HEADER OXIDOREDUCTASE 25-OCT-07 3B53 TITLE NI,FE-CODH-320 MV STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.99.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS Z-2901; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: COOS2, COOSII; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CLUSTER C, 4FE-4S, CYTOPLASM, IRON, IRON-SULFUR, MEMBRANE, METAL- KEYWDS 2 BINDING, NICKEL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.JEOUNG,H.DOBBEK REVDAT 5 21-FEB-24 3B53 1 REMARK LINK REVDAT 4 22-APR-20 3B53 1 REMARK SEQADV LINK ATOM REVDAT 3 08-SEP-09 3B53 1 HET HETATM HETNAM REVDAT 2 24-FEB-09 3B53 1 VERSN REVDAT 1 11-DEC-07 3B53 0 JRNL AUTH J.H.JEOUNG,H.DOBBEK JRNL TITL CARBON DIOXIDE ACTIVATION AT THE NI,FE-CLUSTER OF ANAEROBIC JRNL TITL 2 CARBON MONOXIDE DEHYDROGENASE. JRNL REF SCIENCE V. 318 1461 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 18048691 JRNL DOI 10.1126/SCIENCE.1148481 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 78501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 884 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.753 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4879 ; 0.017 ; 0.043 REMARK 3 BOND LENGTHS OTHERS (A): 3181 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6703 ; 1.951 ; 6.730 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7888 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 5.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;37.042 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;12.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 807 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5460 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1242 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3786 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2473 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2494 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 769 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.027 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.176 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 103 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 96 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4147 ; 0.706 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1314 ; 0.143 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5164 ; 0.813 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 1.737 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1453 ; 2.363 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10 ; 2.241 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 12 ; 5.342 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, (NH4)2SO4, BIS-TRIS, SODIUM REMARK 280 DITHIONITE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.91500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.91500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.01862 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.86289 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X1756 LIES ON A SPECIAL POSITION. REMARK 375 HOH X1770 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X -19 REMARK 465 GLY X -18 REMARK 465 SER X -17 REMARK 465 SER X -16 REMARK 465 HIS X -15 REMARK 465 HIS X -14 REMARK 465 HIS X -13 REMARK 465 HIS X -12 REMARK 465 HIS X -11 REMARK 465 HIS X -10 REMARK 465 SER X -9 REMARK 465 SER X -8 REMARK 465 GLY X -7 REMARK 465 LEU X -6 REMARK 465 VAL X -5 REMARK 465 PRO X -4 REMARK 465 ARG X -3 REMARK 465 GLY X -2 REMARK 465 SER X -1 REMARK 465 HIS X 0 REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 ARG X 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 1278 O HOH X 1595 1.97 REMARK 500 OE2 GLU X 64 O HOH X 1267 1.98 REMARK 500 OG SER X 94 O HOH X 1871 2.00 REMARK 500 OE2 GLU X 368 O HOH X 1656 2.05 REMARK 500 O HOH X 1267 O HOH X 1884 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 53.38 -91.86 REMARK 500 ASP X 63 -162.21 -108.06 REMARK 500 ALA X 112 79.55 -151.35 REMARK 500 LYS X 157 -165.88 -162.50 REMARK 500 CYS X 201 -121.51 -115.74 REMARK 500 ALA X 203 44.56 -148.15 REMARK 500 THR X 242 -158.93 -153.06 REMARK 500 ASN X 245 173.72 96.51 REMARK 500 HIS X 261 -36.56 -133.25 REMARK 500 CYS X 294 -153.62 59.15 REMARK 500 CYS X 294 -153.38 59.15 REMARK 500 SER X 312 -120.17 45.14 REMARK 500 ASP X 330 -78.46 -111.99 REMARK 500 ASP X 330 -84.30 -107.74 REMARK 500 GLN X 332 129.89 78.16 REMARK 500 ALA X 405 -159.97 -142.38 REMARK 500 ASP X 454 -7.76 82.24 REMARK 500 GLU X 558 39.85 -140.84 REMARK 500 MET X 560 -58.74 -138.47 REMARK 500 SER X 598 -65.85 -143.53 REMARK 500 TYR X 607 149.91 -175.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X1288 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH X1414 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH X1416 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH X1526 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH X1609 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH X1653 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH X1670 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH X1700 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH X1835 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH X1838 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH X1854 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH X1869 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH X1882 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH X1887 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X1002 S1 106.5 REMARK 620 3 FES X1002 S2 115.0 105.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X1002 S1 118.1 REMARK 620 3 FES X1002 S2 112.5 105.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X1001 S1 117.0 REMARK 620 3 SF4 X1001 S2 109.5 104.2 REMARK 620 4 SF4 X1001 S4 111.5 105.3 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X1001 S1 119.3 REMARK 620 3 SF4 X1001 S3 100.3 104.7 REMARK 620 4 SF4 X1001 S4 119.7 105.1 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X1001 S2 107.6 REMARK 620 3 SF4 X1001 S3 117.0 104.1 REMARK 620 4 SF4 X1001 S4 114.5 107.0 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X1001 S1 117.0 REMARK 620 3 SF4 X1001 S2 114.0 104.8 REMARK 620 4 SF4 X1001 S3 109.7 105.6 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 WCC X1003 S1 101.3 REMARK 620 3 HOH X1888 O 87.2 139.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 295 SG REMARK 620 2 WCC X1003 S1 118.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 WCC X1003 S1 115.5 REMARK 620 3 WCC X1003 S2 113.0 102.9 REMARK 620 4 WCC X1003 S3 95.9 118.5 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 WCC X1003 S2 105.7 REMARK 620 3 WCC X1003 S3 110.5 112.5 REMARK 620 4 WCC X1003 S4 121.7 106.3 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 WCC X1003 S1 112.0 REMARK 620 3 WCC X1003 S2 117.5 103.5 REMARK 620 4 WCC X1003 S4 108.6 108.3 106.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 X 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 X 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES X 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WCC X 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B51 RELATED DB: PDB REMARK 900 RELATED ID: 3B52 RELATED DB: PDB DBREF 3B53 X 4 636 UNP Q9F8A8 COOS2_CARHZ 4 636 SEQADV 3B53 MET X -19 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 GLY X -18 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 SER X -17 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 SER X -16 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X -15 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X -14 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X -13 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X -12 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X -11 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X -10 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 SER X -9 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 SER X -8 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 GLY X -7 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 LEU X -6 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 VAL X -5 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 PRO X -4 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 ARG X -3 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 GLY X -2 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 SER X -1 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 HIS X 0 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 MET X 1 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 ALA X 2 UNP Q9F8A8 EXPRESSION TAG SEQADV 3B53 ARG X 3 UNP Q9F8A8 EXPRESSION TAG SEQRES 1 X 656 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 X 656 LEU VAL PRO ARG GLY SER HIS MET ALA ARG GLN ASN LEU SEQRES 3 X 656 LYS SER THR ASP ARG ALA VAL GLN GLN MET LEU ASP LYS SEQRES 4 X 656 ALA LYS ARG GLU GLY ILE GLN THR VAL TRP ASP ARG TYR SEQRES 5 X 656 GLU ALA MET LYS PRO GLN CYS GLY PHE GLY GLU THR GLY SEQRES 6 X 656 LEU CYS CYS ARG HIS CYS LEU GLN GLY PRO CYS ARG ILE SEQRES 7 X 656 ASN PRO PHE GLY ASP GLU PRO LYS VAL GLY ILE CYS GLY SEQRES 8 X 656 ALA THR ALA GLU VAL ILE VAL ALA ARG GLY LEU ASP ARG SEQRES 9 X 656 SER ILE ALA ALA GLY ALA ALA GLY HIS SER GLY HIS ALA SEQRES 10 X 656 LYS HIS LEU ALA HIS THR LEU LYS LYS ALA VAL GLN GLY SEQRES 11 X 656 LYS ALA ALA SER TYR MET ILE LYS ASP ARG THR LYS LEU SEQRES 12 X 656 HIS SER ILE ALA LYS ARG LEU GLY ILE PRO THR GLU GLY SEQRES 13 X 656 GLN LYS ASP GLU ASP ILE ALA LEU GLU VAL ALA LYS ALA SEQRES 14 X 656 ALA LEU ALA ASP PHE HIS GLU LYS ASP THR PRO VAL LEU SEQRES 15 X 656 TRP VAL THR THR VAL LEU PRO PRO SER ARG VAL LYS VAL SEQRES 16 X 656 LEU SER ALA HIS GLY LEU ILE PRO ALA GLY ILE ASP HIS SEQRES 17 X 656 GLU ILE ALA GLU ILE MET HIS ARG THR SER MET GLY CYS SEQRES 18 X 656 ASP ALA ASP ALA GLN ASN LEU LEU LEU GLY GLY LEU ARG SEQRES 19 X 656 CYS SER LEU ALA ASP LEU ALA GLY CYS TYR MET GLY THR SEQRES 20 X 656 ASP LEU ALA ASP ILE LEU PHE GLY THR PRO ALA PRO VAL SEQRES 21 X 656 VAL THR GLU SER ASN LEU GLY VAL LEU LYS ALA ASP ALA SEQRES 22 X 656 VAL ASN VAL ALA VAL HIS GLY HIS ASN PRO VAL LEU SER SEQRES 23 X 656 ASP ILE ILE VAL SER VAL SER LYS GLU MET GLU ASN GLU SEQRES 24 X 656 ALA ARG ALA ALA GLY ALA THR GLY ILE ASN VAL VAL GLY SEQRES 25 X 656 ILE CYS CYS THR GLY ASN GLU VAL LEU MET ARG HIS GLY SEQRES 26 X 656 ILE PRO ALA CYS THR HIS SER VAL SER GLN GLU MET ALA SEQRES 27 X 656 MET ILE THR GLY ALA LEU ASP ALA MET ILE LEU ASP TYR SEQRES 28 X 656 GLN CYS ILE GLN PRO SER VAL ALA THR ILE ALA GLU CYS SEQRES 29 X 656 THR GLY THR THR VAL ILE THR THR MET GLU MET SER LYS SEQRES 30 X 656 ILE THR GLY ALA THR HIS VAL ASN PHE ALA GLU GLU ALA SEQRES 31 X 656 ALA VAL GLU ASN ALA LYS GLN ILE LEU ARG LEU ALA ILE SEQRES 32 X 656 ASP THR PHE LYS ARG ARG LYS GLY LYS PRO VAL GLU ILE SEQRES 33 X 656 PRO ASN ILE LYS THR LYS VAL VAL ALA GLY PHE SER THR SEQRES 34 X 656 GLU ALA ILE ILE ASN ALA LEU SER LYS LEU ASN ALA ASN SEQRES 35 X 656 ASP PRO LEU LYS PRO LEU ILE ASP ASN VAL VAL ASN GLY SEQRES 36 X 656 ASN ILE ARG GLY VAL CYS LEU PHE ALA GLY CYS ASN ASN SEQRES 37 X 656 VAL LYS VAL PRO GLN ASP GLN ASN PHE THR THR ILE ALA SEQRES 38 X 656 ARG LYS LEU LEU LYS GLN ASN VAL LEU VAL VAL ALA THR SEQRES 39 X 656 GLY CYS GLY ALA GLY ALA LEU MET ARG HIS GLY PHE MET SEQRES 40 X 656 ASP PRO ALA ASN VAL ASP GLU LEU CYS GLY ASP GLY LEU SEQRES 41 X 656 LYS ALA VAL LEU THR ALA ILE GLY GLU ALA ASN GLY LEU SEQRES 42 X 656 GLY GLY PRO LEU PRO PRO VAL LEU HIS MET GLY SER CYS SEQRES 43 X 656 VAL ASP ASN SER ARG ALA VAL ALA LEU VAL ALA ALA LEU SEQRES 44 X 656 ALA ASN ARG LEU GLY VAL ASP LEU ASP ARG LEU PRO VAL SEQRES 45 X 656 VAL ALA SER ALA ALA GLU ALA MET HIS GLU LYS ALA VAL SEQRES 46 X 656 ALA ILE GLY THR TRP ALA VAL THR ILE GLY LEU PRO THR SEQRES 47 X 656 HIS ILE GLY VAL LEU PRO PRO ILE THR GLY SER LEU PRO SEQRES 48 X 656 VAL THR GLN ILE LEU THR SER SER VAL LYS ASP ILE THR SEQRES 49 X 656 GLY GLY TYR PHE ILE VAL GLU LEU ASP PRO GLU THR ALA SEQRES 50 X 656 ALA ASP LYS LEU LEU ALA ALA ILE ASN GLU ARG ARG ALA SEQRES 51 X 656 GLY LEU GLY LEU PRO TRP HET FE2 X1004 2 HET SF4 X1001 8 HET FES X1002 4 HET WCC X1003 8 HETNAM FE2 FE (II) ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM WCC FE(3)-NI(1)-S(4) CLUSTER HETSYN WCC C CLUSTER CUBANE FORMUL 2 FE2 FE 2+ FORMUL 3 SF4 FE4 S4 FORMUL 4 FES FE2 S2 FORMUL 5 WCC FE3 NI S4 FORMUL 6 HOH *884(H2 O) HELIX 1 1 ASP X 10 GLY X 24 1 15 HELIX 2 2 THR X 27 LYS X 36 1 10 HELIX 3 3 CYS X 39 GLY X 45 1 7 HELIX 4 4 THR X 73 GLN X 109 1 37 HELIX 5 5 ASP X 119 GLY X 131 1 13 HELIX 6 6 LYS X 138 ASP X 153 1 16 HELIX 7 7 VAL X 161 THR X 166 1 6 HELIX 8 8 PRO X 169 HIS X 179 1 11 HELIX 9 9 GLY X 185 THR X 197 1 13 HELIX 10 10 ASP X 204 GLY X 235 1 32 HELIX 11 11 ASN X 245 LEU X 249 5 5 HELIX 12 12 ASN X 262 MET X 276 1 15 HELIX 13 13 MET X 276 ALA X 283 1 8 HELIX 14 14 CYS X 294 GLY X 305 1 12 HELIX 15 15 HIS X 311 VAL X 313 5 3 HELIX 16 16 SER X 314 THR X 321 1 8 HELIX 17 17 SER X 337 GLY X 346 1 10 HELIX 18 18 ALA X 367 GLU X 369 5 3 HELIX 19 19 ALA X 370 ARG X 389 1 20 HELIX 20 20 SER X 408 LYS X 418 1 11 HELIX 21 21 PRO X 424 ASN X 434 1 11 HELIX 22 22 ASP X 454 GLN X 467 1 14 HELIX 23 23 GLY X 475 HIS X 484 1 10 HELIX 24 24 ASP X 488 ALA X 490 5 3 HELIX 25 25 ASN X 491 CYS X 496 1 6 HELIX 26 26 GLY X 497 ASN X 511 1 15 HELIX 27 27 ASP X 528 GLY X 544 1 17 HELIX 28 28 ASP X 546 LEU X 550 5 5 HELIX 29 29 HIS X 561 GLY X 575 1 15 HELIX 30 30 SER X 589 SER X 598 1 10 HELIX 31 31 VAL X 600 GLY X 605 1 6 HELIX 32 32 ASP X 613 LEU X 632 1 20 SHEET 1 A 2 CYS X 47 CYS X 48 0 SHEET 2 A 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 B 2 VAL X 240 SER X 244 0 SHEET 2 B 2 THR X 401 ALA X 405 -1 O VAL X 403 N THR X 242 SHEET 1 C 6 ALA X 308 THR X 310 0 SHEET 2 C 6 ILE X 288 ILE X 293 1 N GLY X 292 O CYS X 309 SHEET 3 C 6 VAL X 254 HIS X 259 1 N VAL X 254 O ASN X 289 SHEET 4 C 6 LEU X 324 LEU X 329 1 O ILE X 328 N ALA X 257 SHEET 5 C 6 THR X 348 THR X 351 1 O ILE X 350 N LEU X 329 SHEET 6 C 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 D 6 VAL X 520 GLY X 524 0 SHEET 2 D 6 VAL X 469 THR X 474 1 N ALA X 473 O MET X 523 SHEET 3 D 6 GLY X 439 PHE X 443 1 N GLY X 439 O LEU X 470 SHEET 4 D 6 VAL X 552 ALA X 556 1 O SER X 555 N LEU X 442 SHEET 5 D 6 PRO X 577 ILE X 580 1 O HIS X 579 N ALA X 554 SHEET 6 D 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK SG CYS X 39 FE2 FES X1002 1555 1555 2.27 LINK SG CYS X 47 FE1 FES X1002 1555 1555 2.28 LINK SG CYS X 48 FE3 SF4 X1001 1555 1555 2.29 LINK SG CYS X 51 FE2 SF4 X1001 1555 1555 2.28 LINK SG CYS X 56 FE1 SF4 X1001 1555 1555 2.30 LINK SG CYS X 70 FE4 SF4 X1001 1555 1555 2.32 LINK NE2 HIS X 261 FE BFE2 X1004 1555 1555 1.82 LINK SG ACYS X 295 FE AFE2 X1004 1555 1555 2.16 LINK SG CYS X 333 FE4 WCC X1003 1555 1555 2.31 LINK SG CYS X 446 FE1 WCC X1003 1555 1555 2.42 LINK SG CYS X 476 FE3 WCC X1003 1555 1555 2.32 LINK S1 WCC X1003 FE AFE2 X1004 1555 1555 2.00 LINK S1 WCC X1003 FE BFE2 X1004 1555 1555 2.23 LINK FE BFE2 X1004 O HOH X1888 1555 1555 1.95 CISPEP 1 LYS X 36 PRO X 37 0 -5.26 CISPEP 2 GLY X 54 PRO X 55 0 5.06 CISPEP 3 GLU X 64 PRO X 65 0 -0.81 CISPEP 4 GLU X 64 PRO X 65 0 -0.73 SITE 1 AC1 6 HIS X 261 CYS X 295 CYS X 526 LYS X 563 SITE 2 AC1 6 WCC X1003 HOH X1888 SITE 1 AC2 9 CYS X 48 CYS X 51 GLN X 53 GLY X 54 SITE 2 AC2 9 CYS X 56 ILE X 69 CYS X 70 ARG X 80 SITE 3 AC2 9 MET X 199 SITE 1 AC3 3 CYS X 39 GLY X 42 CYS X 47 SITE 1 AC4 13 HIS X 261 CYS X 295 SER X 312 CYS X 333 SITE 2 AC4 13 GLY X 445 CYS X 446 CYS X 476 CYS X 526 SITE 3 AC4 13 MET X 560 HIS X 561 LYS X 563 FE2 X1004 SITE 4 AC4 13 HOH X1888 CRYST1 111.830 74.520 70.740 90.00 111.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008942 0.000000 0.003504 0.00000 SCALE2 0.000000 0.013419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015183 0.00000