.83 -152.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 723 O REMARK 620 2 HOH A 722 O 88.1 REMARK 620 3 ASP A 241 OD2 137.8 87.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 738 O REMARK 620 2 HOH A 406 O 89.7 REMARK 620 3 HOH A 739 O 179.3 91.0 REMARK 620 4 HOH A 407 O 90.5 179.7 88.9 REMARK 620 5 HOH A 737 O 86.0 91.2 93.7 89.2 REMARK 620 6 HOH A 736 O 93.9 88.0 86.3 91.6 179.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP04624 RELATED DB: TARGETDB DBREF 3B2B A 1 394 UNP Q81X75 PGK_BACAN 1 394 SEQADV 3B2B ALA A 190 UNP Q81X75 THR 190 ENGINEERED MUTATION SEQRES 1 A 394 MSE ASN LYS LYS SER ILE ARG ASP VAL ASP LEU LYS GLY SEQRES 2 A 394 LYS ARG VAL PHE CYS ARG VAL ASP PHE ASN VAL PRO MSE SEQRES 3 A 394 LYS GLU GLY LYS ILE THR ASP GLU THR ARG ILE ARG ALA SEQRES 4 A 394 ALA LEU PRO THR ILE GLN TYR LEU VAL GLU GLN GLY ALA SEQRES 5 A 394 LYS VAL ILE LEU ALA SER HIS LEU GLY ARG PRO LYS GLY SEQRES 6 A 394 GLN ALA VAL GLU GLU LEU ARG LEU THR PRO VAL ALA ALA SEQRES 7 A 394 ARG LEU GLY GLU LEU LEU GLY LYS ASP VAL LYS LYS ALA SEQRES 8 A 394 ASP GLU ALA PHE GLY PRO VAL ALA GLN GLU MSE VAL ALA SEQRES 9 A 394 ALA MSE ASN GLU GLY ASP VAL LEU VAL LEU GLU ASN VAL SEQRES 10 A 394 ARG PHE TYR ALA GLY GLU GLU LYS ASN ASP ALA GLU LEU SEQRES 11 A 394 ALA LYS GLU PHE ALA ALA LEU ALA ASP ILE PHE VAL ASN SEQRES 12 A 394 ASP ALA PHE GLY ALA ALA HIS ARG ALA HIS ALA SER THR SEQRES 13 A 394 ALA GLY ILE ALA ASP TYR LEU PRO ALA VAL SER GLY LEU SEQRES 14 A 394 LEU MSE GLU LYS GLU LEU GLU VAL LEU GLY LYS ALA LEU SEQRES 15 A 394 SER ASN PRO GLU ARG PRO PHE ALA ALA ILE ILE GLY GLY SEQRES 16 A 394 ALA LYS VAL LYS ASP LYS ILE GLY LEU ILE ARG HIS LEU SEQRES 17 A 394 LEU ASP LYS VAL ASP ASN LEU ILE ILE GLY GLY GLY LEU SEQRES 18 A 394 ALA TYR THR PHE VAL LYS ALA LEU GLY HIS GLU ILE GLY SEQRES 19 A 394 LEU SER LEU CYS GLU ASP ASP LYS ILE GLU LEU ALA LYS SEQRES 20 A 394 GLU PHE MSE GLN LEU ALA LYS GLU LYS GLY VAL ASN PHE SEQRES 21 A 394 TYR MSE PRO VAL ASP VAL VAL ILE THR GLU GLU PHE SER SEQRES 22 A 394 GLU THR ALA THR THR LYS ILE VAL GLY ILE ASP SER ILE SEQRES 23 A 394 PRO SER ASN TRP GLU GLY VAL ASP ILE GLY PRO LYS THR SEQRES 24 A 394 ARG GLU ILE TYR ALA ASP VAL ILE LYS ASN SER LYS LEU SEQRES 25 A 394 VAL VAL TRP ASN GLY PRO MSE GLY VAL PHE GLU MSE THR SEQRES 26 A 394 PRO PHE ALA GLU GLY THR LYS ALA VAL GLY GLN ALA LEU SEQRES 27 A 394 ALA ASP ALA GLU GLY THR TYR SER VAL ILE GLY GLY GLY SEQRES 28 A 394 ASP SER ALA ALA ALA VAL GLU LYS PHE GLY MSE ALA ASP SEQRES 29 A 394 LYS MSE SER HIS ILE SER THR GLY GLY GLY ALA SER LEU SEQRES 30 A 394 GLU PHE MSE GLU GLY LYS GLU LEU PRO GLY VAL VAL CYS SEQRES 31 A 394 LEU ASN ASP LYS MODRES 3B2B MSE A 1 MET SELENOMETHIONINE MODRES 3B2B MSE A 26 MET SELENOMETHIONINE MODRES 3B2B MSE A 102 MET SELENOMETHIONINE MODRES 3B2B MSE A 106 MET SELENOMETHIONINE MODRES 3B2B MSE A 171 MET SELENOMETHIONINE MODRES 3B2B MSE A 250 MET SELENOMETHIONINE MODRES 3B2B MSE A 262 MET SELENOMETHIONINE MODRES 3B2B MSE A 319 MET SELENOMETHIONINE MODRES 3B2B MSE A 324 MET SELENOMETHIONINE MODRES 3B2B MSE A 362 MET SELENOMETHIONINE MODRES 3B2B MSE A 366 MET SELENOMETHIONINE MODRES 3B2B MSE A 380 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 102 8 HET MSE A 106 8 HET MSE A 171 16 HET MSE A 250 8 HET MSE A 262 8 HET MSE A 319 8 HET MSE A 324 8 HET MSE A 362 8 HET MSE A 366 8 HET MSE A 380 8 HET CL A 395 1 HET CL A 396 1 HET CL A 397 1 HET CL A 398 1 HET CL A 399 1 HET CL A 400 1 HET CL A 401 1 HET MG A 402 1 HET MG A 403 1 HET BTB A 404 14 HET UNL A 405 8 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM UNL UNKNOWN LIGAND HETSYN BTB BIS-TRIS BUFFER FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 CL 7(CL 1-) FORMUL 9 MG 2(MG 2+) FORMUL 11 BTB C8 H19 N O5 FORMUL 13 HOH *334(H2 O) HELIX 1 1 SER A 5 VAL A 9 5 5 HELIX 2 2 GLU A 34 GLN A 50 1 17 HELIX 3 3 VAL A 68 ARG A 72 5 5 HELIX 4 4 LEU A 73 GLY A 85 1 13 HELIX 5 5 GLY A 96 ALA A 105 1 10 HELIX 6 6 ASN A 116 PHE A 119 5 4 HELIX 7 7 TYR A 120 ASN A 126 1 7 HELIX 8 8 ASP A 127 ALA A 136 1 10 HELIX 9 9 ALA A 145 ALA A 149 5 5 HELIX 10 10 ALA A 157 TYR A 162 5 6 HELIX 11 11 GLY A 168 ASN A 184 1 17 HELIX 12 12 LYS A 197 LEU A 209 1 13 HELIX 13 13 LEU A 221 LEU A 229 1 9 HELIX 14 14 GLU A 239 ASP A 241 5 3 HELIX 15 15 LYS A 242 GLY A 257 1 16 HELIX 16 16 ASP A 284 ILE A 286 5 3 HELIX 17 17 GLY A 296 ASN A 309 1 14 HELIX 18 18 MSE A 324 PHE A 327 5 4 HELIX 19 19 ALA A 328 ALA A 341 1 14 HELIX 20 20 GLY A 350 PHE A 360 1 11 HELIX 21 21 MSE A 362 MSE A 366 5 5 HELIX 22 22 GLY A 373 GLU A 381 1 9 HELIX 23 23 LEU A 385 CYS A 390 1 6 SHEET 1 A 6 LYS A 89 LYS A 90 0 SHEET 2 A 6 VAL A 111 VAL A 113 1 O VAL A 113 N LYS A 89 SHEET 3 A 6 LYS A 53 ALA A 57 1 N LEU A 56 O LEU A 112 SHEET 4 A 6 ARG A 15 ARG A 19 1 N CYS A 18 O ILE A 55 SHEET 5 A 6 ILE A 140 ASN A 143 1 O VAL A 142 N PHE A 17 SHEET 6 A 6 ALA A 165 SER A 167 1 O VAL A 166 N ASN A 143 SHEET 1 B 6 ASN A 259 TYR A 261 0 SHEET 2 B 6 ASN A 214 ILE A 217 1 N LEU A 215 O TYR A 261 SHEET 3 B 6 PHE A 189 ILE A 193 1 N ALA A 191 O ILE A 216 SHEET 4 B 6 LEU A 312 ASN A 316 1 O ASN A 316 N ILE A 192 SHEET 5 B 6 TYR A 345 ILE A 348 1 O VAL A 347 N TRP A 315 SHEET 6 B 6 HIS A 368 ILE A 369 1 O HIS A 368 N ILE A 348 SHEET 1 C 3 THR A 278 GLY A 282 0 SHEET 2 C 3 ASP A 265 THR A 269 -1 N VAL A 266 O VAL A 281 SHEET 3 C 3 GLU A 291 ILE A 295 -1 O VAL A 293 N VAL A 267 LINK C MSE A 1 N ASN A 2 1555 1555 1.34 LINK C PRO A 25 N MSE A 26 1555 1555 1.33 LINK C GLU A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N VAL A 103 1555 1555 1.34 LINK C ALA A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N ASN A 107 1555 1555 1.33 LINK C LEU A 170 N AMSE A 171 1555 1555 1.33 LINK C LEU A 170 N BMSE A 171 1555 1555 1.34 LINK C AMSE A 171 N GLU A 172 1555 1555 1.33 LINK C BMSE A 171 N GLU A 172 1555 1555 1.33 LINK C PHE A 249 N MSE A 250 1555 1555 1.33 LINK C MSE A 250 N GLN A 251 1555 1555 1.33 LINK C TYR A 261 N MSE A 262 1555 1555 1.34 LINK C MSE A 262 N PRO A 263 1555 1555 1.32 LINK C PRO A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N GLY A 320 1555 1555 1.32 LINK C GLU A 323 N MSE A 324 1555 1555 1.33 LINK C MSE A 324 N THR A 325 1555 1555 1.31 LINK C GLY A 361 N MSE A 362 1555 1555 1.34 LINK C MSE A 362 N ALA A 363 1555 1555 1.33 LINK C LYS A 365 N MSE A 366 1555 1555 1.33 LINK C MSE A 366 N SER A 367 1555 1555 1.34 LINK C PHE A 379 N MSE A 380 1555 1555 1.33 LINK C MSE A 380 N GLU A 381 1555 1555 1.34 LINK MG A MG A 403 O HOH A 723 1555 1555 1.97 LINK MG MG A 402 O HOH A 738 1555 1555 2.17 LINK MG MG A 402 O HOH A 406 1555 1555 2.17 LINK MG MG A 402 O HOH A 739 1555 1555 2.17 LINK MG MG A 402 O HOH A 407 1555 1555 2.17 LINK MG MG A 402 O HOH A 737 1555 1555 2.17 LINK MG MG A 402 O HOH A 736 1555 1555 2.19 LINK MG A MG A 403 O HOH A 722 1555 1555 2.26 LINK OD2AASP A 241 MG A MG A 403 1555 1555 2.36 CISPEP 1 ARG A 187 PRO A 188 0 6.33 SITE 1 AC1 2 ARG A 206 PHE A 249 SITE 1 AC2 4 GLY A 195 ALA A 196 GLY A 220 HOH A 511 SITE 1 AC3 3 LYS A 256 LYS A 383 GLU A 384 SITE 1 AC4 5 GLY A 317 GLY A 350 ASP A 352 SER A 353 SITE 2 AC4 5 HOH A 677 SITE 1 AC5 5 LYS A 180 GLU A 186 LEU A 312 HOH A 445 SITE 2 AC5 5 HOH A 448 SITE 1 AC6 4 ARG A 62 PRO A 63 LYS A 64 ARG A 118 SITE 1 AC7 3 LYS A 173 SER A 367 HIS A 368 SITE 1 AC8 6 HOH A 406 HOH A 407 HOH A 736 HOH A 737 SITE 2 AC8 6 HOH A 738 HOH A 739 SITE 1 AC9 3 ASP A 241 HOH A 722 HOH A 723 SITE 1 BC1 11 ARG A 187 ASP A 210 LYS A 211 VAL A 212 SITE 2 BC1 11 ASP A 213 LYS A 256 GLU A 384 HOH A 522 SITE 3 BC1 11 HOH A 561 HOH A 566 HOH A 711 CRYST1 119.687 45.334 68.607 90.00 97.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008355 0.000000 0.001167 0.00000 SCALE2 0.000000 0.022058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014717 0.00000 HETATM 1 N MSE A 1 7.019 21.047 3.765 1.00 47.74 N ANISOU 1 N MSE A 1 4497 4587 9054 -438 -3593 492 N HETATM 2 CA MSE A 1 8.444 20.959 4.238 1.00 44.91 C ANISOU 2 CA MSE A 1 4398 4276 8388 -327 -3262 378 C HETATM 3 C MSE A 1 8.626 19.865 5.290 1.00 44.16 C ANISOU 3 C MSE A 1 4177 4030 8571 -440 -3144 492 C HETATM 4 O MSE A 1 7.762 19.670 6.150 1.00 45.47 O ANISOU 4 O MSE A 1 3984 4196 9096 -561 -3076 784 O HETATM 5 CB MSE A 1 8.905 22.299 4.817 1.00 42.55 C ANISOU 5 CB MSE A 1 4092 4216 7859 -169 -2870 475 C HETATM 6 CG MSE A 1 10.309 22.295 5.375 1.00 41.64 C ANISOU 6 CG MSE A 1 4184 4159 7476 -70 -2552 386 C HETATM 7 SE MSE A 1 10.695 23.950 6.388 1.00 44.62 SE ANISOU 7 SE MSE A 1 4467 4766 7720 100 -2125 501 SE HETATM 8 CE MSE A 1 8.988 24.026 7.373 1.00 44.13 C ANISOU 8 CE MSE A 1 3907 4767 8093 47 -2093 766 C