data_3B5L # _entry.id 3B5L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3B5L pdb_00003b5l 10.2210/pdb3b5l/pdb RCSB RCSB045106 ? ? WWPDB D_1000045106 ? ? # _pdbx_database_status.entry_id 3B5L _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stoddard, B.L.' 1 'Doyle, L.A.' 2 # _citation.id primary _citation.title 'De novo computational design of retro-aldol enzymes.' _citation.journal_abbrev Science _citation.journal_volume 319 _citation.page_first 1387 _citation.page_last 1391 _citation.year 2008 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18323453 _citation.pdbx_database_id_DOI 10.1126/science.1152692 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, L.' 1 ? primary 'Althoff, E.A.' 2 ? primary 'Clemente, F.R.' 3 ? primary 'Doyle, L.' 4 ? primary 'Rothlisberger, D.' 5 ? primary 'Zanghellini, A.' 6 ? primary 'Gallaher, J.L.' 7 ? primary 'Betker, J.L.' 8 ? primary 'Tanaka, F.' 9 ? primary 'Barbas, C.F.' 10 ? primary 'Hilvert, D.' 11 ? primary 'Houk, K.N.' 12 ? primary 'Stoddard, B.L.' 13 ? primary 'Baker, D.' 14 ? # _cell.length_a 39.190 _cell.length_b 66.060 _cell.length_c 66.070 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3B5L _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3B5L _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Endoxylanase 21916.879 1 3.2.1.8 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'AMMONIUM ION' 18.038 2 ? ? ? ? 4 water nat water 18.015 174 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMDTTITQNQTGYDNGYFYSFWTDAPGTVSMTLHSGGSYSTSWRNTGHFKAGKGWSTGGRRTVTYNASFNPSGIAYLT LYGWTRNPLVSYLIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTRTFQIFWSVRQQKRTSGTITIGNHFD AWARAGMNLGSHDYQIMATKGWQSSGSSTVSISEGGNP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMDTTITQNQTGYDNGYFYSFWTDAPGTVSMTLHSGGSYSTSWRNTGHFKAGKGWSTGGRRTVTYNASFNPSGIAYLT LYGWTRNPLVSYLIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTRTFQIFWSVRQQKRTSGTITIGNHFD AWARAGMNLGSHDYQIMATKGWQSSGSSTVSISEGGNP ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASP n 1 6 THR n 1 7 THR n 1 8 ILE n 1 9 THR n 1 10 GLN n 1 11 ASN n 1 12 GLN n 1 13 THR n 1 14 GLY n 1 15 TYR n 1 16 ASP n 1 17 ASN n 1 18 GLY n 1 19 TYR n 1 20 PHE n 1 21 TYR n 1 22 SER n 1 23 PHE n 1 24 TRP n 1 25 THR n 1 26 ASP n 1 27 ALA n 1 28 PRO n 1 29 GLY n 1 30 THR n 1 31 VAL n 1 32 SER n 1 33 MET n 1 34 THR n 1 35 LEU n 1 36 HIS n 1 37 SER n 1 38 GLY n 1 39 GLY n 1 40 SER n 1 41 TYR n 1 42 SER n 1 43 THR n 1 44 SER n 1 45 TRP n 1 46 ARG n 1 47 ASN n 1 48 THR n 1 49 GLY n 1 50 HIS n 1 51 PHE n 1 52 LYS n 1 53 ALA n 1 54 GLY n 1 55 LYS n 1 56 GLY n 1 57 TRP n 1 58 SER n 1 59 THR n 1 60 GLY n 1 61 GLY n 1 62 ARG n 1 63 ARG n 1 64 THR n 1 65 VAL n 1 66 THR n 1 67 TYR n 1 68 ASN n 1 69 ALA n 1 70 SER n 1 71 PHE n 1 72 ASN n 1 73 PRO n 1 74 SER n 1 75 GLY n 1 76 ILE n 1 77 ALA n 1 78 TYR n 1 79 LEU n 1 80 THR n 1 81 LEU n 1 82 TYR n 1 83 GLY n 1 84 TRP n 1 85 THR n 1 86 ARG n 1 87 ASN n 1 88 PRO n 1 89 LEU n 1 90 VAL n 1 91 SER n 1 92 TYR n 1 93 LEU n 1 94 ILE n 1 95 VAL n 1 96 GLU n 1 97 SER n 1 98 TRP n 1 99 GLY n 1 100 THR n 1 101 TYR n 1 102 ARG n 1 103 PRO n 1 104 THR n 1 105 GLY n 1 106 THR n 1 107 TYR n 1 108 LYS n 1 109 GLY n 1 110 THR n 1 111 VAL n 1 112 THR n 1 113 THR n 1 114 ASP n 1 115 GLY n 1 116 GLY n 1 117 THR n 1 118 TYR n 1 119 ASP n 1 120 ILE n 1 121 TYR n 1 122 GLU n 1 123 THR n 1 124 TRP n 1 125 ARG n 1 126 TYR n 1 127 ASN n 1 128 ALA n 1 129 PRO n 1 130 SER n 1 131 ILE n 1 132 GLU n 1 133 GLY n 1 134 THR n 1 135 ARG n 1 136 THR n 1 137 PHE n 1 138 GLN n 1 139 ILE n 1 140 PHE n 1 141 TRP n 1 142 SER n 1 143 VAL n 1 144 ARG n 1 145 GLN n 1 146 GLN n 1 147 LYS n 1 148 ARG n 1 149 THR n 1 150 SER n 1 151 GLY n 1 152 THR n 1 153 ILE n 1 154 THR n 1 155 ILE n 1 156 GLY n 1 157 ASN n 1 158 HIS n 1 159 PHE n 1 160 ASP n 1 161 ALA n 1 162 TRP n 1 163 ALA n 1 164 ARG n 1 165 ALA n 1 166 GLY n 1 167 MET n 1 168 ASN n 1 169 LEU n 1 170 GLY n 1 171 SER n 1 172 HIS n 1 173 ASP n 1 174 TYR n 1 175 GLN n 1 176 ILE n 1 177 MET n 1 178 ALA n 1 179 THR n 1 180 LYS n 1 181 GLY n 1 182 TRP n 1 183 GLN n 1 184 SER n 1 185 SER n 1 186 GLY n 1 187 SER n 1 188 SER n 1 189 THR n 1 190 VAL n 1 191 SER n 1 192 ILE n 1 193 SER n 1 194 GLU n 1 195 GLY n 1 196 GLY n 1 197 ASN n 1 198 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'artificial gene' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET29b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Computationally designed based on the structure of thermophilic b-1,4-xylanase from Nonomuraea flexuosa' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3B5L _struct_ref.pdbx_db_accession 3B5L _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DTTITQNQTGYDNGYFYSFWTDAPGTVSMTLHSGGSYSTSWRNTGNFVAGKGWSTGGRRTVTYNASFNPSGNAYLTLYGW TRNPLVEYYIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTRTFQQFWSVRQQKRTSGTITIGNHFDAWAR AGMNLGSHDYQIMATEGYQSSGSSTVSISEGGNP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B5L _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 198 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3B5L _struct_ref_seq.db_align_beg -3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 194 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -3 _struct_ref_seq.pdbx_auth_seq_align_end 194 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH4 non-polymer . 'AMMONIUM ION' ? 'H4 N 1' 18.038 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3B5L _exptl.method 'X-RAY DIFFRACTION' # loop_ _exptl_crystal.id _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 1.95 ? 36.96 ? ? ? 2 ? ? ? ? ? ? 3 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, HANGING DROP' 6.5 298 '1.9M Ammonium Sulfate, 0.1M MES pH 6.5, 5% v/v PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 298K' ? . 2 'VAPOR DIFFUSION, HANGING DROP' 6.5 298 '2.0M Ammonium Sulfate, 0.1M MES pH 6.5, 5% v/v PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 298K' ? . 3 'VAPOR DIFFUSION, HANGING DROP' 6.5 298 '2.1M Ammonium Sulfate, 0.1M MES pH 6.5, 5% v/v PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 298K' ? . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2007-10-01 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3B5L _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 46.73 _reflns.number_obs 16082 _reflns.pdbx_scaling_rejects 424 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_netI_over_sigmaI 12.000 _reflns.pdbx_chi_squared 0.960 _reflns.pdbx_redundancy 3.490 _reflns.percent_possible_obs 97.500 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 16489 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 29.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 3300 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.220 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.810 _reflns_shell.pdbx_redundancy 2.45 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1347 _reflns_shell.percent_possible_all 83.30 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3B5L _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 33.71 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.530 _refine.ls_number_reflns_obs 16082 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.248 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 819 _refine.B_iso_mean 17.723 _refine.aniso_B[1][1] 0.730 _refine.aniso_B[2][2] -0.120 _refine.aniso_B[3][3] -0.610 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.pdbx_overall_ESU_R 0.170 _refine.pdbx_overall_ESU_R_Free 0.154 _refine.overall_SU_ML 0.093 _refine.overall_SU_B 5.799 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16082 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'TRUNCATED 1m4w' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1532 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1718 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 33.71 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1591 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2172 1.069 1.896 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 197 7.317 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 70 34.423 22.429 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 214 10.634 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 11.772 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 223 0.071 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1246 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 691 0.171 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1047 0.301 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 175 0.100 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 58 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 23 0.079 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 993 0.313 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1553 0.539 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 735 0.835 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 619 1.136 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 80.930 _refine_ls_shell.number_reflns_R_work 904 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.318 _refine_ls_shell.R_factor_R_free 0.400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 68 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 972 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B5L _struct.title 'Crystal Structure of a Novel Engineered Retroaldolase: RA-61' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B5L _struct_keywords.text 'jelly roll, retroaldolase, engineered, alpha-beta, computationally designed, Glycosidase, Hydrolase, Xylan degradation' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ILE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 155 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 165 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ILE _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 151 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 161 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 87 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 83 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 88 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 84 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 6 ? ILE A 8 ? THR B 2 ILE B 4 A 2 VAL A 31 ? LEU A 35 ? VAL B 27 LEU B 31 A 3 SER A 40 ? TRP A 45 ? SER B 36 TRP B 41 A 4 GLY A 186 ? GLU A 194 ? GLY B 182 GLU B 190 A 5 THR A 64 ? PRO A 73 ? THR B 60 PRO B 69 A 6 SER A 150 ? THR A 154 ? SER B 146 THR B 150 B 1 GLN A 12 ? ASP A 16 ? GLN B 8 ASP B 12 B 2 TYR A 19 ? THR A 25 ? TYR B 15 THR B 21 B 3 HIS A 50 ? TRP A 57 ? HIS B 46 TRP B 53 B 4 SER A 171 ? TRP A 182 ? SER B 167 TRP B 178 B 5 ILE A 76 ? ARG A 86 ? ILE B 72 ARG B 82 B 6 VAL A 90 ? TRP A 98 ? VAL B 86 TRP B 94 B 7 ARG A 135 ? ARG A 144 ? ARG B 131 ARG B 140 B 8 GLY A 116 ? ALA A 128 ? GLY B 112 ALA B 124 B 9 THR A 106 ? THR A 113 ? THR B 102 THR B 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE B 4 O MET A 33 ? O MET B 29 A 2 3 N THR A 34 ? N THR B 30 O SER A 42 ? O SER B 38 A 3 4 N TYR A 41 ? N TYR B 37 O VAL A 190 ? O VAL B 186 A 4 5 O SER A 193 ? O SER B 189 N THR A 66 ? N THR B 62 A 5 6 N VAL A 65 ? N VAL B 61 O ILE A 153 ? O ILE B 149 B 1 2 N ASP A 16 ? N ASP B 12 O TYR A 19 ? O TYR B 15 B 2 3 N PHE A 20 ? N PHE B 16 O GLY A 56 ? O GLY B 52 B 3 4 N TRP A 57 ? N TRP B 53 O GLN A 175 ? O GLN B 171 B 4 5 O ALA A 178 ? O ALA B 174 N THR A 80 ? N THR B 76 B 5 6 N LEU A 81 ? N LEU B 77 O ILE A 94 ? O ILE B 90 B 6 7 N VAL A 95 ? N VAL B 91 O SER A 142 ? O SER B 138 B 7 8 O TRP A 141 ? O TRP B 137 N TYR A 121 ? N TYR B 117 B 8 9 O ILE A 120 ? O ILE B 116 N GLY A 109 ? N GLY B 105 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 195 ? 10 'BINDING SITE FOR RESIDUE SO4 B 195' AC2 Software B SO4 196 ? 5 'BINDING SITE FOR RESIDUE SO4 B 196' AC3 Software B NH4 198 ? 1 'BINDING SITE FOR RESIDUE NH4 B 198' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 SER A 2 ? SER B -2 . ? 1_555 ? 2 AC1 10 HIS A 3 ? HIS B -1 . ? 1_555 ? 3 AC1 10 GLY A 1 ? GLY B -3 . ? 1_555 ? 4 AC1 10 SER A 37 ? SER B 33 . ? 1_555 ? 5 AC1 10 THR A 104 ? THR B 100 . ? 3_545 ? 6 AC1 10 TYR A 121 ? TYR B 117 . ? 3_545 ? 7 AC1 10 HOH F . ? HOH B 220 . ? 3_545 ? 8 AC1 10 HOH F . ? HOH B 276 . ? 3_545 ? 9 AC1 10 HOH F . ? HOH B 285 . ? 1_555 ? 10 AC1 10 HOH F . ? HOH B 367 . ? 1_555 ? 11 AC2 5 ARG A 135 ? ARG B 131 . ? 4_545 ? 12 AC2 5 HOH F . ? HOH B 267 . ? 4_545 ? 13 AC2 5 HOH F . ? HOH B 336 . ? 3_545 ? 14 AC2 5 HOH F . ? HOH B 368 . ? 1_555 ? 15 AC2 5 HOH F . ? HOH B 369 . ? 1_555 ? 16 AC3 1 TRP A 182 ? TRP B 178 . ? 1_555 ? # _atom_sites.entry_id 3B5L _atom_sites.fract_transf_matrix[1][1] 0.025517 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015138 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015135 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY B . n A 1 2 SER 2 -2 -2 SER SER B . n A 1 3 HIS 3 -1 -1 HIS HIS B . n A 1 4 MET 4 0 0 MET MET B . n A 1 5 ASP 5 1 1 ASP ASP B . n A 1 6 THR 6 2 2 THR THR B . n A 1 7 THR 7 3 3 THR THR B . n A 1 8 ILE 8 4 4 ILE ILE B . n A 1 9 THR 9 5 5 THR THR B . n A 1 10 GLN 10 6 6 GLN ALA B . n A 1 11 ASN 11 7 7 ASN ASN B . n A 1 12 GLN 12 8 8 GLN GLN B . n A 1 13 THR 13 9 9 THR THR B . n A 1 14 GLY 14 10 10 GLY GLY B . n A 1 15 TYR 15 11 11 TYR TYR B . n A 1 16 ASP 16 12 12 ASP ASP B . n A 1 17 ASN 17 13 13 ASN ASN B . n A 1 18 GLY 18 14 14 GLY GLY B . n A 1 19 TYR 19 15 15 TYR TYR B . n A 1 20 PHE 20 16 16 PHE PHE B . n A 1 21 TYR 21 17 17 TYR TYR B . n A 1 22 SER 22 18 18 SER SER B . n A 1 23 PHE 23 19 19 PHE PHE B . n A 1 24 TRP 24 20 20 TRP TRP B . n A 1 25 THR 25 21 21 THR THR B . n A 1 26 ASP 26 22 22 ASP ASP B . n A 1 27 ALA 27 23 23 ALA ALA B . n A 1 28 PRO 28 24 24 PRO PRO B . n A 1 29 GLY 29 25 25 GLY GLY B . n A 1 30 THR 30 26 26 THR THR B . n A 1 31 VAL 31 27 27 VAL VAL B . n A 1 32 SER 32 28 28 SER SER B . n A 1 33 MET 33 29 29 MET MET B . n A 1 34 THR 34 30 30 THR THR B . n A 1 35 LEU 35 31 31 LEU LEU B . n A 1 36 HIS 36 32 32 HIS HIS B . n A 1 37 SER 37 33 33 SER SER B . n A 1 38 GLY 38 34 34 GLY GLY B . n A 1 39 GLY 39 35 35 GLY GLY B . n A 1 40 SER 40 36 36 SER SER B . n A 1 41 TYR 41 37 37 TYR TYR B . n A 1 42 SER 42 38 38 SER SER B . n A 1 43 THR 43 39 39 THR THR B . n A 1 44 SER 44 40 40 SER SER B . n A 1 45 TRP 45 41 41 TRP TRP B . n A 1 46 ARG 46 42 42 ARG ALA B . n A 1 47 ASN 47 43 43 ASN ASN B . n A 1 48 THR 48 44 44 THR THR B . n A 1 49 GLY 49 45 45 GLY GLY B . n A 1 50 HIS 50 46 46 HIS HIS B . n A 1 51 PHE 51 47 47 PHE PHE B . n A 1 52 LYS 52 48 48 LYS ALA B . n A 1 53 ALA 53 49 49 ALA ALA B . n A 1 54 GLY 54 50 50 GLY GLY B . n A 1 55 LYS 55 51 51 LYS LYS B . n A 1 56 GLY 56 52 52 GLY GLY B . n A 1 57 TRP 57 53 53 TRP TRP B . n A 1 58 SER 58 54 54 SER SER B . n A 1 59 THR 59 55 55 THR THR B . n A 1 60 GLY 60 56 56 GLY GLY B . n A 1 61 GLY 61 57 57 GLY GLY B . n A 1 62 ARG 62 58 58 ARG ARG B . n A 1 63 ARG 63 59 59 ARG ARG B . n A 1 64 THR 64 60 60 THR THR B . n A 1 65 VAL 65 61 61 VAL VAL B . n A 1 66 THR 66 62 62 THR THR B . n A 1 67 TYR 67 63 63 TYR TYR B . n A 1 68 ASN 68 64 64 ASN ASN B . n A 1 69 ALA 69 65 65 ALA ALA B . n A 1 70 SER 70 66 66 SER SER B . n A 1 71 PHE 71 67 67 PHE PHE B . n A 1 72 ASN 72 68 68 ASN ASN B . n A 1 73 PRO 73 69 69 PRO PRO B . n A 1 74 SER 74 70 70 SER SER B . n A 1 75 GLY 75 71 71 GLY GLY B . n A 1 76 ILE 76 72 72 ILE ILE B . n A 1 77 ALA 77 73 73 ALA ALA B . n A 1 78 TYR 78 74 74 TYR TYR B . n A 1 79 LEU 79 75 75 LEU LEU B . n A 1 80 THR 80 76 76 THR THR B . n A 1 81 LEU 81 77 77 LEU LEU B . n A 1 82 TYR 82 78 78 TYR TYR B . n A 1 83 GLY 83 79 79 GLY GLY B . n A 1 84 TRP 84 80 80 TRP TRP B . n A 1 85 THR 85 81 81 THR THR B . n A 1 86 ARG 86 82 82 ARG ARG B . n A 1 87 ASN 87 83 83 ASN ASN B . n A 1 88 PRO 88 84 84 PRO PRO B . n A 1 89 LEU 89 85 85 LEU LEU B . n A 1 90 VAL 90 86 86 VAL VAL B . n A 1 91 SER 91 87 87 SER SER B . n A 1 92 TYR 92 88 88 TYR TYR B . n A 1 93 LEU 93 89 89 LEU LEU B . n A 1 94 ILE 94 90 90 ILE ILE B . n A 1 95 VAL 95 91 91 VAL VAL B . n A 1 96 GLU 96 92 92 GLU GLU B . n A 1 97 SER 97 93 93 SER SER B . n A 1 98 TRP 98 94 94 TRP TRP B . n A 1 99 GLY 99 95 95 GLY GLY B . n A 1 100 THR 100 96 96 THR THR B . n A 1 101 TYR 101 97 97 TYR TYR B . n A 1 102 ARG 102 98 98 ARG ARG B . n A 1 103 PRO 103 99 99 PRO PRO B . n A 1 104 THR 104 100 100 THR THR B . n A 1 105 GLY 105 101 101 GLY GLY B . n A 1 106 THR 106 102 102 THR THR B . n A 1 107 TYR 107 103 103 TYR TYR B . n A 1 108 LYS 108 104 104 LYS LYS B . n A 1 109 GLY 109 105 105 GLY GLY B . n A 1 110 THR 110 106 106 THR THR B . n A 1 111 VAL 111 107 107 VAL VAL B . n A 1 112 THR 112 108 108 THR THR B . n A 1 113 THR 113 109 109 THR THR B . n A 1 114 ASP 114 110 110 ASP ASP B . n A 1 115 GLY 115 111 111 GLY GLY B . n A 1 116 GLY 116 112 112 GLY GLY B . n A 1 117 THR 117 113 113 THR THR B . n A 1 118 TYR 118 114 114 TYR TYR B . n A 1 119 ASP 119 115 115 ASP ASP B . n A 1 120 ILE 120 116 116 ILE ILE B . n A 1 121 TYR 121 117 117 TYR TYR B . n A 1 122 GLU 122 118 118 GLU GLU B . n A 1 123 THR 123 119 119 THR THR B . n A 1 124 TRP 124 120 120 TRP TRP B . n A 1 125 ARG 125 121 121 ARG ARG B . n A 1 126 TYR 126 122 122 TYR TYR B . n A 1 127 ASN 127 123 123 ASN ASN B . n A 1 128 ALA 128 124 124 ALA ALA B . n A 1 129 PRO 129 125 125 PRO PRO B . n A 1 130 SER 130 126 126 SER SER B . n A 1 131 ILE 131 127 127 ILE ILE B . n A 1 132 GLU 132 128 128 GLU GLU B . n A 1 133 GLY 133 129 129 GLY GLY B . n A 1 134 THR 134 130 130 THR THR B . n A 1 135 ARG 135 131 131 ARG ARG B . n A 1 136 THR 136 132 132 THR THR B . n A 1 137 PHE 137 133 133 PHE PHE B . n A 1 138 GLN 138 134 134 GLN GLN B . n A 1 139 ILE 139 135 135 ILE ILE B . n A 1 140 PHE 140 136 136 PHE PHE B . n A 1 141 TRP 141 137 137 TRP TRP B . n A 1 142 SER 142 138 138 SER SER B . n A 1 143 VAL 143 139 139 VAL VAL B . n A 1 144 ARG 144 140 140 ARG ARG B . n A 1 145 GLN 145 141 141 GLN GLN B . n A 1 146 GLN 146 142 142 GLN ALA B . n A 1 147 LYS 147 143 143 LYS LYS B . n A 1 148 ARG 148 144 144 ARG ARG B . n A 1 149 THR 149 145 145 THR THR B . n A 1 150 SER 150 146 146 SER SER B . n A 1 151 GLY 151 147 147 GLY GLY B . n A 1 152 THR 152 148 148 THR THR B . n A 1 153 ILE 153 149 149 ILE ILE B . n A 1 154 THR 154 150 150 THR THR B . n A 1 155 ILE 155 151 151 ILE ILE B . n A 1 156 GLY 156 152 152 GLY GLY B . n A 1 157 ASN 157 153 153 ASN ASN B . n A 1 158 HIS 158 154 154 HIS HIS B . n A 1 159 PHE 159 155 155 PHE PHE B . n A 1 160 ASP 160 156 156 ASP ASP B . n A 1 161 ALA 161 157 157 ALA ALA B . n A 1 162 TRP 162 158 158 TRP TRP B . n A 1 163 ALA 163 159 159 ALA ALA B . n A 1 164 ARG 164 160 160 ARG ARG B . n A 1 165 ALA 165 161 161 ALA ALA B . n A 1 166 GLY 166 162 162 GLY GLY B . n A 1 167 MET 167 163 163 MET MET B . n A 1 168 ASN 168 164 164 ASN ASN B . n A 1 169 LEU 169 165 165 LEU LEU B . n A 1 170 GLY 170 166 166 GLY GLY B . n A 1 171 SER 171 167 167 SER SER B . n A 1 172 HIS 172 168 168 HIS HIS B . n A 1 173 ASP 173 169 169 ASP ASP B . n A 1 174 TYR 174 170 170 TYR TYR B . n A 1 175 GLN 175 171 171 GLN GLN B . n A 1 176 ILE 176 172 172 ILE ILE B . n A 1 177 MET 177 173 173 MET MET B . n A 1 178 ALA 178 174 174 ALA ALA B . n A 1 179 THR 179 175 175 THR THR B . n A 1 180 LYS 180 176 176 LYS LYS B . n A 1 181 GLY 181 177 177 GLY GLY B . n A 1 182 TRP 182 178 178 TRP TRP B . n A 1 183 GLN 183 179 179 GLN GLN B . n A 1 184 SER 184 180 180 SER SER B . n A 1 185 SER 185 181 181 SER SER B . n A 1 186 GLY 186 182 182 GLY GLY B . n A 1 187 SER 187 183 183 SER SER B . n A 1 188 SER 188 184 184 SER SER B . n A 1 189 THR 189 185 185 THR THR B . n A 1 190 VAL 190 186 186 VAL VAL B . n A 1 191 SER 191 187 187 SER SER B . n A 1 192 ILE 192 188 188 ILE ILE B . n A 1 193 SER 193 189 189 SER SER B . n A 1 194 GLU 194 190 190 GLU GLU B . n A 1 195 GLY 195 191 191 GLY GLY B . n A 1 196 GLY 196 192 192 GLY GLY B . n A 1 197 ASN 197 193 193 ASN ASN B . n A 1 198 PRO 198 194 194 PRO PRO B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 195 1 SO4 SO4 B . C 2 SO4 1 196 2 SO4 SO4 B . D 3 NH4 1 197 1 NH4 NH4 B . E 3 NH4 1 198 2 NH4 NH4 B . F 4 HOH 1 199 2 HOH HOH B . F 4 HOH 2 200 3 HOH HOH B . F 4 HOH 3 201 4 HOH HOH B . F 4 HOH 4 202 5 HOH HOH B . F 4 HOH 5 203 6 HOH HOH B . F 4 HOH 6 204 7 HOH HOH B . F 4 HOH 7 205 8 HOH HOH B . F 4 HOH 8 206 9 HOH HOH B . F 4 HOH 9 207 10 HOH HOH B . F 4 HOH 10 208 11 HOH HOH B . F 4 HOH 11 209 12 HOH HOH B . F 4 HOH 12 210 13 HOH HOH B . F 4 HOH 13 211 14 HOH HOH B . F 4 HOH 14 212 15 HOH HOH B . F 4 HOH 15 213 16 HOH HOH B . F 4 HOH 16 214 17 HOH HOH B . F 4 HOH 17 215 18 HOH HOH B . F 4 HOH 18 216 19 HOH HOH B . F 4 HOH 19 217 20 HOH HOH B . F 4 HOH 20 218 21 HOH HOH B . F 4 HOH 21 219 22 HOH HOH B . F 4 HOH 22 220 23 HOH HOH B . F 4 HOH 23 221 24 HOH HOH B . F 4 HOH 24 222 25 HOH HOH B . F 4 HOH 25 223 26 HOH HOH B . F 4 HOH 26 224 27 HOH HOH B . F 4 HOH 27 225 28 HOH HOH B . F 4 HOH 28 226 29 HOH HOH B . F 4 HOH 29 227 30 HOH HOH B . F 4 HOH 30 228 31 HOH HOH B . F 4 HOH 31 229 32 HOH HOH B . F 4 HOH 32 230 34 HOH HOH B . F 4 HOH 33 231 35 HOH HOH B . F 4 HOH 34 232 36 HOH HOH B . F 4 HOH 35 233 37 HOH HOH B . F 4 HOH 36 234 38 HOH HOH B . F 4 HOH 37 235 39 HOH HOH B . F 4 HOH 38 236 40 HOH HOH B . F 4 HOH 39 237 41 HOH HOH B . F 4 HOH 40 238 42 HOH HOH B . F 4 HOH 41 239 43 HOH HOH B . F 4 HOH 42 240 44 HOH HOH B . F 4 HOH 43 241 45 HOH HOH B . F 4 HOH 44 242 46 HOH HOH B . F 4 HOH 45 243 47 HOH HOH B . F 4 HOH 46 244 48 HOH HOH B . F 4 HOH 47 245 49 HOH HOH B . F 4 HOH 48 246 50 HOH HOH B . F 4 HOH 49 247 51 HOH HOH B . F 4 HOH 50 248 54 HOH HOH B . F 4 HOH 51 249 55 HOH HOH B . F 4 HOH 52 250 56 HOH HOH B . F 4 HOH 53 251 58 HOH HOH B . F 4 HOH 54 252 59 HOH HOH B . F 4 HOH 55 253 60 HOH HOH B . F 4 HOH 56 254 61 HOH HOH B . F 4 HOH 57 255 62 HOH HOH B . F 4 HOH 58 256 63 HOH HOH B . F 4 HOH 59 257 64 HOH HOH B . F 4 HOH 60 258 66 HOH HOH B . F 4 HOH 61 259 67 HOH HOH B . F 4 HOH 62 260 68 HOH HOH B . F 4 HOH 63 261 69 HOH HOH B . F 4 HOH 64 262 70 HOH HOH B . F 4 HOH 65 263 71 HOH HOH B . F 4 HOH 66 264 72 HOH HOH B . F 4 HOH 67 265 73 HOH HOH B . F 4 HOH 68 266 74 HOH HOH B . F 4 HOH 69 267 75 HOH HOH B . F 4 HOH 70 268 76 HOH HOH B . F 4 HOH 71 269 77 HOH HOH B . F 4 HOH 72 270 79 HOH HOH B . F 4 HOH 73 271 80 HOH HOH B . F 4 HOH 74 272 81 HOH HOH B . F 4 HOH 75 273 82 HOH HOH B . F 4 HOH 76 274 83 HOH HOH B . F 4 HOH 77 275 84 HOH HOH B . F 4 HOH 78 276 85 HOH HOH B . F 4 HOH 79 277 86 HOH HOH B . F 4 HOH 80 278 88 HOH HOH B . F 4 HOH 81 279 89 HOH HOH B . F 4 HOH 82 280 90 HOH HOH B . F 4 HOH 83 281 91 HOH HOH B . F 4 HOH 84 282 93 HOH HOH B . F 4 HOH 85 283 94 HOH HOH B . F 4 HOH 86 284 95 HOH HOH B . F 4 HOH 87 285 96 HOH HOH B . F 4 HOH 88 286 97 HOH HOH B . F 4 HOH 89 287 98 HOH HOH B . F 4 HOH 90 288 99 HOH HOH B . F 4 HOH 91 289 100 HOH HOH B . F 4 HOH 92 290 101 HOH HOH B . F 4 HOH 93 291 102 HOH HOH B . F 4 HOH 94 292 104 HOH HOH B . F 4 HOH 95 293 105 HOH HOH B . F 4 HOH 96 294 106 HOH HOH B . F 4 HOH 97 295 107 HOH HOH B . F 4 HOH 98 296 108 HOH HOH B . F 4 HOH 99 297 109 HOH HOH B . F 4 HOH 100 298 112 HOH HOH B . F 4 HOH 101 299 113 HOH HOH B . F 4 HOH 102 300 114 HOH HOH B . F 4 HOH 103 301 115 HOH HOH B . F 4 HOH 104 302 116 HOH HOH B . F 4 HOH 105 303 118 HOH HOH B . F 4 HOH 106 304 119 HOH HOH B . F 4 HOH 107 305 120 HOH HOH B . F 4 HOH 108 306 121 HOH HOH B . F 4 HOH 109 307 122 HOH HOH B . F 4 HOH 110 308 123 HOH HOH B . F 4 HOH 111 309 124 HOH HOH B . F 4 HOH 112 310 125 HOH HOH B . F 4 HOH 113 311 126 HOH HOH B . F 4 HOH 114 312 127 HOH HOH B . F 4 HOH 115 313 128 HOH HOH B . F 4 HOH 116 314 129 HOH HOH B . F 4 HOH 117 315 130 HOH HOH B . F 4 HOH 118 316 133 HOH HOH B . F 4 HOH 119 317 135 HOH HOH B . F 4 HOH 120 318 136 HOH HOH B . F 4 HOH 121 319 137 HOH HOH B . F 4 HOH 122 320 138 HOH HOH B . F 4 HOH 123 321 139 HOH HOH B . F 4 HOH 124 322 141 HOH HOH B . F 4 HOH 125 323 142 HOH HOH B . F 4 HOH 126 324 144 HOH HOH B . F 4 HOH 127 325 145 HOH HOH B . F 4 HOH 128 326 146 HOH HOH B . F 4 HOH 129 327 148 HOH HOH B . F 4 HOH 130 328 150 HOH HOH B . F 4 HOH 131 329 151 HOH HOH B . F 4 HOH 132 330 152 HOH HOH B . F 4 HOH 133 331 153 HOH HOH B . F 4 HOH 134 332 154 HOH HOH B . F 4 HOH 135 333 155 HOH HOH B . F 4 HOH 136 334 156 HOH HOH B . F 4 HOH 137 335 158 HOH HOH B . F 4 HOH 138 336 159 HOH HOH B . F 4 HOH 139 337 160 HOH HOH B . F 4 HOH 140 338 162 HOH HOH B . F 4 HOH 141 339 164 HOH HOH B . F 4 HOH 142 340 165 HOH HOH B . F 4 HOH 143 341 167 HOH HOH B . F 4 HOH 144 342 171 HOH HOH B . F 4 HOH 145 343 174 HOH HOH B . F 4 HOH 146 344 176 HOH HOH B . F 4 HOH 147 345 177 HOH HOH B . F 4 HOH 148 346 179 HOH HOH B . F 4 HOH 149 347 180 HOH HOH B . F 4 HOH 150 348 181 HOH HOH B . F 4 HOH 151 349 182 HOH HOH B . F 4 HOH 152 350 191 HOH HOH B . F 4 HOH 153 351 192 HOH HOH B . F 4 HOH 154 352 195 HOH HOH B . F 4 HOH 155 353 196 HOH HOH B . F 4 HOH 156 354 197 HOH HOH B . F 4 HOH 157 355 198 HOH HOH B . F 4 HOH 158 356 200 HOH HOH B . F 4 HOH 159 357 201 HOH HOH B . F 4 HOH 160 358 202 HOH HOH B . F 4 HOH 161 359 203 HOH HOH B . F 4 HOH 162 360 204 HOH HOH B . F 4 HOH 163 361 205 HOH HOH B . F 4 HOH 164 362 206 HOH HOH B . F 4 HOH 165 363 207 HOH HOH B . F 4 HOH 166 364 208 HOH HOH B . F 4 HOH 167 365 209 HOH HOH B . F 4 HOH 168 366 210 HOH HOH B . F 4 HOH 169 367 211 HOH HOH B . F 4 HOH 170 368 212 HOH HOH B . F 4 HOH 171 369 213 HOH HOH B . F 4 HOH 172 370 214 HOH HOH B . F 4 HOH 173 371 215 HOH HOH B . F 4 HOH 174 372 216 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -5.8322 _pdbx_refine_tls.origin_y -10.1120 _pdbx_refine_tls.origin_z 13.7669 _pdbx_refine_tls.T[1][1] -0.0097 _pdbx_refine_tls.T[2][2] -0.0266 _pdbx_refine_tls.T[3][3] -0.0217 _pdbx_refine_tls.T[1][2] 0.0051 _pdbx_refine_tls.T[1][3] 0.0031 _pdbx_refine_tls.T[2][3] 0.0020 _pdbx_refine_tls.L[1][1] 0.2816 _pdbx_refine_tls.L[2][2] 0.4856 _pdbx_refine_tls.L[3][3] 0.7453 _pdbx_refine_tls.L[1][2] -0.1189 _pdbx_refine_tls.L[1][3] -0.2134 _pdbx_refine_tls.L[2][3] 0.2626 _pdbx_refine_tls.S[1][1] -0.0154 _pdbx_refine_tls.S[2][2] -0.0038 _pdbx_refine_tls.S[3][3] 0.0193 _pdbx_refine_tls.S[1][2] 0.0147 _pdbx_refine_tls.S[1][3] -0.0001 _pdbx_refine_tls.S[2][3] 0.0089 _pdbx_refine_tls.S[2][1] 0.0160 _pdbx_refine_tls.S[3][1] 0.0057 _pdbx_refine_tls.S[3][2] -0.0405 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 198 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id B _pdbx_refine_tls_group.beg_auth_seq_id -3 _pdbx_refine_tls_group.end_auth_asym_id B _pdbx_refine_tls_group.end_auth_seq_id 194 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _pdbx_phasing_MR.entry_id 3B5L _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.800 _pdbx_phasing_MR.d_res_low_rotation 33.710 _pdbx_phasing_MR.d_res_high_translation 1.800 _pdbx_phasing_MR.d_res_low_translation 33.710 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK '9.7 W8RSSI' 'Apr 30 2007' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CrystalClear . ? ? ? ? 'data collection' ? ? ? 5 CrystalClear . ? ? ? ? 'data reduction' ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 169 ? ? -97.85 -142.73 2 1 GLN B 179 ? ? 61.13 -166.76 3 1 SER B 180 ? ? 55.90 -153.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLN 6 ? CG ? A GLN 10 CG 2 1 Y 1 B GLN 6 ? CD ? A GLN 10 CD 3 1 Y 1 B GLN 6 ? OE1 ? A GLN 10 OE1 4 1 Y 1 B GLN 6 ? NE2 ? A GLN 10 NE2 5 1 Y 1 B ARG 42 ? CG ? A ARG 46 CG 6 1 Y 1 B ARG 42 ? CD ? A ARG 46 CD 7 1 Y 1 B ARG 42 ? NE ? A ARG 46 NE 8 1 Y 1 B ARG 42 ? CZ ? A ARG 46 CZ 9 1 Y 1 B ARG 42 ? NH1 ? A ARG 46 NH1 10 1 Y 1 B ARG 42 ? NH2 ? A ARG 46 NH2 11 1 Y 1 B LYS 48 ? CG ? A LYS 52 CG 12 1 Y 1 B LYS 48 ? CD ? A LYS 52 CD 13 1 Y 1 B LYS 48 ? CE ? A LYS 52 CE 14 1 Y 1 B LYS 48 ? NZ ? A LYS 52 NZ 15 1 Y 1 B GLN 142 ? CG ? A GLN 146 CG 16 1 Y 1 B GLN 142 ? CD ? A GLN 146 CD 17 1 Y 1 B GLN 142 ? OE1 ? A GLN 146 OE1 18 1 Y 1 B GLN 142 ? NE2 ? A GLN 146 NE2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 NH4 N N N N 236 NH4 HN1 H N N 237 NH4 HN2 H N N 238 NH4 HN3 H N N 239 NH4 HN4 H N N 240 PHE N N N N 241 PHE CA C N S 242 PHE C C N N 243 PHE O O N N 244 PHE CB C N N 245 PHE CG C Y N 246 PHE CD1 C Y N 247 PHE CD2 C Y N 248 PHE CE1 C Y N 249 PHE CE2 C Y N 250 PHE CZ C Y N 251 PHE OXT O N N 252 PHE H H N N 253 PHE H2 H N N 254 PHE HA H N N 255 PHE HB2 H N N 256 PHE HB3 H N N 257 PHE HD1 H N N 258 PHE HD2 H N N 259 PHE HE1 H N N 260 PHE HE2 H N N 261 PHE HZ H N N 262 PHE HXT H N N 263 PRO N N N N 264 PRO CA C N S 265 PRO C C N N 266 PRO O O N N 267 PRO CB C N N 268 PRO CG C N N 269 PRO CD C N N 270 PRO OXT O N N 271 PRO H H N N 272 PRO HA H N N 273 PRO HB2 H N N 274 PRO HB3 H N N 275 PRO HG2 H N N 276 PRO HG3 H N N 277 PRO HD2 H N N 278 PRO HD3 H N N 279 PRO HXT H N N 280 SER N N N N 281 SER CA C N S 282 SER C C N N 283 SER O O N N 284 SER CB C N N 285 SER OG O N N 286 SER OXT O N N 287 SER H H N N 288 SER H2 H N N 289 SER HA H N N 290 SER HB2 H N N 291 SER HB3 H N N 292 SER HG H N N 293 SER HXT H N N 294 SO4 S S N N 295 SO4 O1 O N N 296 SO4 O2 O N N 297 SO4 O3 O N N 298 SO4 O4 O N N 299 THR N N N N 300 THR CA C N S 301 THR C C N N 302 THR O O N N 303 THR CB C N R 304 THR OG1 O N N 305 THR CG2 C N N 306 THR OXT O N N 307 THR H H N N 308 THR H2 H N N 309 THR HA H N N 310 THR HB H N N 311 THR HG1 H N N 312 THR HG21 H N N 313 THR HG22 H N N 314 THR HG23 H N N 315 THR HXT H N N 316 TRP N N N N 317 TRP CA C N S 318 TRP C C N N 319 TRP O O N N 320 TRP CB C N N 321 TRP CG C Y N 322 TRP CD1 C Y N 323 TRP CD2 C Y N 324 TRP NE1 N Y N 325 TRP CE2 C Y N 326 TRP CE3 C Y N 327 TRP CZ2 C Y N 328 TRP CZ3 C Y N 329 TRP CH2 C Y N 330 TRP OXT O N N 331 TRP H H N N 332 TRP H2 H N N 333 TRP HA H N N 334 TRP HB2 H N N 335 TRP HB3 H N N 336 TRP HD1 H N N 337 TRP HE1 H N N 338 TRP HE3 H N N 339 TRP HZ2 H N N 340 TRP HZ3 H N N 341 TRP HH2 H N N 342 TRP HXT H N N 343 TYR N N N N 344 TYR CA C N S 345 TYR C C N N 346 TYR O O N N 347 TYR CB C N N 348 TYR CG C Y N 349 TYR CD1 C Y N 350 TYR CD2 C Y N 351 TYR CE1 C Y N 352 TYR CE2 C Y N 353 TYR CZ C Y N 354 TYR OH O N N 355 TYR OXT O N N 356 TYR H H N N 357 TYR H2 H N N 358 TYR HA H N N 359 TYR HB2 H N N 360 TYR HB3 H N N 361 TYR HD1 H N N 362 TYR HD2 H N N 363 TYR HE1 H N N 364 TYR HE2 H N N 365 TYR HH H N N 366 TYR HXT H N N 367 VAL N N N N 368 VAL CA C N S 369 VAL C C N N 370 VAL O O N N 371 VAL CB C N N 372 VAL CG1 C N N 373 VAL CG2 C N N 374 VAL OXT O N N 375 VAL H H N N 376 VAL H2 H N N 377 VAL HA H N N 378 VAL HB H N N 379 VAL HG11 H N N 380 VAL HG12 H N N 381 VAL HG13 H N N 382 VAL HG21 H N N 383 VAL HG22 H N N 384 VAL HG23 H N N 385 VAL HXT H N N 386 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 NH4 N HN1 sing N N 224 NH4 N HN2 sing N N 225 NH4 N HN3 sing N N 226 NH4 N HN4 sing N N 227 PHE N CA sing N N 228 PHE N H sing N N 229 PHE N H2 sing N N 230 PHE CA C sing N N 231 PHE CA CB sing N N 232 PHE CA HA sing N N 233 PHE C O doub N N 234 PHE C OXT sing N N 235 PHE CB CG sing N N 236 PHE CB HB2 sing N N 237 PHE CB HB3 sing N N 238 PHE CG CD1 doub Y N 239 PHE CG CD2 sing Y N 240 PHE CD1 CE1 sing Y N 241 PHE CD1 HD1 sing N N 242 PHE CD2 CE2 doub Y N 243 PHE CD2 HD2 sing N N 244 PHE CE1 CZ doub Y N 245 PHE CE1 HE1 sing N N 246 PHE CE2 CZ sing Y N 247 PHE CE2 HE2 sing N N 248 PHE CZ HZ sing N N 249 PHE OXT HXT sing N N 250 PRO N CA sing N N 251 PRO N CD sing N N 252 PRO N H sing N N 253 PRO CA C sing N N 254 PRO CA CB sing N N 255 PRO CA HA sing N N 256 PRO C O doub N N 257 PRO C OXT sing N N 258 PRO CB CG sing N N 259 PRO CB HB2 sing N N 260 PRO CB HB3 sing N N 261 PRO CG CD sing N N 262 PRO CG HG2 sing N N 263 PRO CG HG3 sing N N 264 PRO CD HD2 sing N N 265 PRO CD HD3 sing N N 266 PRO OXT HXT sing N N 267 SER N CA sing N N 268 SER N H sing N N 269 SER N H2 sing N N 270 SER CA C sing N N 271 SER CA CB sing N N 272 SER CA HA sing N N 273 SER C O doub N N 274 SER C OXT sing N N 275 SER CB OG sing N N 276 SER CB HB2 sing N N 277 SER CB HB3 sing N N 278 SER OG HG sing N N 279 SER OXT HXT sing N N 280 SO4 S O1 doub N N 281 SO4 S O2 doub N N 282 SO4 S O3 sing N N 283 SO4 S O4 sing N N 284 THR N CA sing N N 285 THR N H sing N N 286 THR N H2 sing N N 287 THR CA C sing N N 288 THR CA CB sing N N 289 THR CA HA sing N N 290 THR C O doub N N 291 THR C OXT sing N N 292 THR CB OG1 sing N N 293 THR CB CG2 sing N N 294 THR CB HB sing N N 295 THR OG1 HG1 sing N N 296 THR CG2 HG21 sing N N 297 THR CG2 HG22 sing N N 298 THR CG2 HG23 sing N N 299 THR OXT HXT sing N N 300 TRP N CA sing N N 301 TRP N H sing N N 302 TRP N H2 sing N N 303 TRP CA C sing N N 304 TRP CA CB sing N N 305 TRP CA HA sing N N 306 TRP C O doub N N 307 TRP C OXT sing N N 308 TRP CB CG sing N N 309 TRP CB HB2 sing N N 310 TRP CB HB3 sing N N 311 TRP CG CD1 doub Y N 312 TRP CG CD2 sing Y N 313 TRP CD1 NE1 sing Y N 314 TRP CD1 HD1 sing N N 315 TRP CD2 CE2 doub Y N 316 TRP CD2 CE3 sing Y N 317 TRP NE1 CE2 sing Y N 318 TRP NE1 HE1 sing N N 319 TRP CE2 CZ2 sing Y N 320 TRP CE3 CZ3 doub Y N 321 TRP CE3 HE3 sing N N 322 TRP CZ2 CH2 doub Y N 323 TRP CZ2 HZ2 sing N N 324 TRP CZ3 CH2 sing Y N 325 TRP CZ3 HZ3 sing N N 326 TRP CH2 HH2 sing N N 327 TRP OXT HXT sing N N 328 TYR N CA sing N N 329 TYR N H sing N N 330 TYR N H2 sing N N 331 TYR CA C sing N N 332 TYR CA CB sing N N 333 TYR CA HA sing N N 334 TYR C O doub N N 335 TYR C OXT sing N N 336 TYR CB CG sing N N 337 TYR CB HB2 sing N N 338 TYR CB HB3 sing N N 339 TYR CG CD1 doub Y N 340 TYR CG CD2 sing Y N 341 TYR CD1 CE1 sing Y N 342 TYR CD1 HD1 sing N N 343 TYR CD2 CE2 doub Y N 344 TYR CD2 HD2 sing N N 345 TYR CE1 CZ doub Y N 346 TYR CE1 HE1 sing N N 347 TYR CE2 CZ sing Y N 348 TYR CE2 HE2 sing N N 349 TYR CZ OH sing N N 350 TYR OH HH sing N N 351 TYR OXT HXT sing N N 352 VAL N CA sing N N 353 VAL N H sing N N 354 VAL N H2 sing N N 355 VAL CA C sing N N 356 VAL CA CB sing N N 357 VAL CA HA sing N N 358 VAL C O doub N N 359 VAL C OXT sing N N 360 VAL CB CG1 sing N N 361 VAL CB CG2 sing N N 362 VAL CB HB sing N N 363 VAL CG1 HG11 sing N N 364 VAL CG1 HG12 sing N N 365 VAL CG1 HG13 sing N N 366 VAL CG2 HG21 sing N N 367 VAL CG2 HG22 sing N N 368 VAL CG2 HG23 sing N N 369 VAL OXT HXT sing N N 370 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'AMMONIUM ION' NH4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1M4W _pdbx_initial_refinement_model.details 'TRUNCATED 1m4w' #