data_3B5D # _entry.id 3B5D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B5D RCSB RCSB045098 WWPDB D_1000045098 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B5D _pdbx_database_status.recvd_initial_deposition_date 2007-10-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, G.' 1 'Chen, Y.J.' 2 # _citation.id primary _citation.title 'X-ray structure of EmrE supports dual topology model.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 104 _citation.page_first 18999 _citation.page_last 19004 _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18024586 _citation.pdbx_database_id_DOI 10.1073/pnas.0709387104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, Y.J.' 1 primary 'Pornillos, O.' 2 primary 'Lieu, S.' 3 primary 'Ma, C.' 4 primary 'Chen, A.P.' 5 primary 'Chang, G.' 6 # _cell.entry_id 3B5D _cell.length_a 115.1 _cell.length_b 43.7 _cell.length_c 76.4 _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B5D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Multidrug transporter emrE' 11963.278 2 ? ? ? ? 2 non-polymer syn TETRAPHENYLPHOSPHONIUM 339.389 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Efflux-multidrug resistance protein emrE, Methyl viologen resistance protein C, Ethidium resistance protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG QRLDLPAIIGMMLICAGVLIINLLSRSTPH ; _entity_poly.pdbx_seq_one_letter_code_can ;MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG QRLDLPAIIGMMLICAGVLIINLLSRSTPH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 PRO n 1 4 TYR n 1 5 ILE n 1 6 TYR n 1 7 LEU n 1 8 GLY n 1 9 GLY n 1 10 ALA n 1 11 ILE n 1 12 LEU n 1 13 ALA n 1 14 GLU n 1 15 VAL n 1 16 ILE n 1 17 GLY n 1 18 THR n 1 19 THR n 1 20 LEU n 1 21 MET n 1 22 LYS n 1 23 PHE n 1 24 SER n 1 25 GLU n 1 26 GLY n 1 27 PHE n 1 28 THR n 1 29 ARG n 1 30 LEU n 1 31 TRP n 1 32 PRO n 1 33 SER n 1 34 VAL n 1 35 GLY n 1 36 THR n 1 37 ILE n 1 38 ILE n 1 39 CYS n 1 40 TYR n 1 41 CYS n 1 42 ALA n 1 43 SER n 1 44 PHE n 1 45 TRP n 1 46 LEU n 1 47 LEU n 1 48 ALA n 1 49 GLN n 1 50 THR n 1 51 LEU n 1 52 ALA n 1 53 TYR n 1 54 ILE n 1 55 PRO n 1 56 THR n 1 57 GLY n 1 58 ILE n 1 59 ALA n 1 60 TYR n 1 61 ALA n 1 62 ILE n 1 63 TRP n 1 64 SER n 1 65 GLY n 1 66 VAL n 1 67 GLY n 1 68 ILE n 1 69 VAL n 1 70 LEU n 1 71 ILE n 1 72 SER n 1 73 LEU n 1 74 LEU n 1 75 SER n 1 76 TRP n 1 77 GLY n 1 78 PHE n 1 79 PHE n 1 80 GLY n 1 81 GLN n 1 82 ARG n 1 83 LEU n 1 84 ASP n 1 85 LEU n 1 86 PRO n 1 87 ALA n 1 88 ILE n 1 89 ILE n 1 90 GLY n 1 91 MET n 1 92 MET n 1 93 LEU n 1 94 ILE n 1 95 CYS n 1 96 ALA n 1 97 GLY n 1 98 VAL n 1 99 LEU n 1 100 ILE n 1 101 ILE n 1 102 ASN n 1 103 LEU n 1 104 LEU n 1 105 SER n 1 106 ARG n 1 107 SER n 1 108 THR n 1 109 PRO n 1 110 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'emrE, eb, mvrC' _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pIVEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EMRE_ECOLI _struct_ref.pdbx_db_accession P23895 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG QRLDLPAIIGMMLICAGVLIINLLSRSTPH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3B5D A 1 ? 110 ? P23895 1 ? 110 ? 1 110 2 1 3B5D B 1 ? 110 ? P23895 1 ? 110 ? 1 110 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P4P non-polymer . TETRAPHENYLPHOSPHONIUM ? 'C24 H20 P 1' 339.389 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3B5D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.82 _exptl_crystal.density_percent_sol 67.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details ;100-200 mM calcium chloride, 100 mM Tris, 11-14% (w/v) PEG 2,000 MME , and 0.3-0.6% (w/v) NG, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-11-16 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 0.9793 1.0 3 0.9184 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9790, 0.9793, 0.9184' # _reflns.entry_id 3B5D _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 3.0 _reflns.d_resolution_low 50 _reflns.number_all 3077 _reflns.number_obs 3077 _reflns.percent_possible_obs 92 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.B_iso_Wilson_estimate 44.4 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.11 _reflns_shell.percent_possible_all 34.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.32 _reflns_shell.meanI_over_sigI_obs 0.7 _reflns_shell.pdbx_redundancy 1.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 286 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3B5D _refine.ls_d_res_high 3.8 _refine.ls_d_res_low 20 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 3680 _refine.ls_number_reflns_obs 3077 _refine.ls_number_reflns_R_free 335 _refine.ls_percent_reflns_obs 83.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.325 _refine.ls_R_factor_R_free 0.364 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.B_iso_mean 201 _refine.aniso_B[1][1] 23.57 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 50.87 _refine.aniso_B[2][2] 64.33 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -87.89 _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3B5D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 20 _refine_analyze.Luzzati_coordinate_error_free 0.92 _refine_analyze.Luzzati_sigma_a_free 1.02 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 199 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 224 _refine_hist.d_res_high 3.8 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 2.0 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_deg 21.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_deg 1.35 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 3.8 _refine_ls_shell.d_res_low 4.04 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.468 _refine_ls_shell.percent_reflns_obs 55.7 _refine_ls_shell.R_factor_R_free 0.512 _refine_ls_shell.R_factor_R_free_error 0.077 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 286 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B5D _struct.title 'EmrE multidrug transporter in complex with TPP, C2 crystal form' _struct.pdbx_descriptor 'Multidrug transporter emrE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B5D _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;HELICAL MEMBRANE PROTEIN, MULTIDRUG RESISTANCE TRANSPORTER, SMR, Antiport, Inner membrane, Transmembrane, Joint Center for Innovative Membrane Protein Technologies, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_biol.id 1 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE P4P A 350' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id PHE _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 44 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id PHE _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 44 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 3B5D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3B5D _atom_sites.fract_transf_matrix[1][1] 0.008688 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002840 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022883 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013770 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 TYR 4 4 ? ? ? A . n A 1 5 ILE 5 5 ? ? ? A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 TRP 76 76 76 TRP TRP A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 ARG 106 106 ? ? ? A . n A 1 107 SER 107 107 ? ? ? A . n A 1 108 THR 108 108 ? ? ? A . n A 1 109 PRO 109 109 ? ? ? A . n A 1 110 HIS 110 110 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ASN 2 2 ? ? ? B . n B 1 3 PRO 3 3 ? ? ? B . n B 1 4 TYR 4 4 4 TYR TYR B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 TYR 6 6 6 TYR TYR B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 ILE 16 16 16 ILE ILE B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 MET 21 21 21 MET MET B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 SER 24 24 24 SER SER B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 THR 28 28 28 THR THR B . n B 1 29 ARG 29 29 29 ARG ARG B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 TRP 31 31 31 TRP TRP B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 THR 36 36 36 THR THR B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 CYS 39 39 39 CYS CYS B . n B 1 40 TYR 40 40 40 TYR TYR B . n B 1 41 CYS 41 41 41 CYS CYS B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 SER 43 43 43 SER SER B . n B 1 44 PHE 44 44 44 PHE PHE B . n B 1 45 TRP 45 45 45 TRP TRP B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 THR 50 50 50 THR THR B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 TYR 53 53 53 TYR TYR B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 TYR 60 60 60 TYR TYR B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 TRP 63 63 63 TRP TRP B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 VAL 69 69 69 VAL VAL B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 ILE 71 71 71 ILE ILE B . n B 1 72 SER 72 72 72 SER SER B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 LEU 74 74 74 LEU LEU B . n B 1 75 SER 75 75 75 SER SER B . n B 1 76 TRP 76 76 76 TRP TRP B . n B 1 77 GLY 77 77 77 GLY GLY B . n B 1 78 PHE 78 78 78 PHE PHE B . n B 1 79 PHE 79 79 79 PHE PHE B . n B 1 80 GLY 80 80 80 GLY GLY B . n B 1 81 GLN 81 81 81 GLN GLN B . n B 1 82 ARG 82 82 82 ARG ARG B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 ASP 84 84 84 ASP ASP B . n B 1 85 LEU 85 85 85 LEU LEU B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 ALA 87 87 87 ALA ALA B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 ILE 89 89 89 ILE ILE B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 MET 91 91 91 MET MET B . n B 1 92 MET 92 92 92 MET MET B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 VAL 98 98 98 VAL VAL B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 ILE 100 100 100 ILE ILE B . n B 1 101 ILE 101 101 101 ILE ILE B . n B 1 102 ASN 102 102 102 ASN ASN B . n B 1 103 LEU 103 103 ? ? ? B . n B 1 104 LEU 104 104 ? ? ? B . n B 1 105 SER 105 105 ? ? ? B . n B 1 106 ARG 106 106 ? ? ? B . n B 1 107 SER 107 107 ? ? ? B . n B 1 108 THR 108 108 ? ? ? B . n B 1 109 PRO 109 109 ? ? ? B . n B 1 110 HIS 110 110 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A TYR 4 ? A TYR 4 5 1 Y 1 A ILE 5 ? A ILE 5 6 1 Y 1 A ARG 106 ? A ARG 106 7 1 Y 1 A SER 107 ? A SER 107 8 1 Y 1 A THR 108 ? A THR 108 9 1 Y 1 A PRO 109 ? A PRO 109 10 1 Y 1 A HIS 110 ? A HIS 110 11 1 Y 1 B MET 1 ? B MET 1 12 1 Y 1 B ASN 2 ? B ASN 2 13 1 Y 1 B PRO 3 ? B PRO 3 14 1 Y 1 B LEU 103 ? B LEU 103 15 1 Y 1 B LEU 104 ? B LEU 104 16 1 Y 1 B SER 105 ? B SER 105 17 1 Y 1 B ARG 106 ? B ARG 106 18 1 Y 1 B SER 107 ? B SER 107 19 1 Y 1 B THR 108 ? B THR 108 20 1 Y 1 B PRO 109 ? B PRO 109 21 1 Y 1 B HIS 110 ? B HIS 110 # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'CA ATOMS ONLY' B 'CA ATOMS ONLY' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name TETRAPHENYLPHOSPHONIUM _pdbx_entity_nonpoly.comp_id P4P # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id P4P _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 350 _pdbx_nonpoly_scheme.auth_seq_num 350 _pdbx_nonpoly_scheme.pdb_mon_id P4P _pdbx_nonpoly_scheme.auth_mon_id TTA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . #