data_3B33 # _entry.id 3B33 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B33 RCSB RCSB045017 WWPDB D_1000045017 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC91440.4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3B33 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Sather, A.' 2 'Abdullah, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'X-ray structure of PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Sather, A.' 2 primary 'Abdullah, J.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 81.115 _cell.length_b 81.115 _cell.length_c 67.467 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3B33 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 3B33 _symmetry.Int_Tables_number 182 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sensor protein' 12850.979 1 2.7.13.3 ? 'PAS domain: Residues 1-112' ? 2 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)DTSLPSAILNN(MSE)VTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLTQPLQS GQSITDSDVTFVVDGRPL(MSE)LEVTVSPITWQRQL(MSE)LLVE(MSE)RKID ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMDTSLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLTQPLQSGQSITDSD VTFVVDGRPLMLEVTVSPITWQRQLMLLVEMRKID ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC91440.4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ASP n 1 6 THR n 1 7 SER n 1 8 LEU n 1 9 PRO n 1 10 SER n 1 11 ALA n 1 12 ILE n 1 13 LEU n 1 14 ASN n 1 15 ASN n 1 16 MSE n 1 17 VAL n 1 18 THR n 1 19 ALA n 1 20 THR n 1 21 LEU n 1 22 ILE n 1 23 LEU n 1 24 ASP n 1 25 ASP n 1 26 GLY n 1 27 LEU n 1 28 ALA n 1 29 ILE n 1 30 ARG n 1 31 TYR n 1 32 ALA n 1 33 ASN n 1 34 PRO n 1 35 ALA n 1 36 ALA n 1 37 GLU n 1 38 LEU n 1 39 LEU n 1 40 PHE n 1 41 SER n 1 42 GLN n 1 43 SER n 1 44 ALA n 1 45 LYS n 1 46 ARG n 1 47 ILE n 1 48 VAL n 1 49 GLU n 1 50 GLN n 1 51 SER n 1 52 LEU n 1 53 SER n 1 54 GLN n 1 55 LEU n 1 56 ILE n 1 57 GLN n 1 58 HIS n 1 59 ALA n 1 60 SER n 1 61 LEU n 1 62 ASP n 1 63 LEU n 1 64 ALA n 1 65 LEU n 1 66 LEU n 1 67 THR n 1 68 GLN n 1 69 PRO n 1 70 LEU n 1 71 GLN n 1 72 SER n 1 73 GLY n 1 74 GLN n 1 75 SER n 1 76 ILE n 1 77 THR n 1 78 ASP n 1 79 SER n 1 80 ASP n 1 81 VAL n 1 82 THR n 1 83 PHE n 1 84 VAL n 1 85 VAL n 1 86 ASP n 1 87 GLY n 1 88 ARG n 1 89 PRO n 1 90 LEU n 1 91 MSE n 1 92 LEU n 1 93 GLU n 1 94 VAL n 1 95 THR n 1 96 VAL n 1 97 SER n 1 98 PRO n 1 99 ILE n 1 100 THR n 1 101 TRP n 1 102 GLN n 1 103 ARG n 1 104 GLN n 1 105 LEU n 1 106 MSE n 1 107 LEU n 1 108 LEU n 1 109 VAL n 1 110 GLU n 1 111 MSE n 1 112 ARG n 1 113 LYS n 1 114 ILE n 1 115 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Vibrio _entity_src_gen.pdbx_gene_src_gene VP0119 _entity_src_gen.gene_src_species 'Vibrio parahaemolyticus' _entity_src_gen.gene_src_strain 'RIMD 2210633 / Serotype O3:K6' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus RIMD 2210633' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223926 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q87TF0_VIBPA _struct_ref.pdbx_db_accession Q87TF0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDTSLPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLTQPLQSGQSITDSDVTF VVDGRPLMLEVTVSPITWQRQLMLLVEMRKID ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B33 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87TF0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 112 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B33 SER A 1 ? UNP Q87TF0 ? ? 'EXPRESSION TAG' -2 1 1 3B33 ASN A 2 ? UNP Q87TF0 ? ? 'EXPRESSION TAG' -1 2 1 3B33 ALA A 3 ? UNP Q87TF0 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3B33 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '0.1 M Sodium acetate, 3 M Sodium chloride, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-10-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.97920 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3B33 _reflns.d_resolution_high 1.830 _reflns.d_resolution_low 35.12 _reflns.number_obs 11960 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 11.300 _reflns.pdbx_chi_squared 1.558 _reflns.pdbx_redundancy 18.300 _reflns.percent_possible_obs 98.800 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 11960 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 40.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.83 _reflns_shell.d_res_low 1.88 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.610 _reflns_shell.meanI_over_sigI_obs 2.18 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.787 _reflns_shell.pdbx_redundancy 6.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 872 _reflns_shell.percent_possible_all 88.80 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3B33 _refine.ls_d_res_high 1.830 _refine.ls_d_res_low 35.12 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.770 _refine.ls_number_reflns_obs 11938 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.1843 _refine.ls_R_factor_R_work 0.1837 _refine.ls_R_factor_R_free 0.1958 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 566 _refine.B_iso_mean 33.354 _refine.aniso_B[1][1] 0.070 _refine.aniso_B[2][2] 0.070 _refine.aniso_B[3][3] -0.100 _refine.aniso_B[1][2] 0.030 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.969 _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.107 _refine.overall_SU_ML 0.086 _refine.overall_SU_B 5.830 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 11938 _refine.ls_R_factor_all 0.1843 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 838 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 907 _refine_hist.d_res_high 1.830 _refine_hist.d_res_low 35.12 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 936 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1300 1.780 2.003 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 135 6.496 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36 44.231 25.278 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 182 17.216 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 19.435 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 172 0.136 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 680 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 421 0.224 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 663 0.306 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 65 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 62 0.290 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.101 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 608 1.194 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 985 1.974 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 357 2.279 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 300 3.449 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.83 _refine_ls_shell.d_res_low 1.88 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 87.660 _refine_ls_shell.number_reflns_R_work 727 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 767 _refine_ls_shell.number_reflns_obs 767 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B33 _struct.title 'Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus' _struct.pdbx_descriptor 'Sensor protein (E.C.2.7.13.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B33 _struct_keywords.text ;structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Kinase, Phosphorylation, Transferase ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'Authors state that the biological unit of this protein is unknown.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? MSE A 16 ? SER A 4 MSE A 13 1 ? 10 HELX_P HELX_P2 2 ASN A 33 ? PHE A 40 ? ASN A 30 PHE A 37 1 ? 8 HELX_P HELX_P3 3 SER A 43 ? VAL A 48 ? SER A 40 VAL A 45 1 ? 6 HELX_P HELX_P4 4 SER A 51 ? ILE A 56 ? SER A 48 ILE A 53 1 ? 6 HELX_P HELX_P5 5 LEU A 63 ? GLY A 73 ? LEU A 60 GLY A 70 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 15 C ? ? ? 1_555 A MSE 16 N ? ? A ASN 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.313 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A VAL 17 N ? ? A MSE 13 A VAL 14 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A LEU 90 C ? ? ? 1_555 A MSE 91 N ? ? A LEU 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 91 C ? ? ? 1_555 A LEU 92 N ? ? A MSE 88 A LEU 89 1_555 ? ? ? ? ? ? ? 1.339 ? covale5 covale ? ? A LEU 105 C ? ? ? 1_555 A MSE 106 N ? ? A LEU 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 106 C ? ? ? 1_555 A LEU 107 N ? ? A MSE 103 A LEU 104 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale ? ? A GLU 110 C ? ? ? 1_555 A MSE 111 N ? ? A GLU 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.337 ? covale8 covale ? ? A MSE 111 C ? ? ? 1_555 A ARG 112 N ? ? A MSE 108 A ARG 109 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 29 ? ALA A 32 ? ILE A 26 ALA A 29 A 2 ALA A 19 ? LEU A 23 ? ALA A 16 LEU A 20 A 3 GLN A 104 ? LYS A 113 ? GLN A 101 LYS A 110 A 4 ARG A 88 ? TRP A 101 ? ARG A 85 TRP A 98 A 5 ILE A 76 ? VAL A 85 ? ILE A 73 VAL A 82 A 6 HIS A 58 ? SER A 60 ? HIS A 55 SER A 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 30 ? O ARG A 27 N ILE A 22 ? N ILE A 19 A 2 3 N LEU A 21 ? N LEU A 18 O VAL A 109 ? O VAL A 106 A 3 4 O LEU A 108 ? O LEU A 105 N SER A 97 ? N SER A 94 A 4 5 O LEU A 90 ? O LEU A 87 N PHE A 83 ? N PHE A 80 A 5 6 O VAL A 84 ? O VAL A 81 N HIS A 58 ? N HIS A 55 # _atom_sites.entry_id 3B33 _atom_sites.fract_transf_matrix[1][1] 0.012328 _atom_sites.fract_transf_matrix[1][2] 0.007118 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014235 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014822 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ASP 5 2 ? ? ? A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 LEU 8 5 5 LEU LEU A . n A 1 9 PRO 9 6 6 PRO PRO A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 ASN 14 11 11 ASN ASN A . n A 1 15 ASN 15 12 12 ASN ASN A . n A 1 16 MSE 16 13 13 MSE MSE A . n A 1 17 VAL 17 14 14 VAL VAL A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 THR 20 17 17 THR THR A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ILE 22 19 19 ILE ILE A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 GLY 26 23 23 GLY GLY A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 ILE 29 26 26 ILE ILE A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 TYR 31 28 28 TYR TYR A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 ASN 33 30 30 ASN ASN A . n A 1 34 PRO 34 31 31 PRO PRO A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 ALA 36 33 33 ALA ALA A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 PHE 40 37 37 PHE PHE A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 GLN 42 39 39 GLN GLN A . n A 1 43 SER 43 40 40 SER SER A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 ARG 46 43 43 ARG ARG A . n A 1 47 ILE 47 44 44 ILE ILE A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 SER 53 50 50 SER SER A . n A 1 54 GLN 54 51 51 GLN GLN A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 ILE 56 53 53 ILE ILE A . n A 1 57 GLN 57 54 54 GLN GLN A . n A 1 58 HIS 58 55 55 HIS HIS A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 THR 67 64 64 THR THR A . n A 1 68 GLN 68 65 65 GLN GLN A . n A 1 69 PRO 69 66 66 PRO PRO A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 GLN 71 68 68 GLN GLN A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 GLY 73 70 70 GLY GLY A . n A 1 74 GLN 74 71 71 GLN GLN A . n A 1 75 SER 75 72 72 SER SER A . n A 1 76 ILE 76 73 73 ILE ILE A . n A 1 77 THR 77 74 74 THR THR A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 VAL 81 78 78 VAL VAL A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 PHE 83 80 80 PHE PHE A . n A 1 84 VAL 84 81 81 VAL VAL A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 ASP 86 83 83 ASP ASP A . n A 1 87 GLY 87 84 84 GLY GLY A . n A 1 88 ARG 88 85 85 ARG ARG A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 LEU 90 87 87 LEU LEU A . n A 1 91 MSE 91 88 88 MSE MSE A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 VAL 94 91 91 VAL VAL A . n A 1 95 THR 95 92 92 THR THR A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 SER 97 94 94 SER SER A . n A 1 98 PRO 98 95 95 PRO PRO A . n A 1 99 ILE 99 96 96 ILE ILE A . n A 1 100 THR 100 97 97 THR THR A . n A 1 101 TRP 101 98 98 TRP TRP A . n A 1 102 GLN 102 99 99 GLN GLN A . n A 1 103 ARG 103 100 100 ARG ARG A . n A 1 104 GLN 104 101 101 GLN GLN A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 MSE 106 103 103 MSE MSE A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 LEU 108 105 105 LEU LEU A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 GLU 110 107 107 GLU GLU A . n A 1 111 MSE 111 108 108 MSE MSE A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 LYS 113 110 110 LYS LYS A . n A 1 114 ILE 114 111 111 ILE ILE A . n A 1 115 ASP 115 112 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 113 1 HOH HOH A . B 2 HOH 2 114 2 HOH HOH A . B 2 HOH 3 115 3 HOH HOH A . B 2 HOH 4 116 4 HOH HOH A . B 2 HOH 5 117 5 HOH HOH A . B 2 HOH 6 118 6 HOH HOH A . B 2 HOH 7 119 7 HOH HOH A . B 2 HOH 8 120 8 HOH HOH A . B 2 HOH 9 121 9 HOH HOH A . B 2 HOH 10 122 10 HOH HOH A . B 2 HOH 11 123 11 HOH HOH A . B 2 HOH 12 124 12 HOH HOH A . B 2 HOH 13 125 13 HOH HOH A . B 2 HOH 14 126 14 HOH HOH A . B 2 HOH 15 127 15 HOH HOH A . B 2 HOH 16 128 16 HOH HOH A . B 2 HOH 17 129 17 HOH HOH A . B 2 HOH 18 130 18 HOH HOH A . B 2 HOH 19 131 19 HOH HOH A . B 2 HOH 20 132 20 HOH HOH A . B 2 HOH 21 133 21 HOH HOH A . B 2 HOH 22 134 22 HOH HOH A . B 2 HOH 23 135 23 HOH HOH A . B 2 HOH 24 136 24 HOH HOH A . B 2 HOH 25 137 25 HOH HOH A . B 2 HOH 26 138 26 HOH HOH A . B 2 HOH 27 139 27 HOH HOH A . B 2 HOH 28 140 28 HOH HOH A . B 2 HOH 29 141 29 HOH HOH A . B 2 HOH 30 142 30 HOH HOH A . B 2 HOH 31 143 31 HOH HOH A . B 2 HOH 32 144 32 HOH HOH A . B 2 HOH 33 145 33 HOH HOH A . B 2 HOH 34 146 34 HOH HOH A . B 2 HOH 35 147 35 HOH HOH A . B 2 HOH 36 148 36 HOH HOH A . B 2 HOH 37 149 37 HOH HOH A . B 2 HOH 38 150 38 HOH HOH A . B 2 HOH 39 151 39 HOH HOH A . B 2 HOH 40 152 40 HOH HOH A . B 2 HOH 41 153 41 HOH HOH A . B 2 HOH 42 154 42 HOH HOH A . B 2 HOH 43 155 43 HOH HOH A . B 2 HOH 44 156 44 HOH HOH A . B 2 HOH 45 157 45 HOH HOH A . B 2 HOH 46 158 46 HOH HOH A . B 2 HOH 47 159 47 HOH HOH A . B 2 HOH 48 160 48 HOH HOH A . B 2 HOH 49 161 49 HOH HOH A . B 2 HOH 50 162 50 HOH HOH A . B 2 HOH 51 163 51 HOH HOH A . B 2 HOH 52 164 52 HOH HOH A . B 2 HOH 53 165 53 HOH HOH A . B 2 HOH 54 166 54 HOH HOH A . B 2 HOH 55 167 55 HOH HOH A . B 2 HOH 56 168 56 HOH HOH A . B 2 HOH 57 169 57 HOH HOH A . B 2 HOH 58 170 58 HOH HOH A . B 2 HOH 59 171 59 HOH HOH A . B 2 HOH 60 172 60 HOH HOH A . B 2 HOH 61 173 61 HOH HOH A . B 2 HOH 62 174 62 HOH HOH A . B 2 HOH 63 175 63 HOH HOH A . B 2 HOH 64 176 64 HOH HOH A . B 2 HOH 65 177 65 HOH HOH A . B 2 HOH 66 178 66 HOH HOH A . B 2 HOH 67 179 67 HOH HOH A . B 2 HOH 68 180 68 HOH HOH A . B 2 HOH 69 181 69 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 13 ? MET SELENOMETHIONINE 2 A MSE 91 A MSE 88 ? MET SELENOMETHIONINE 3 A MSE 106 A MSE 103 ? MET SELENOMETHIONINE 4 A MSE 111 A MSE 108 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2150 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 115 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.0652 29.6684 6.6962 0.0644 0.0824 0.0482 0.0095 -0.0903 0.0082 0.3286 0.9307 2.3028 -0.5289 0.5247 -0.5038 -0.0316 -0.0063 0.0379 0.0615 0.0292 -0.0885 0.0527 -0.1610 0.0032 'X-RAY DIFFRACTION' 2 ? refined 8.3378 27.6890 12.9183 0.0198 0.0576 -0.1293 0.0038 0.0727 -0.0443 9.7219 30.9510 14.4818 -6.7434 -0.9129 -9.4016 -0.0153 0.5271 -0.5118 -0.6625 -0.2476 0.9285 1.1903 -1.0310 -0.0650 'X-RAY DIFFRACTION' 3 ? refined 14.9658 30.8035 19.1129 0.0718 0.0473 -0.0804 0.0755 -0.0079 -0.0442 27.9516 10.6586 18.4075 -14.9551 10.5529 0.5445 -0.8340 0.6190 0.2150 -1.4893 0.1680 -0.1747 0.3876 -1.2053 -1.4854 'X-RAY DIFFRACTION' 4 ? refined 15.9814 15.7990 18.0837 -0.0918 0.0859 -0.0280 -0.0264 -0.0633 0.1852 2.1052 3.8488 10.0338 -2.8433 0.8250 -0.8235 -0.1273 0.3737 -0.2464 -0.4913 -0.2093 0.0525 0.0655 -0.0964 -0.4429 'X-RAY DIFFRACTION' 5 ? refined 27.9666 13.8858 7.1582 -0.0995 -0.0458 0.0348 0.0760 -0.0854 0.0740 46.6972 11.3526 16.9788 7.8922 -18.9948 1.2052 0.4740 0.1248 -0.5987 -0.9681 -1.0721 -0.7442 -0.1021 0.9188 0.5521 'X-RAY DIFFRACTION' 6 ? refined 16.5457 11.3490 4.6686 0.0744 -0.0667 0.0699 -0.0492 -0.1822 0.0742 31.2322 9.5577 6.3106 11.9619 -9.3666 0.3835 0.0795 -0.1057 0.0262 0.3022 -1.3278 0.0564 -0.5708 0.9136 -0.2518 'X-RAY DIFFRACTION' 7 ? refined 7.4774 16.9391 17.2552 -0.1228 0.3431 -0.0264 0.0520 -0.0453 0.3663 9.3915 16.6983 26.0481 -2.5825 -10.9396 5.2257 0.3953 0.4366 -0.8319 -0.3940 -0.5856 1.2115 0.4615 -1.1203 -1.8430 'X-RAY DIFFRACTION' 8 ? refined 24.3036 23.1130 6.1325 -0.0095 0.0938 0.1594 -0.0531 -0.0701 0.0220 19.4758 1.6609 3.0185 1.5443 0.2393 -2.1349 0.1121 -0.1994 0.0873 -0.3921 1.4747 0.0856 0.0069 0.1318 0.3463 'X-RAY DIFFRACTION' 9 ? refined 16.9840 20.8690 6.4927 0.0397 0.0659 0.0205 -0.0232 -0.0688 0.0413 9.3785 1.7929 2.8255 1.6023 5.1071 0.6127 -0.0682 0.1073 -0.0391 -0.1676 -0.1052 -0.1093 0.0160 0.0012 -0.0859 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 6 A 36 ? A 3 A 33 'X-RAY DIFFRACTION' ? 2 2 A 37 A 41 ? A 34 A 38 'X-RAY DIFFRACTION' ? 3 3 A 42 A 51 ? A 39 A 48 'X-RAY DIFFRACTION' ? 4 4 A 52 A 64 ? A 49 A 61 'X-RAY DIFFRACTION' ? 5 5 A 65 A 74 ? A 62 A 71 'X-RAY DIFFRACTION' ? 6 6 A 75 A 80 ? A 72 A 77 'X-RAY DIFFRACTION' ? 7 7 A 81 A 90 ? A 78 A 87 'X-RAY DIFFRACTION' ? 8 8 A 91 A 104 ? A 88 A 101 'X-RAY DIFFRACTION' ? 9 9 A 105 A 114 ? A 102 A 111 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SOLVE . ? ? ? ? phasing ? ? ? 10 RESOLVE . ? ? ? ? phasing ? ? ? 11 HKL-3000 . ? ? ? ? phasing ? ? ? 12 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 120 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 176 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.91 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 46 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 46 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_665 _pdbx_validate_symm_contact.dist 1.87 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 46 ? ? 70.79 -0.32 2 1 ASP A 83 ? ? 33.60 52.66 3 1 ASP A 83 ? ? 36.35 50.21 4 1 ARG A 100 ? ? 47.42 24.53 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ASP 2 ? A ASP 5 6 1 Y 1 A ASP 112 ? A ASP 115 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #