data_3B31 # _entry.id 3B31 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3B31 pdb_00003b31 10.2210/pdb3b31/pdb NDB UR0129 ? ? RCSB RCSB045015 ? ? WWPDB D_1000045015 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq.db_align_beg' 5 4 'Structure model' '_struct_ref_seq.db_align_end' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B31 _pdbx_database_status.recvd_initial_deposition_date 2007-10-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kieft, J.S.' 1 'Costantino, D.A.' 2 'Pfingsten, J.S.' 3 'Rambo, R.P.' 4 # _citation.id primary _citation.title 'tRNA-mRNA mimicry drives translation initiation from a viral IRES.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 15 _citation.page_first 57 _citation.page_last 64 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18157151 _citation.pdbx_database_id_DOI 10.1038/nsmb1351 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Costantino, D.A.' 1 ? primary 'Pfingsten, J.S.' 2 ? primary 'Rambo, R.P.' 3 ? primary 'Kieft, J.S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (29-MER)' 9326.556 1 ? 'U6178A, A6198U, A6199G' 'residues 6174-6202' 'CrPV IGR IRES RNA' 2 polymer syn ;RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3') ; 4416.675 1 ? ? 'residues 6203-6216' 'CrPV IGR IRES RNA' 3 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 3 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 146 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUUAUUCAGAUUAGGUAGUCGAAUGACC GGUUAUUCAGAUUAGGUAGUCGAAUGACC A ? 2 polyribonucleotide no no UAAGAAAUUUACCU UAAGAAAUUUACCU B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'IRIDIUM HEXAMMINE ION' IRI 4 'PHOSPHATE ION' PO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 U n 1 5 A n 1 6 U n 1 7 U n 1 8 C n 1 9 A n 1 10 G n 1 11 A n 1 12 U n 1 13 U n 1 14 A n 1 15 G n 1 16 G n 1 17 U n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 A n 1 24 A n 1 25 U n 1 26 G n 1 27 A n 1 28 C n 1 29 C n 2 1 U n 2 2 A n 2 3 A n 2 4 G n 2 5 A n 2 6 A n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 A n 2 12 C n 2 13 C n 2 14 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA made by in vitro transcription. This naturally occurs in Cricket Paralysis Virus' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 6174 6174 G G A . n A 1 2 G 2 6175 6175 G G A . n A 1 3 U 3 6176 6176 U U A . n A 1 4 U 4 6177 6177 U U A . n A 1 5 A 5 6178 6178 A A A . n A 1 6 U 6 6179 6179 U U A . n A 1 7 U 7 6180 6180 U U A . n A 1 8 C 8 6181 6181 C C A . n A 1 9 A 9 6182 6182 A A A . n A 1 10 G 10 6183 6183 G G A . n A 1 11 A 11 6184 6184 A A A . n A 1 12 U 12 6185 6185 U U A . n A 1 13 U 13 6186 6186 U U A . n A 1 14 A 14 6187 6187 A A A . n A 1 15 G 15 6188 6188 G G A . n A 1 16 G 16 6189 6189 G G A . n A 1 17 U 17 6190 6190 U U A . n A 1 18 A 18 6191 6191 A A A . n A 1 19 G 19 6192 6192 G G A . n A 1 20 U 20 6193 6193 U U A . n A 1 21 C 21 6194 6194 C C A . n A 1 22 G 22 6195 6195 G G A . n A 1 23 A 23 6196 6196 A A A . n A 1 24 A 24 6197 6197 A A A . n A 1 25 U 25 6198 6198 U U A . n A 1 26 G 26 6199 6199 G G A . n A 1 27 A 27 6200 6200 A A A . n A 1 28 C 28 6201 6201 C C A . n A 1 29 C 29 6202 6202 C C A . n B 2 1 U 1 6203 6203 U U B . n B 2 2 A 2 6204 6204 A A B . n B 2 3 A 3 6205 6205 A A B . n B 2 4 G 4 6206 6206 G G B . n B 2 5 A 5 6207 6207 A A B . n B 2 6 A 6 6208 6208 A A B . n B 2 7 A 7 6209 6209 A A B . n B 2 8 U 8 6210 6210 U U B . n B 2 9 U 9 6211 6211 U U B . n B 2 10 U 10 6212 6212 U U B . n B 2 11 A 11 6213 6213 A A B . n B 2 12 C 12 6214 6214 C C B . n B 2 13 C 13 6215 6215 C C B . n B 2 14 U 14 6216 6216 U U B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IRI 1 1 1 IRI IRI A . D 3 IRI 1 2 2 IRI IRI A . E 3 IRI 1 3 3 IRI IRI A . F 4 PO4 1 6217 6217 PO4 PO4 B . G 5 HOH 1 6203 1 HOH HOH A . G 5 HOH 2 6204 2 HOH HOH A . G 5 HOH 3 6205 3 HOH HOH A . G 5 HOH 4 6206 4 HOH HOH A . G 5 HOH 5 6207 5 HOH HOH A . G 5 HOH 6 6208 6 HOH HOH A . G 5 HOH 7 6209 7 HOH HOH A . G 5 HOH 8 6210 8 HOH HOH A . G 5 HOH 9 6211 9 HOH HOH A . G 5 HOH 10 6212 12 HOH HOH A . G 5 HOH 11 6213 13 HOH HOH A . G 5 HOH 12 6214 14 HOH HOH A . G 5 HOH 13 6215 15 HOH HOH A . G 5 HOH 14 6216 17 HOH HOH A . G 5 HOH 15 6217 19 HOH HOH A . G 5 HOH 16 6218 24 HOH HOH A . G 5 HOH 17 6219 25 HOH HOH A . G 5 HOH 18 6220 27 HOH HOH A . G 5 HOH 19 6221 30 HOH HOH A . G 5 HOH 20 6222 31 HOH HOH A . G 5 HOH 21 6223 33 HOH HOH A . G 5 HOH 22 6224 35 HOH HOH A . G 5 HOH 23 6225 36 HOH HOH A . G 5 HOH 24 6226 37 HOH HOH A . G 5 HOH 25 6227 38 HOH HOH A . G 5 HOH 26 6228 39 HOH HOH A . G 5 HOH 27 6229 40 HOH HOH A . G 5 HOH 28 6230 41 HOH HOH A . G 5 HOH 29 6231 44 HOH HOH A . G 5 HOH 30 6232 45 HOH HOH A . G 5 HOH 31 6233 47 HOH HOH A . G 5 HOH 32 6234 48 HOH HOH A . G 5 HOH 33 6235 49 HOH HOH A . G 5 HOH 34 6236 50 HOH HOH A . G 5 HOH 35 6237 53 HOH HOH A . G 5 HOH 36 6238 54 HOH HOH A . G 5 HOH 37 6239 55 HOH HOH A . G 5 HOH 38 6240 57 HOH HOH A . G 5 HOH 39 6241 59 HOH HOH A . G 5 HOH 40 6242 60 HOH HOH A . G 5 HOH 41 6243 62 HOH HOH A . G 5 HOH 42 6244 66 HOH HOH A . G 5 HOH 43 6245 67 HOH HOH A . G 5 HOH 44 6246 68 HOH HOH A . G 5 HOH 45 6247 69 HOH HOH A . G 5 HOH 46 6248 70 HOH HOH A . G 5 HOH 47 6249 71 HOH HOH A . G 5 HOH 48 6250 72 HOH HOH A . G 5 HOH 49 6251 75 HOH HOH A . G 5 HOH 50 6252 77 HOH HOH A . G 5 HOH 51 6253 78 HOH HOH A . G 5 HOH 52 6254 81 HOH HOH A . G 5 HOH 53 6255 82 HOH HOH A . G 5 HOH 54 6256 83 HOH HOH A . G 5 HOH 55 6257 84 HOH HOH A . G 5 HOH 56 6258 85 HOH HOH A . G 5 HOH 57 6259 89 HOH HOH A . G 5 HOH 58 6260 92 HOH HOH A . G 5 HOH 59 6261 93 HOH HOH A . G 5 HOH 60 6262 95 HOH HOH A . G 5 HOH 61 6263 96 HOH HOH A . G 5 HOH 62 6264 97 HOH HOH A . G 5 HOH 63 6265 98 HOH HOH A . G 5 HOH 64 6266 99 HOH HOH A . G 5 HOH 65 6267 100 HOH HOH A . G 5 HOH 66 6268 102 HOH HOH A . G 5 HOH 67 6269 104 HOH HOH A . G 5 HOH 68 6270 105 HOH HOH A . G 5 HOH 69 6271 106 HOH HOH A . G 5 HOH 70 6272 109 HOH HOH A . G 5 HOH 71 6273 110 HOH HOH A . G 5 HOH 72 6274 111 HOH HOH A . G 5 HOH 73 6275 113 HOH HOH A . G 5 HOH 74 6276 114 HOH HOH A . G 5 HOH 75 6277 118 HOH HOH A . G 5 HOH 76 6278 120 HOH HOH A . G 5 HOH 77 6279 122 HOH HOH A . G 5 HOH 78 6280 123 HOH HOH A . G 5 HOH 79 6281 127 HOH HOH A . G 5 HOH 80 6282 129 HOH HOH A . G 5 HOH 81 6283 133 HOH HOH A . G 5 HOH 82 6284 139 HOH HOH A . G 5 HOH 83 6285 141 HOH HOH A . G 5 HOH 84 6286 142 HOH HOH A . G 5 HOH 85 6287 143 HOH HOH A . G 5 HOH 86 6288 144 HOH HOH A . G 5 HOH 87 6289 145 HOH HOH A . G 5 HOH 88 6290 146 HOH HOH A . G 5 HOH 89 6291 28 HOH HOH A . G 5 HOH 90 6292 121 HOH HOH A . H 5 HOH 1 6223 32 HOH HOH B . H 5 HOH 2 6224 10 HOH HOH B . H 5 HOH 3 6225 11 HOH HOH B . H 5 HOH 4 6226 16 HOH HOH B . H 5 HOH 5 6227 18 HOH HOH B . H 5 HOH 6 6228 20 HOH HOH B . H 5 HOH 7 6229 21 HOH HOH B . H 5 HOH 8 6230 22 HOH HOH B . H 5 HOH 9 6231 23 HOH HOH B . H 5 HOH 10 6232 26 HOH HOH B . H 5 HOH 11 6233 29 HOH HOH B . H 5 HOH 12 6234 34 HOH HOH B . H 5 HOH 13 6235 42 HOH HOH B . H 5 HOH 14 6236 43 HOH HOH B . H 5 HOH 15 6237 46 HOH HOH B . H 5 HOH 16 6238 51 HOH HOH B . H 5 HOH 17 6239 52 HOH HOH B . H 5 HOH 18 6240 56 HOH HOH B . H 5 HOH 19 6241 58 HOH HOH B . H 5 HOH 20 6242 61 HOH HOH B . H 5 HOH 21 6243 63 HOH HOH B . H 5 HOH 22 6244 64 HOH HOH B . H 5 HOH 23 6245 65 HOH HOH B . H 5 HOH 24 6246 73 HOH HOH B . H 5 HOH 25 6247 74 HOH HOH B . H 5 HOH 26 6248 76 HOH HOH B . H 5 HOH 27 6249 79 HOH HOH B . H 5 HOH 28 6250 80 HOH HOH B . H 5 HOH 29 6251 86 HOH HOH B . H 5 HOH 30 6252 87 HOH HOH B . H 5 HOH 31 6253 88 HOH HOH B . H 5 HOH 32 6254 90 HOH HOH B . H 5 HOH 33 6255 91 HOH HOH B . H 5 HOH 34 6256 94 HOH HOH B . H 5 HOH 35 6257 101 HOH HOH B . H 5 HOH 36 6258 103 HOH HOH B . H 5 HOH 37 6259 107 HOH HOH B . H 5 HOH 38 6260 108 HOH HOH B . H 5 HOH 39 6261 112 HOH HOH B . H 5 HOH 40 6262 115 HOH HOH B . H 5 HOH 41 6263 116 HOH HOH B . H 5 HOH 42 6264 117 HOH HOH B . H 5 HOH 43 6265 119 HOH HOH B . H 5 HOH 44 6266 124 HOH HOH B . H 5 HOH 45 6267 125 HOH HOH B . H 5 HOH 46 6268 126 HOH HOH B . H 5 HOH 47 6269 128 HOH HOH B . H 5 HOH 48 6270 130 HOH HOH B . H 5 HOH 49 6271 131 HOH HOH B . H 5 HOH 50 6272 132 HOH HOH B . H 5 HOH 51 6273 134 HOH HOH B . H 5 HOH 52 6274 135 HOH HOH B . H 5 HOH 53 6275 136 HOH HOH B . H 5 HOH 54 6276 137 HOH HOH B . H 5 HOH 55 6277 138 HOH HOH B . H 5 HOH 56 6278 140 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHENIX 'model building' . ? 2 CNS refinement 1.1 ? 3 ELVES 'data reduction' . ? 4 MOSFLM 'data reduction' . ? 5 CCP4 'data scaling' . ? 6 PHENIX phasing . ? 7 # _cell.entry_id 3B31 _cell.length_a 58.724 _cell.length_b 58.724 _cell.length_c 98.989 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B31 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3B31 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.10 _exptl_crystal.density_percent_sol 60.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '1.4 M lithium sulfate, 40 mM magnesium acetate, 50 mM HEPES-NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'lithium sulfate' ? ? ? 1 2 1 'magnesium acetate' ? ? ? 1 3 1 HEPES-NaOH ? ? ? 1 4 2 'lithium sulfate' ? ? ? 1 5 2 'magnesium acetate' ? ? ? 1 6 2 HEPES-NaOH ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 ? ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS IV++' ? ? 2 CCD 'ADSC QUANTUM 315' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 1.1055 1.0 3 1.1053 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 'ROTATING ANODE' RIGAKU ? ? ? 1.5418 2 SYNCHROTRON 'ALS BEAMLINE 12.3.1' ALS 12.3.1 ? '1.1055, 1.1053' # _reflns.entry_id 3B31 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 23.2 _reflns.number_all 7247 _reflns.number_obs 7225 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value 0.090 _reflns.pdbx_netI_over_sigmaI 27.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 31.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 18.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 696 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3B31 _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 23.2 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all 7247 _refine.ls_number_reflns_obs 7225 _refine.ls_number_reflns_R_free 774 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2393 _refine.ls_R_factor_R_free 0.2686 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -2.917 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] -2.917 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] 5.834 _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 913 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 1084 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 23.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .0053 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.35 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 3B31 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3B31 _struct.title 'Crystal structure of domain III of the Cricket Paralysis Virus IRES RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B31 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'IRES, RNA structure, translation initiation, tRNA anticodon, hybrid state, tRNA mimicry, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 3B31 1 GGUUAUUCAGAUUAGGUAGUCGAAUGACC 1 3B31 ? 2 PDB 3B31 2 UAAGAAAUUUACCU 1 3B31 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3B31 A 1 ? 29 ? 3B31 6174 ? 6202 ? 6174 6202 2 2 3B31 B 1 ? 14 ? 3B31 6203 ? 6216 ? 6203 6216 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2120 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B U 14 "O3'" ? ? ? 1_555 F PO4 . P ? ? B U 6216 B PO4 6217 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 6174 A C 6202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 6174 A C 6202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 6174 A C 6202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 28 O2 ? ? A G 6175 A C 6201 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 27 N1 ? ? A U 6176 A A 6200 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 6176 A A 6200 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 26 O6 ? ? A U 6177 A G 6199 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 26 N1 ? ? A U 6177 A G 6199 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 25 N3 ? ? A A 6178 A U 6198 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 25 O4 ? ? A A 6178 A U 6198 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 6179 A A 6197 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 6179 A A 6197 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 6180 A A 6196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 6180 A A 6196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 6181 A G 6195 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 6181 A G 6195 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 6181 A G 6195 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 6183 A C 6194 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 6183 A C 6194 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 6183 A C 6194 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 19 O6 ? ? A A 6184 A G 6192 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 6184 A U 6193 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 6184 A U 6193 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 14 N3 ? ? A A 6187 B U 6216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 14 O4 ? ? A A 6187 B U 6216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 6188 B C 6215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 6188 B C 6215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 6188 B C 6215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 6189 B C 6214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 6189 B C 6214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 6189 B C 6214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 17 N3 ? ? ? 1_555 B A 11 N1 ? ? A U 6190 B A 6213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 17 O4 ? ? ? 1_555 B A 11 N6 ? ? A U 6190 B A 6213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 18 N1 ? ? ? 1_555 B U 10 N3 ? ? A A 6191 B U 6212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 18 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 6191 B U 6212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 7 N3 ? ? A G 6192 B A 6209 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B PO4 6217 ? 3 'BINDING SITE FOR RESIDUE PO4 B 6217' AC2 Software A IRI 1 ? 9 'BINDING SITE FOR RESIDUE IRI A 1' AC3 Software A IRI 2 ? 10 'BINDING SITE FOR RESIDUE IRI A 2' AC4 Software A IRI 3 ? 10 'BINDING SITE FOR RESIDUE IRI A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 U B 14 ? U B 6216 . ? 1_555 ? 2 AC1 3 HOH H . ? HOH B 6236 . ? 1_555 ? 3 AC1 3 HOH H . ? HOH B 6252 . ? 1_555 ? 4 AC2 9 G A 2 ? G A 6175 . ? 1_555 ? 5 AC2 9 U A 3 ? U A 6176 . ? 1_555 ? 6 AC2 9 U A 4 ? U A 6177 . ? 1_555 ? 7 AC2 9 A A 24 ? A A 6197 . ? 1_555 ? 8 AC2 9 U A 25 ? U A 6198 . ? 1_555 ? 9 AC2 9 G A 26 ? G A 6199 . ? 1_555 ? 10 AC2 9 A A 27 ? A A 6200 . ? 1_555 ? 11 AC2 9 HOH G . ? HOH A 6275 . ? 1_555 ? 12 AC2 9 HOH G . ? HOH A 6276 . ? 1_555 ? 13 AC3 10 A A 9 ? A A 6182 . ? 1_555 ? 14 AC3 10 G A 10 ? G A 6183 . ? 1_555 ? 15 AC3 10 A A 11 ? A A 6184 . ? 1_555 ? 16 AC3 10 U A 12 ? U A 6185 . ? 1_555 ? 17 AC3 10 U A 13 ? U A 6186 . ? 1_555 ? 18 AC3 10 G A 16 ? G A 6189 . ? 1_555 ? 19 AC3 10 HOH G . ? HOH A 6211 . ? 1_555 ? 20 AC3 10 HOH G . ? HOH A 6255 . ? 1_555 ? 21 AC3 10 HOH G . ? HOH A 6256 . ? 1_555 ? 22 AC3 10 HOH G . ? HOH A 6257 . ? 1_555 ? 23 AC4 10 C A 8 ? C A 6181 . ? 1_555 ? 24 AC4 10 G A 10 ? G A 6183 . ? 1_555 ? 25 AC4 10 A A 11 ? A A 6184 . ? 1_555 ? 26 AC4 10 A A 18 ? A A 6191 . ? 1_555 ? 27 AC4 10 G A 19 ? G A 6192 . ? 1_555 ? 28 AC4 10 U A 20 ? U A 6193 . ? 1_555 ? 29 AC4 10 C A 21 ? C A 6194 . ? 1_555 ? 30 AC4 10 HOH G . ? HOH A 6211 . ? 1_555 ? 31 AC4 10 HOH G . ? HOH A 6253 . ? 1_555 ? 32 AC4 10 HOH G . ? HOH A 6285 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" A A 6187 ? ? "C5'" A A 6187 ? ? 1.140 1.420 -0.280 0.009 N 2 1 "O3'" A A 6187 ? ? P A G 6188 ? ? 1.830 1.607 0.223 0.012 Y 3 1 P B U 6203 ? ? OP3 B U 6203 ? ? 1.519 1.607 -0.088 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A C 6181 ? ? "C3'" A C 6181 ? ? "O3'" A C 6181 ? ? 126.66 113.70 12.96 1.60 N 2 1 "O5'" A A 6187 ? ? "C5'" A A 6187 ? ? "C4'" A A 6187 ? ? 130.14 111.70 18.44 1.90 N 3 1 "C2'" A A 6187 ? ? "C3'" A A 6187 ? ? "O3'" A A 6187 ? ? 126.62 113.70 12.92 1.60 N 4 1 N9 A A 6187 ? ? "C1'" A A 6187 ? ? "C2'" A A 6187 ? ? 124.73 114.00 10.73 1.30 N 5 1 "O4'" A A 6187 ? ? "C1'" A A 6187 ? ? N9 A A 6187 ? ? 95.32 108.20 -12.88 0.80 N 6 1 "C3'" A A 6187 ? ? "O3'" A A 6187 ? ? P A G 6188 ? ? 89.94 119.70 -29.76 1.20 Y 7 1 "C2'" B U 6210 ? ? "C3'" B U 6210 ? ? "O3'" B U 6210 ? ? 126.97 113.70 13.27 1.60 N 8 1 "C2'" B U 6211 ? ? "C3'" B U 6211 ? ? "O3'" B U 6211 ? ? 128.33 113.70 14.63 1.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 6180 ? ? 0.063 'SIDE CHAIN' 2 1 A A 6187 ? ? 0.088 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 A _pdbx_validate_polymer_linkage.auth_seq_id_1 6187 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 G _pdbx_validate_polymer_linkage.auth_seq_id_2 6188 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.83 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 IRI IR IR N N 114 IRI N1 N N N 115 IRI N2 N N N 116 IRI N3 N N N 117 IRI N4 N N N 118 IRI N5 N N N 119 IRI N6 N N N 120 IRI HN11 H N N 121 IRI HN12 H N N 122 IRI HN13 H N N 123 IRI HN21 H N N 124 IRI HN22 H N N 125 IRI HN23 H N N 126 IRI HN31 H N N 127 IRI HN32 H N N 128 IRI HN33 H N N 129 IRI HN41 H N N 130 IRI HN42 H N N 131 IRI HN43 H N N 132 IRI HN51 H N N 133 IRI HN52 H N N 134 IRI HN53 H N N 135 IRI HN61 H N N 136 IRI HN62 H N N 137 IRI HN63 H N N 138 PO4 P P N N 139 PO4 O1 O N N 140 PO4 O2 O N N 141 PO4 O3 O N N 142 PO4 O4 O N N 143 U OP3 O N N 144 U P P N N 145 U OP1 O N N 146 U OP2 O N N 147 U "O5'" O N N 148 U "C5'" C N N 149 U "C4'" C N R 150 U "O4'" O N N 151 U "C3'" C N S 152 U "O3'" O N N 153 U "C2'" C N R 154 U "O2'" O N N 155 U "C1'" C N R 156 U N1 N N N 157 U C2 C N N 158 U O2 O N N 159 U N3 N N N 160 U C4 C N N 161 U O4 O N N 162 U C5 C N N 163 U C6 C N N 164 U HOP3 H N N 165 U HOP2 H N N 166 U "H5'" H N N 167 U "H5''" H N N 168 U "H4'" H N N 169 U "H3'" H N N 170 U "HO3'" H N N 171 U "H2'" H N N 172 U "HO2'" H N N 173 U "H1'" H N N 174 U H3 H N N 175 U H5 H N N 176 U H6 H N N 177 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 IRI IR N1 sing N N 118 IRI IR N2 sing N N 119 IRI IR N3 sing N N 120 IRI IR N4 sing N N 121 IRI IR N5 sing N N 122 IRI IR N6 sing N N 123 IRI N1 HN11 sing N N 124 IRI N1 HN12 sing N N 125 IRI N1 HN13 sing N N 126 IRI N2 HN21 sing N N 127 IRI N2 HN22 sing N N 128 IRI N2 HN23 sing N N 129 IRI N3 HN31 sing N N 130 IRI N3 HN32 sing N N 131 IRI N3 HN33 sing N N 132 IRI N4 HN41 sing N N 133 IRI N4 HN42 sing N N 134 IRI N4 HN43 sing N N 135 IRI N5 HN51 sing N N 136 IRI N5 HN52 sing N N 137 IRI N5 HN53 sing N N 138 IRI N6 HN61 sing N N 139 IRI N6 HN62 sing N N 140 IRI N6 HN63 sing N N 141 PO4 P O1 doub N N 142 PO4 P O2 sing N N 143 PO4 P O3 sing N N 144 PO4 P O4 sing N N 145 U OP3 P sing N N 146 U OP3 HOP3 sing N N 147 U P OP1 doub N N 148 U P OP2 sing N N 149 U P "O5'" sing N N 150 U OP2 HOP2 sing N N 151 U "O5'" "C5'" sing N N 152 U "C5'" "C4'" sing N N 153 U "C5'" "H5'" sing N N 154 U "C5'" "H5''" sing N N 155 U "C4'" "O4'" sing N N 156 U "C4'" "C3'" sing N N 157 U "C4'" "H4'" sing N N 158 U "O4'" "C1'" sing N N 159 U "C3'" "O3'" sing N N 160 U "C3'" "C2'" sing N N 161 U "C3'" "H3'" sing N N 162 U "O3'" "HO3'" sing N N 163 U "C2'" "O2'" sing N N 164 U "C2'" "C1'" sing N N 165 U "C2'" "H2'" sing N N 166 U "O2'" "HO2'" sing N N 167 U "C1'" N1 sing N N 168 U "C1'" "H1'" sing N N 169 U N1 C2 sing N N 170 U N1 C6 sing N N 171 U C2 O2 doub N N 172 U C2 N3 sing N N 173 U N3 C4 sing N N 174 U N3 H3 sing N N 175 U C4 O4 doub N N 176 U C4 C5 sing N N 177 U C5 C6 doub N N 178 U C5 H5 sing N N 179 U C6 H6 sing N N 180 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3B31 'double helix' 3B31 'a-form double helix' 3B31 'bulge loop' 3B31 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 29 1_555 -0.485 -0.174 0.379 5.242 -4.352 3.653 1 A_G6174:C6202_A A 6174 ? A 6202 ? 19 1 1 A G 2 1_555 A C 28 1_555 -1.072 -0.024 0.289 -2.603 -17.672 11.676 2 A_G6175:C6201_A A 6175 ? A 6201 ? ? 1 1 A U 3 1_555 A A 27 1_555 -0.577 -0.294 0.335 -8.619 -17.284 2.688 3 A_U6176:A6200_A A 6176 ? A 6200 ? 20 1 1 A U 4 1_555 A G 26 1_555 1.922 -0.637 0.514 -6.442 -11.029 0.035 4 A_U6177:G6199_A A 6177 ? A 6199 ? 28 1 1 A A 5 1_555 A U 25 1_555 -0.419 -0.327 0.450 5.803 -11.769 1.406 5 A_A6178:U6198_A A 6178 ? A 6198 ? 20 1 1 A U 6 1_555 A A 24 1_555 -0.281 -0.128 0.192 -2.823 -14.102 0.884 6 A_U6179:A6197_A A 6179 ? A 6197 ? 20 1 1 A U 7 1_555 A A 23 1_555 0.422 -0.136 0.203 -4.703 -15.962 7.816 7 A_U6180:A6196_A A 6180 ? A 6196 ? 20 1 1 A C 8 1_555 A G 22 1_555 0.186 0.095 -0.075 9.502 -2.752 -0.190 8 A_C6181:G6195_A A 6181 ? A 6195 ? 19 1 1 A G 10 1_555 A C 21 1_555 -0.303 -0.333 0.265 -6.950 -18.449 0.113 9 A_G6183:C6194_A A 6183 ? A 6194 ? 19 1 1 A A 11 1_555 A U 20 1_555 -0.182 0.194 0.477 -26.907 -25.202 -3.269 10 A_A6184:U6193_A A 6184 ? A 6193 ? 20 1 1 B A 7 1_555 A G 19 1_555 2.145 7.151 -1.426 45.091 5.545 143.397 11 B_A6209:G6192_A B 6209 ? A 6192 ? ? 6 1 B U 10 1_555 A A 18 1_555 0.024 -0.172 0.153 -6.756 -7.083 -2.319 12 B_U6212:A6191_A B 6212 ? A 6191 ? 20 1 1 B A 11 1_555 A U 17 1_555 0.151 -0.118 0.129 -0.965 -9.837 2.734 13 B_A6213:U6190_A B 6213 ? A 6190 ? 20 1 1 B C 12 1_555 A G 16 1_555 0.414 -0.207 0.286 -0.627 -11.114 2.806 14 B_C6214:G6189_A B 6214 ? A 6189 ? 19 1 1 B C 13 1_555 A G 15 1_555 0.402 -0.260 0.242 -1.424 -12.365 1.004 15 B_C6215:G6188_A B 6215 ? A 6188 ? 19 1 1 B U 14 1_555 A A 14 1_555 0.283 0.102 -0.107 5.838 -4.576 -0.070 16 B_U6216:A6187_A B 6216 ? A 6187 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 29 1_555 A G 2 1_555 A C 28 1_555 0.816 -2.324 3.375 1.186 2.692 29.607 -5.094 -1.339 3.186 5.251 -2.313 29.750 1 AA_G6174G6175:C6201C6202_AA A 6174 ? A 6202 ? A 6175 ? A 6201 ? 1 A G 2 1_555 A C 28 1_555 A U 3 1_555 A A 27 1_555 -0.861 -1.472 3.311 -2.035 8.255 35.059 -3.515 1.111 2.944 13.460 3.319 36.044 2 AA_G6175U6176:A6200C6201_AA A 6175 ? A 6201 ? A 6176 ? A 6200 ? 1 A U 3 1_555 A A 27 1_555 A U 4 1_555 A G 26 1_555 -0.169 -1.241 3.181 -1.607 4.820 39.023 -2.387 0.070 3.017 7.178 2.393 39.340 3 AA_U6176U6177:G6199A6200_AA A 6176 ? A 6200 ? A 6177 ? A 6199 ? 1 A U 4 1_555 A G 26 1_555 A A 5 1_555 A U 25 1_555 -0.230 -1.580 2.547 1.176 10.662 27.540 -4.667 0.624 1.811 21.396 -2.360 29.518 4 AA_U6177A6178:U6198G6199_AA A 6177 ? A 6199 ? A 6178 ? A 6198 ? 1 A A 5 1_555 A U 25 1_555 A U 6 1_555 A A 24 1_555 0.054 -1.249 3.537 1.890 11.555 29.433 -4.460 0.256 2.854 21.692 -3.549 31.628 5 AA_A6178U6179:A6197U6198_AA A 6178 ? A 6198 ? A 6179 ? A 6197 ? 1 A U 6 1_555 A A 24 1_555 A U 7 1_555 A A 23 1_555 0.213 -0.798 3.282 0.332 7.047 37.713 -2.081 -0.283 3.091 10.787 -0.509 38.344 6 AA_U6179U6180:A6196A6197_AA A 6179 ? A 6197 ? A 6180 ? A 6196 ? 1 A U 7 1_555 A A 23 1_555 A C 8 1_555 A G 22 1_555 -0.313 -0.646 3.026 3.508 12.217 30.529 -2.974 1.078 2.538 22.041 -6.328 33.011 7 AA_U6180C6181:G6195A6196_AA A 6180 ? A 6196 ? A 6181 ? A 6195 ? 1 A C 8 1_555 A G 22 1_555 A G 10 1_555 A C 21 1_555 -1.197 -1.711 3.450 -5.662 7.557 41.170 -3.182 1.060 3.230 10.580 7.926 42.193 8 AA_C6181G6183:C6194G6195_AA A 6181 ? A 6195 ? A 6183 ? A 6194 ? 1 A G 10 1_555 A C 21 1_555 A A 11 1_555 A U 20 1_555 -0.511 -1.884 3.694 1.852 2.759 37.922 -3.275 1.043 3.526 4.235 -2.843 38.062 9 AA_G6183A6184:U6193C6194_AA A 6183 ? A 6194 ? A 6184 ? A 6193 ? 1 A A 11 1_555 A U 20 1_555 B A 7 1_555 A G 19 1_555 -2.462 -2.433 -5.263 -151.753 30.519 42.399 -0.873 3.095 -0.147 16.833 83.701 156.523 10 AB_A6184A6209:G6192U6193_AA A 6184 ? A 6193 ? B 6209 ? A 6192 ? 1 B A 7 1_555 A G 19 1_555 B U 10 1_555 A A 18 1_555 -2.711 -2.539 2.651 83.543 -130.676 119.157 -0.680 1.745 2.638 -66.746 -42.672 167.465 11 BB_A6209U6212:A6191G6192_AA B 6209 ? A 6192 ? B 6212 ? A 6191 ? 1 B U 10 1_555 A A 18 1_555 B A 11 1_555 A U 17 1_555 -0.390 -1.501 2.923 1.899 10.437 32.929 -3.855 0.899 2.328 17.845 -3.246 34.550 12 BB_U6212A6213:U6190A6191_AA B 6212 ? A 6191 ? B 6213 ? A 6190 ? 1 B A 11 1_555 A U 17 1_555 B C 12 1_555 A G 16 1_555 0.238 -0.976 3.154 -2.181 9.950 33.210 -3.043 -0.707 2.737 16.920 3.710 34.695 13 BB_A6213C6214:G6189U6190_AA B 6213 ? A 6190 ? B 6214 ? A 6189 ? 1 B C 12 1_555 A G 16 1_555 B C 13 1_555 A G 15 1_555 0.325 -1.755 3.159 3.710 6.528 31.867 -4.153 0.012 2.774 11.687 -6.643 32.718 14 BB_C6214C6215:G6188G6189_AA B 6214 ? A 6189 ? B 6215 ? A 6188 ? 1 B C 13 1_555 A G 15 1_555 B U 14 1_555 A A 14 1_555 -0.108 -1.279 3.063 3.587 4.240 34.660 -2.701 0.670 2.867 7.061 -5.973 35.089 15 BB_C6215U6216:A6187G6188_AA B 6215 ? A 6188 ? B 6216 ? A 6187 ? # _atom_sites.entry_id 3B31 _atom_sites.fract_transf_matrix[1][1] 0.017029 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017029 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010102 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C IR N O P # loop_