data_3B5O # _entry.id 3B5O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B5O RCSB RCSB045109 WWPDB D_1000045109 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB 377778 . unspecified PDB 3B5P ;Crystal structure of CADD-like protein of unknown function (ZP_00108531.1) from Nostoc punctiforme PCC 73102 at 2.00 A resolution (monoclinic form) ; unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3B5O _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of CADD-like protein of unknown function (ZP_00108531.1) from Nostoc punctiforme PCC 73102 at 1.35 A resolution (hexagonal form) ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3B5O _cell.length_a 91.150 _cell.length_b 91.150 _cell.length_c 67.100 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B5O _symmetry.Int_Tables_number 173 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CADD-like protein of unknown function' 27505.980 1 ? ? ? ? 2 water nat water 18.015 239 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)EFNHLTKQLNQLLAQDYVAFSITENPVVQ(MSE)LSQASFAQIAYV(MSE)QQYSIFPKELVGFTELARRKALG AGWNGVAQELQENIDEE(MSE)GSTTGGISHYTLLADGLEEGLGVAVKNT(MSE)PSVATSKLLRTVLSLFDRQVDYVLG ATYAIEATSIPELTLIVKLVEWLHEGAIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRA(MSE)ID A(MSE)QVWWQELAQEAISSEVVLSTAIAQHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GMEFNHLTKQLNQLLAQDYVAFSITENPVVQMLSQASFAQIAYVMQQYSIFPKELVGFTELARRKALGAGWNGVAQELQE NIDEEMGSTTGGISHYTLLADGLEEGLGVAVKNTMPSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVKLV EWLHEGAIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVWWQELAQEAISSEVVLSTAI AQHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 377778 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLU n 1 4 PHE n 1 5 ASN n 1 6 HIS n 1 7 LEU n 1 8 THR n 1 9 LYS n 1 10 GLN n 1 11 LEU n 1 12 ASN n 1 13 GLN n 1 14 LEU n 1 15 LEU n 1 16 ALA n 1 17 GLN n 1 18 ASP n 1 19 TYR n 1 20 VAL n 1 21 ALA n 1 22 PHE n 1 23 SER n 1 24 ILE n 1 25 THR n 1 26 GLU n 1 27 ASN n 1 28 PRO n 1 29 VAL n 1 30 VAL n 1 31 GLN n 1 32 MSE n 1 33 LEU n 1 34 SER n 1 35 GLN n 1 36 ALA n 1 37 SER n 1 38 PHE n 1 39 ALA n 1 40 GLN n 1 41 ILE n 1 42 ALA n 1 43 TYR n 1 44 VAL n 1 45 MSE n 1 46 GLN n 1 47 GLN n 1 48 TYR n 1 49 SER n 1 50 ILE n 1 51 PHE n 1 52 PRO n 1 53 LYS n 1 54 GLU n 1 55 LEU n 1 56 VAL n 1 57 GLY n 1 58 PHE n 1 59 THR n 1 60 GLU n 1 61 LEU n 1 62 ALA n 1 63 ARG n 1 64 ARG n 1 65 LYS n 1 66 ALA n 1 67 LEU n 1 68 GLY n 1 69 ALA n 1 70 GLY n 1 71 TRP n 1 72 ASN n 1 73 GLY n 1 74 VAL n 1 75 ALA n 1 76 GLN n 1 77 GLU n 1 78 LEU n 1 79 GLN n 1 80 GLU n 1 81 ASN n 1 82 ILE n 1 83 ASP n 1 84 GLU n 1 85 GLU n 1 86 MSE n 1 87 GLY n 1 88 SER n 1 89 THR n 1 90 THR n 1 91 GLY n 1 92 GLY n 1 93 ILE n 1 94 SER n 1 95 HIS n 1 96 TYR n 1 97 THR n 1 98 LEU n 1 99 LEU n 1 100 ALA n 1 101 ASP n 1 102 GLY n 1 103 LEU n 1 104 GLU n 1 105 GLU n 1 106 GLY n 1 107 LEU n 1 108 GLY n 1 109 VAL n 1 110 ALA n 1 111 VAL n 1 112 LYS n 1 113 ASN n 1 114 THR n 1 115 MSE n 1 116 PRO n 1 117 SER n 1 118 VAL n 1 119 ALA n 1 120 THR n 1 121 SER n 1 122 LYS n 1 123 LEU n 1 124 LEU n 1 125 ARG n 1 126 THR n 1 127 VAL n 1 128 LEU n 1 129 SER n 1 130 LEU n 1 131 PHE n 1 132 ASP n 1 133 ARG n 1 134 GLN n 1 135 VAL n 1 136 ASP n 1 137 TYR n 1 138 VAL n 1 139 LEU n 1 140 GLY n 1 141 ALA n 1 142 THR n 1 143 TYR n 1 144 ALA n 1 145 ILE n 1 146 GLU n 1 147 ALA n 1 148 THR n 1 149 SER n 1 150 ILE n 1 151 PRO n 1 152 GLU n 1 153 LEU n 1 154 THR n 1 155 LEU n 1 156 ILE n 1 157 VAL n 1 158 LYS n 1 159 LEU n 1 160 VAL n 1 161 GLU n 1 162 TRP n 1 163 LEU n 1 164 HIS n 1 165 GLU n 1 166 GLY n 1 167 ALA n 1 168 ILE n 1 169 PRO n 1 170 LYS n 1 171 ASP n 1 172 LEU n 1 173 GLN n 1 174 TYR n 1 175 PHE n 1 176 PHE n 1 177 SER n 1 178 LYS n 1 179 HIS n 1 180 LEU n 1 181 ASP n 1 182 GLU n 1 183 TRP n 1 184 GLU n 1 185 ILE n 1 186 GLU n 1 187 HIS n 1 188 GLU n 1 189 ALA n 1 190 GLY n 1 191 LEU n 1 192 ARG n 1 193 THR n 1 194 SER n 1 195 VAL n 1 196 ALA n 1 197 ALA n 1 198 TYR n 1 199 ILE n 1 200 GLN n 1 201 PRO n 1 202 GLU n 1 203 GLU n 1 204 PHE n 1 205 GLY n 1 206 GLU n 1 207 PHE n 1 208 ALA n 1 209 ALA n 1 210 GLY n 1 211 PHE n 1 212 ARG n 1 213 ALA n 1 214 MSE n 1 215 ILE n 1 216 ASP n 1 217 ALA n 1 218 MSE n 1 219 GLN n 1 220 VAL n 1 221 TRP n 1 222 TRP n 1 223 GLN n 1 224 GLU n 1 225 LEU n 1 226 ALA n 1 227 GLN n 1 228 GLU n 1 229 ALA n 1 230 ILE n 1 231 SER n 1 232 SER n 1 233 GLU n 1 234 VAL n 1 235 VAL n 1 236 LEU n 1 237 SER n 1 238 THR n 1 239 ALA n 1 240 ILE n 1 241 ALA n 1 242 GLN n 1 243 HIS n 1 244 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nostoc _entity_src_gen.pdbx_gene_src_gene ZP_00108531.1 _entity_src_gen.gene_src_species 'Nostoc punctiforme' _entity_src_gen.gene_src_strain 'PCC 73102' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc punctiforme' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63737 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 3B5O _struct_ref.pdbx_db_accession 3B5O _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B5O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 244 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3B5O _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 243 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 243 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3B5O # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.2M Mg(OAc)2, 20.0% PEG 8000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2007-09-14 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 0.9797 1.0 3 0.9795 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength_list '1.0000, 0.9797, 0.9795' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 3B5O _reflns.d_resolution_high 1.35 _reflns.d_resolution_low 27.267 _reflns.number_obs 68962 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_netI_over_sigmaI 12.580 _reflns.percent_possible_obs 96.900 _reflns.B_iso_Wilson_estimate 17.08 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.35 1.40 48783 ? 13076 0.823 1.6 ? ? ? ? ? 91.50 1 1 1.40 1.45 44698 ? 11789 0.684 2.0 ? ? ? ? ? 95.90 2 1 1.45 1.52 53368 ? 14084 0.468 3.0 ? ? ? ? ? 96.20 3 1 1.52 1.60 50187 ? 13243 0.313 4.5 ? ? ? ? ? 96.60 4 1 1.60 1.70 50736 ? 13340 0.224 6.1 ? ? ? ? ? 97.20 5 1 1.70 1.83 50930 ? 13384 0.142 9.2 ? ? ? ? ? 97.50 6 1 1.83 2.02 52218 ? 13847 0.085 14.1 ? ? ? ? ? 98.00 7 1 2.02 2.31 50219 ? 13404 0.050 21.9 ? ? ? ? ? 98.40 8 1 2.31 2.91 50106 ? 13578 0.038 27.5 ? ? ? ? ? 98.90 9 1 2.91 27.267 49862 ? 13608 0.027 33.9 ? ? ? ? ? 98.90 10 1 # _refine.entry_id 3B5O _refine.ls_d_res_high 1.350 _refine.ls_d_res_low 27.267 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.970 _refine.ls_number_reflns_obs 68952 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. RESIDUES 181-187 IN CHAIN A ARE DISORDERED AND NOT INCLUDED IN THE MODEL. ; _refine.ls_R_factor_obs 0.156 _refine.ls_R_factor_R_work 0.155 _refine.ls_R_factor_R_free 0.174 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 3484 _refine.B_iso_mean 17.133 _refine.aniso_B[1][1] 0.340 _refine.aniso_B[2][2] 0.340 _refine.aniso_B[3][3] -0.510 _refine.aniso_B[1][2] 0.170 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.972 _refine.pdbx_overall_ESU_R 0.047 _refine.pdbx_overall_ESU_R_Free 0.044 _refine.overall_SU_ML 0.029 _refine.overall_SU_B 1.608 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1773 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 239 _refine_hist.number_atoms_total 2012 _refine_hist.d_res_high 1.350 _refine_hist.d_res_low 27.267 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2046 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1312 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2813 1.259 1.954 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3245 0.945 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 277 5.025 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 90 41.535 25.667 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 345 12.127 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 12.559 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 318 0.076 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2410 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 408 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 509 0.247 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1372 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1098 0.184 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 927 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 190 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 12 0.564 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 35 0.334 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 29 0.160 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1388 2.317 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 522 1.630 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2107 2.948 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 822 4.333 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 706 5.842 11.000 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3803 2.202 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 242 6.638 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3300 4.100 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.35 _refine_ls_shell.d_res_low 1.38 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.030 _refine_ls_shell.number_reflns_R_work 4700 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 235 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4935 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B5O _struct.title 'CRYSTAL STRUCTURE OF A CADD-LIKE PROTEIN OF UNKNOWN FUNCTION (NPUN_F6505) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.35 A RESOLUTION' _struct.pdbx_descriptor 'CADD-like protein of unknown function' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;CADD-LIKE PROTEIN OF UNKNOWN FUNCTION, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3B5O # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? TYR A 19 ? GLY A 0 TYR A 18 1 ? 19 HELX_P HELX_P2 2 VAL A 20 ? SER A 23 ? VAL A 19 SER A 22 5 ? 4 HELX_P HELX_P3 3 VAL A 29 ? LEU A 33 ? VAL A 28 LEU A 32 5 ? 5 HELX_P HELX_P4 4 SER A 37 ? ALA A 69 ? SER A 36 ALA A 68 1 ? 33 HELX_P HELX_P5 5 TRP A 71 ? MSE A 86 ? TRP A 70 MSE A 85 1 ? 16 HELX_P HELX_P6 6 SER A 94 ? GLY A 108 ? SER A 93 GLY A 107 1 ? 15 HELX_P HELX_P7 7 SER A 117 ? ASP A 132 ? SER A 116 ASP A 131 1 ? 16 HELX_P HELX_P8 8 GLN A 134 ? HIS A 164 ? GLN A 133 HIS A 163 1 ? 31 HELX_P HELX_P9 9 PRO A 169 ? ASP A 181 ? PRO A 168 ASP A 180 1 ? 13 HELX_P HELX_P10 10 ALA A 189 ? ALA A 197 ? ALA A 188 ALA A 196 1 ? 9 HELX_P HELX_P11 11 GLN A 200 ? GLU A 202 ? GLN A 199 GLU A 201 5 ? 3 HELX_P HELX_P12 12 GLU A 203 ? SER A 231 ? GLU A 202 SER A 230 1 ? 29 HELX_P HELX_P13 13 SER A 232 ? VAL A 234 ? SER A 231 VAL A 233 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A GLU 3 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A GLN 31 C ? ? ? 1_555 A MSE 32 N ? ? A GLN 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale both ? A MSE 32 C ? ? ? 1_555 A LEU 33 N ? ? A MSE 31 A LEU 32 1_555 ? ? ? ? ? ? ? 1.323 ? covale5 covale both ? A VAL 44 C ? ? ? 1_555 A MSE 45 N ? ? A VAL 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale both ? A MSE 45 C ? ? ? 1_555 A GLN 46 N ? ? A MSE 44 A GLN 45 1_555 ? ? ? ? ? ? ? 1.319 ? covale7 covale both ? A GLU 85 C ? ? ? 1_555 A MSE 86 N ? ? A GLU 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale both ? A MSE 86 C ? ? ? 1_555 A GLY 87 N ? ? A MSE 85 A GLY 86 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale both ? A THR 114 C A ? ? 1_555 A MSE 115 N A ? A THR 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.357 ? covale10 covale both ? A THR 114 C B ? ? 1_555 A MSE 115 N B ? A THR 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.344 ? covale11 covale both ? A MSE 115 C A ? ? 1_555 A PRO 116 N ? ? A MSE 114 A PRO 115 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale both ? A MSE 115 C B ? ? 1_555 A PRO 116 N ? ? A MSE 114 A PRO 115 1_555 ? ? ? ? ? ? ? 1.350 ? covale13 covale both ? A ALA 213 C ? ? ? 1_555 A MSE 214 N ? ? A ALA 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.322 ? covale14 covale both ? A MSE 214 C ? ? ? 1_555 A ILE 215 N ? ? A MSE 213 A ILE 214 1_555 ? ? ? ? ? ? ? 1.328 ? covale15 covale both ? A ALA 217 C ? ? ? 1_555 A MSE 218 N ? ? A ALA 216 A MSE 217 1_555 ? ? ? ? ? ? ? 1.312 ? covale16 covale both ? A MSE 218 C ? ? ? 1_555 A GLN 219 N ? ? A MSE 217 A GLN 218 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3B5O _atom_sites.fract_transf_matrix[1][1] 0.010971 _atom_sites.fract_transf_matrix[1][2] 0.006334 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012668 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014903 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 PHE 4 3 3 PHE PHE A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 HIS 6 5 5 HIS HIS A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 GLN 31 30 30 GLN GLN A . n A 1 32 MSE 32 31 31 MSE MSE A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 GLN 35 34 34 GLN GLN A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 TYR 43 42 42 TYR TYR A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 MSE 45 44 44 MSE MSE A . n A 1 46 GLN 46 45 45 GLN GLN A . n A 1 47 GLN 47 46 46 GLN GLN A . n A 1 48 TYR 48 47 47 TYR TYR A . n A 1 49 SER 49 48 48 SER SER A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 PHE 51 50 50 PHE PHE A . n A 1 52 PRO 52 51 51 PRO PRO A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 ARG 63 62 62 ARG ARG A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 TRP 71 70 70 TRP TRP A . n A 1 72 ASN 72 71 71 ASN ASN A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 GLN 76 75 75 GLN GLN A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 GLN 79 78 78 GLN GLN A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 MSE 86 85 85 MSE MSE A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 TYR 96 95 95 TYR TYR A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 ALA 100 99 99 ALA ALA A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 GLY 108 107 107 GLY GLY A . n A 1 109 VAL 109 108 108 VAL VAL A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 LYS 112 111 111 LYS LYS A . n A 1 113 ASN 113 112 112 ASN ASN A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 MSE 115 114 114 MSE MSE A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 SER 117 116 116 SER SER A . n A 1 118 VAL 118 117 117 VAL VAL A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 SER 121 120 120 SER SER A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 ARG 125 124 124 ARG ARG A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 VAL 127 126 126 VAL VAL A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 SER 129 128 128 SER SER A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 PHE 131 130 130 PHE PHE A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 VAL 135 134 134 VAL VAL A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 TYR 137 136 136 TYR TYR A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 THR 142 141 141 THR THR A . n A 1 143 TYR 143 142 142 TYR TYR A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 GLU 146 145 145 GLU GLU A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 THR 148 147 147 THR THR A . n A 1 149 SER 149 148 148 SER SER A . n A 1 150 ILE 150 149 149 ILE ILE A . n A 1 151 PRO 151 150 150 PRO PRO A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 ILE 156 155 155 ILE ILE A . n A 1 157 VAL 157 156 156 VAL VAL A . n A 1 158 LYS 158 157 157 LYS LYS A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 VAL 160 159 159 VAL VAL A . n A 1 161 GLU 161 160 160 GLU GLU A . n A 1 162 TRP 162 161 161 TRP TRP A . n A 1 163 LEU 163 162 162 LEU LEU A . n A 1 164 HIS 164 163 163 HIS HIS A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 ALA 167 166 166 ALA ALA A . n A 1 168 ILE 168 167 167 ILE ILE A . n A 1 169 PRO 169 168 168 PRO PRO A . n A 1 170 LYS 170 169 169 LYS LYS A . n A 1 171 ASP 171 170 170 ASP ASP A . n A 1 172 LEU 172 171 171 LEU LEU A . n A 1 173 GLN 173 172 172 GLN GLN A . n A 1 174 TYR 174 173 173 TYR TYR A . n A 1 175 PHE 175 174 174 PHE PHE A . n A 1 176 PHE 176 175 175 PHE PHE A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 HIS 179 178 178 HIS HIS A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 ASP 181 180 180 ASP ASP A . n A 1 182 GLU 182 181 ? ? ? A . n A 1 183 TRP 183 182 ? ? ? A . n A 1 184 GLU 184 183 ? ? ? A . n A 1 185 ILE 185 184 ? ? ? A . n A 1 186 GLU 186 185 ? ? ? A . n A 1 187 HIS 187 186 ? ? ? A . n A 1 188 GLU 188 187 ? ? ? A . n A 1 189 ALA 189 188 188 ALA ALA A . n A 1 190 GLY 190 189 189 GLY GLY A . n A 1 191 LEU 191 190 190 LEU LEU A . n A 1 192 ARG 192 191 191 ARG ARG A . n A 1 193 THR 193 192 192 THR THR A . n A 1 194 SER 194 193 193 SER SER A . n A 1 195 VAL 195 194 194 VAL VAL A . n A 1 196 ALA 196 195 195 ALA ALA A . n A 1 197 ALA 197 196 196 ALA ALA A . n A 1 198 TYR 198 197 197 TYR TYR A . n A 1 199 ILE 199 198 198 ILE ILE A . n A 1 200 GLN 200 199 199 GLN GLN A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 GLU 202 201 201 GLU GLU A . n A 1 203 GLU 203 202 202 GLU GLU A . n A 1 204 PHE 204 203 203 PHE PHE A . n A 1 205 GLY 205 204 204 GLY GLY A . n A 1 206 GLU 206 205 205 GLU GLU A . n A 1 207 PHE 207 206 206 PHE PHE A . n A 1 208 ALA 208 207 207 ALA ALA A . n A 1 209 ALA 209 208 208 ALA ALA A . n A 1 210 GLY 210 209 209 GLY GLY A . n A 1 211 PHE 211 210 210 PHE PHE A . n A 1 212 ARG 212 211 211 ARG ARG A . n A 1 213 ALA 213 212 212 ALA ALA A . n A 1 214 MSE 214 213 213 MSE MSE A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 ASP 216 215 215 ASP ASP A . n A 1 217 ALA 217 216 216 ALA ALA A . n A 1 218 MSE 218 217 217 MSE MSE A . n A 1 219 GLN 219 218 218 GLN GLN A . n A 1 220 VAL 220 219 219 VAL VAL A . n A 1 221 TRP 221 220 220 TRP TRP A . n A 1 222 TRP 222 221 221 TRP TRP A . n A 1 223 GLN 223 222 222 GLN GLN A . n A 1 224 GLU 224 223 223 GLU GLU A . n A 1 225 LEU 225 224 224 LEU LEU A . n A 1 226 ALA 226 225 225 ALA ALA A . n A 1 227 GLN 227 226 226 GLN GLN A . n A 1 228 GLU 228 227 227 GLU GLU A . n A 1 229 ALA 229 228 228 ALA ALA A . n A 1 230 ILE 230 229 229 ILE ILE A . n A 1 231 SER 231 230 230 SER SER A . n A 1 232 SER 232 231 231 SER SER A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 VAL 234 233 233 VAL VAL A . n A 1 235 VAL 235 234 234 VAL VAL A . n A 1 236 LEU 236 235 235 LEU LEU A . n A 1 237 SER 237 236 236 SER SER A . n A 1 238 THR 238 237 ? ? ? A . n A 1 239 ALA 239 238 ? ? ? A . n A 1 240 ILE 240 239 ? ? ? A . n A 1 241 ALA 241 240 ? ? ? A . n A 1 242 GLN 242 241 ? ? ? A . n A 1 243 HIS 243 242 ? ? ? A . n A 1 244 HIS 244 243 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 244 1 HOH HOH A . B 2 HOH 2 245 2 HOH HOH A . B 2 HOH 3 246 3 HOH HOH A . B 2 HOH 4 247 4 HOH HOH A . B 2 HOH 5 248 5 HOH HOH A . B 2 HOH 6 249 6 HOH HOH A . B 2 HOH 7 250 7 HOH HOH A . B 2 HOH 8 251 8 HOH HOH A . B 2 HOH 9 252 9 HOH HOH A . B 2 HOH 10 253 10 HOH HOH A . B 2 HOH 11 254 11 HOH HOH A . B 2 HOH 12 255 12 HOH HOH A . B 2 HOH 13 256 13 HOH HOH A . B 2 HOH 14 257 14 HOH HOH A . B 2 HOH 15 258 15 HOH HOH A . B 2 HOH 16 259 16 HOH HOH A . B 2 HOH 17 260 17 HOH HOH A . B 2 HOH 18 261 18 HOH HOH A . B 2 HOH 19 262 19 HOH HOH A . B 2 HOH 20 263 20 HOH HOH A . B 2 HOH 21 264 21 HOH HOH A . B 2 HOH 22 265 22 HOH HOH A . B 2 HOH 23 266 23 HOH HOH A . B 2 HOH 24 267 24 HOH HOH A . B 2 HOH 25 268 25 HOH HOH A . B 2 HOH 26 269 26 HOH HOH A . B 2 HOH 27 270 27 HOH HOH A . B 2 HOH 28 271 28 HOH HOH A . B 2 HOH 29 272 29 HOH HOH A . B 2 HOH 30 273 30 HOH HOH A . B 2 HOH 31 274 31 HOH HOH A . B 2 HOH 32 275 32 HOH HOH A . B 2 HOH 33 276 33 HOH HOH A . B 2 HOH 34 277 34 HOH HOH A . B 2 HOH 35 278 35 HOH HOH A . B 2 HOH 36 279 36 HOH HOH A . B 2 HOH 37 280 37 HOH HOH A . B 2 HOH 38 281 38 HOH HOH A . B 2 HOH 39 282 39 HOH HOH A . B 2 HOH 40 283 40 HOH HOH A . B 2 HOH 41 284 41 HOH HOH A . B 2 HOH 42 285 42 HOH HOH A . B 2 HOH 43 286 43 HOH HOH A . B 2 HOH 44 287 44 HOH HOH A . B 2 HOH 45 288 45 HOH HOH A . B 2 HOH 46 289 46 HOH HOH A . B 2 HOH 47 290 47 HOH HOH A . B 2 HOH 48 291 48 HOH HOH A . B 2 HOH 49 292 49 HOH HOH A . B 2 HOH 50 293 50 HOH HOH A . B 2 HOH 51 294 51 HOH HOH A . B 2 HOH 52 295 52 HOH HOH A . B 2 HOH 53 296 53 HOH HOH A . B 2 HOH 54 297 54 HOH HOH A . B 2 HOH 55 298 55 HOH HOH A . B 2 HOH 56 299 56 HOH HOH A . B 2 HOH 57 300 57 HOH HOH A . B 2 HOH 58 301 58 HOH HOH A . B 2 HOH 59 302 59 HOH HOH A . B 2 HOH 60 303 60 HOH HOH A . B 2 HOH 61 304 61 HOH HOH A . B 2 HOH 62 305 62 HOH HOH A . B 2 HOH 63 306 63 HOH HOH A . B 2 HOH 64 307 64 HOH HOH A . B 2 HOH 65 308 65 HOH HOH A . B 2 HOH 66 309 66 HOH HOH A . B 2 HOH 67 310 67 HOH HOH A . B 2 HOH 68 311 68 HOH HOH A . B 2 HOH 69 312 69 HOH HOH A . B 2 HOH 70 313 70 HOH HOH A . B 2 HOH 71 314 71 HOH HOH A . B 2 HOH 72 315 72 HOH HOH A . B 2 HOH 73 316 73 HOH HOH A . B 2 HOH 74 317 74 HOH HOH A . B 2 HOH 75 318 75 HOH HOH A . B 2 HOH 76 319 76 HOH HOH A . B 2 HOH 77 320 77 HOH HOH A . B 2 HOH 78 321 78 HOH HOH A . B 2 HOH 79 322 79 HOH HOH A . B 2 HOH 80 323 80 HOH HOH A . B 2 HOH 81 324 81 HOH HOH A . B 2 HOH 82 325 82 HOH HOH A . B 2 HOH 83 326 83 HOH HOH A . B 2 HOH 84 327 84 HOH HOH A . B 2 HOH 85 328 85 HOH HOH A . B 2 HOH 86 329 86 HOH HOH A . B 2 HOH 87 330 87 HOH HOH A . B 2 HOH 88 331 88 HOH HOH A . B 2 HOH 89 332 89 HOH HOH A . B 2 HOH 90 333 90 HOH HOH A . B 2 HOH 91 334 91 HOH HOH A . B 2 HOH 92 335 92 HOH HOH A . B 2 HOH 93 336 93 HOH HOH A . B 2 HOH 94 337 94 HOH HOH A . B 2 HOH 95 338 95 HOH HOH A . B 2 HOH 96 339 96 HOH HOH A . B 2 HOH 97 340 97 HOH HOH A . B 2 HOH 98 341 98 HOH HOH A . B 2 HOH 99 342 99 HOH HOH A . B 2 HOH 100 343 100 HOH HOH A . B 2 HOH 101 344 101 HOH HOH A . B 2 HOH 102 345 102 HOH HOH A . B 2 HOH 103 346 103 HOH HOH A . B 2 HOH 104 347 104 HOH HOH A . B 2 HOH 105 348 105 HOH HOH A . B 2 HOH 106 349 106 HOH HOH A . B 2 HOH 107 350 107 HOH HOH A . B 2 HOH 108 351 108 HOH HOH A . B 2 HOH 109 352 109 HOH HOH A . B 2 HOH 110 353 110 HOH HOH A . B 2 HOH 111 354 111 HOH HOH A . B 2 HOH 112 355 112 HOH HOH A . B 2 HOH 113 356 113 HOH HOH A . B 2 HOH 114 357 114 HOH HOH A . B 2 HOH 115 358 115 HOH HOH A . B 2 HOH 116 359 116 HOH HOH A . B 2 HOH 117 360 117 HOH HOH A . B 2 HOH 118 361 118 HOH HOH A . B 2 HOH 119 362 119 HOH HOH A . B 2 HOH 120 363 120 HOH HOH A . B 2 HOH 121 364 121 HOH HOH A . B 2 HOH 122 365 122 HOH HOH A . B 2 HOH 123 366 123 HOH HOH A . B 2 HOH 124 367 124 HOH HOH A . B 2 HOH 125 368 125 HOH HOH A . B 2 HOH 126 369 126 HOH HOH A . B 2 HOH 127 370 127 HOH HOH A . B 2 HOH 128 371 128 HOH HOH A . B 2 HOH 129 372 129 HOH HOH A . B 2 HOH 130 373 130 HOH HOH A . B 2 HOH 131 374 131 HOH HOH A . B 2 HOH 132 375 132 HOH HOH A . B 2 HOH 133 376 133 HOH HOH A . B 2 HOH 134 377 134 HOH HOH A . B 2 HOH 135 378 135 HOH HOH A . B 2 HOH 136 379 136 HOH HOH A . B 2 HOH 137 380 137 HOH HOH A . B 2 HOH 138 381 138 HOH HOH A . B 2 HOH 139 382 139 HOH HOH A . B 2 HOH 140 383 140 HOH HOH A . B 2 HOH 141 384 141 HOH HOH A . B 2 HOH 142 385 142 HOH HOH A . B 2 HOH 143 386 143 HOH HOH A . B 2 HOH 144 387 144 HOH HOH A . B 2 HOH 145 388 145 HOH HOH A . B 2 HOH 146 389 146 HOH HOH A . B 2 HOH 147 390 147 HOH HOH A . B 2 HOH 148 391 148 HOH HOH A . B 2 HOH 149 392 149 HOH HOH A . B 2 HOH 150 393 150 HOH HOH A . B 2 HOH 151 394 151 HOH HOH A . B 2 HOH 152 395 152 HOH HOH A . B 2 HOH 153 396 153 HOH HOH A . B 2 HOH 154 397 154 HOH HOH A . B 2 HOH 155 398 155 HOH HOH A . B 2 HOH 156 399 156 HOH HOH A . B 2 HOH 157 400 157 HOH HOH A . B 2 HOH 158 401 158 HOH HOH A . B 2 HOH 159 402 159 HOH HOH A . B 2 HOH 160 403 160 HOH HOH A . B 2 HOH 161 404 161 HOH HOH A . B 2 HOH 162 405 162 HOH HOH A . B 2 HOH 163 406 163 HOH HOH A . B 2 HOH 164 407 164 HOH HOH A . B 2 HOH 165 408 165 HOH HOH A . B 2 HOH 166 409 166 HOH HOH A . B 2 HOH 167 410 167 HOH HOH A . B 2 HOH 168 411 168 HOH HOH A . B 2 HOH 169 412 169 HOH HOH A . B 2 HOH 170 413 170 HOH HOH A . B 2 HOH 171 414 171 HOH HOH A . B 2 HOH 172 415 172 HOH HOH A . B 2 HOH 173 416 173 HOH HOH A . B 2 HOH 174 417 174 HOH HOH A . B 2 HOH 175 418 175 HOH HOH A . B 2 HOH 176 419 176 HOH HOH A . B 2 HOH 177 420 177 HOH HOH A . B 2 HOH 178 421 178 HOH HOH A . B 2 HOH 179 422 179 HOH HOH A . B 2 HOH 180 423 180 HOH HOH A . B 2 HOH 181 424 181 HOH HOH A . B 2 HOH 182 425 182 HOH HOH A . B 2 HOH 183 426 183 HOH HOH A . B 2 HOH 184 427 184 HOH HOH A . B 2 HOH 185 428 185 HOH HOH A . B 2 HOH 186 429 186 HOH HOH A . B 2 HOH 187 430 187 HOH HOH A . B 2 HOH 188 431 188 HOH HOH A . B 2 HOH 189 432 189 HOH HOH A . B 2 HOH 190 433 190 HOH HOH A . B 2 HOH 191 434 191 HOH HOH A . B 2 HOH 192 435 193 HOH HOH A . B 2 HOH 193 436 194 HOH HOH A . B 2 HOH 194 437 195 HOH HOH A . B 2 HOH 195 438 196 HOH HOH A . B 2 HOH 196 439 197 HOH HOH A . B 2 HOH 197 440 198 HOH HOH A . B 2 HOH 198 441 199 HOH HOH A . B 2 HOH 199 442 200 HOH HOH A . B 2 HOH 200 443 201 HOH HOH A . B 2 HOH 201 444 202 HOH HOH A . B 2 HOH 202 445 203 HOH HOH A . B 2 HOH 203 446 204 HOH HOH A . B 2 HOH 204 447 205 HOH HOH A . B 2 HOH 205 448 206 HOH HOH A . B 2 HOH 206 449 207 HOH HOH A . B 2 HOH 207 450 208 HOH HOH A . B 2 HOH 208 451 209 HOH HOH A . B 2 HOH 209 452 210 HOH HOH A . B 2 HOH 210 453 211 HOH HOH A . B 2 HOH 211 454 212 HOH HOH A . B 2 HOH 212 455 213 HOH HOH A . B 2 HOH 213 456 214 HOH HOH A . B 2 HOH 214 457 215 HOH HOH A . B 2 HOH 215 458 216 HOH HOH A . B 2 HOH 216 459 217 HOH HOH A . B 2 HOH 217 460 218 HOH HOH A . B 2 HOH 218 461 219 HOH HOH A . B 2 HOH 219 462 220 HOH HOH A . B 2 HOH 220 463 221 HOH HOH A . B 2 HOH 221 464 222 HOH HOH A . B 2 HOH 222 465 223 HOH HOH A . B 2 HOH 223 466 224 HOH HOH A . B 2 HOH 224 467 225 HOH HOH A . B 2 HOH 225 468 226 HOH HOH A . B 2 HOH 226 469 227 HOH HOH A . B 2 HOH 227 470 228 HOH HOH A . B 2 HOH 228 471 229 HOH HOH A . B 2 HOH 229 472 230 HOH HOH A . B 2 HOH 230 473 231 HOH HOH A . B 2 HOH 231 474 232 HOH HOH A . B 2 HOH 232 475 233 HOH HOH A . B 2 HOH 233 476 234 HOH HOH A . B 2 HOH 234 477 235 HOH HOH A . B 2 HOH 235 478 236 HOH HOH A . B 2 HOH 236 479 237 HOH HOH A . B 2 HOH 237 480 238 HOH HOH A . B 2 HOH 238 481 239 HOH HOH A . B 2 HOH 239 482 240 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 32 A MSE 31 ? MET SELENOMETHIONINE 3 A MSE 45 A MSE 44 ? MET SELENOMETHIONINE 4 A MSE 86 A MSE 85 ? MET SELENOMETHIONINE 5 A MSE 115 A MSE 114 ? MET SELENOMETHIONINE 6 A MSE 214 A MSE 213 ? MET SELENOMETHIONINE 7 A MSE 218 A MSE 217 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2,3 A,B # _pdbx_struct_assembly_prop.biol_id 2 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 5530 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 91.1500000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 45.5750000000 -0.8660254038 -0.5000000000 0.0000000000 78.9382155550 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 294 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. THE SEQUENCE INFORMATION IS AVAILABLE AT GENBANK WITH ACCESSION CODE ZP_00108531.1 AND FROM THE UNIPROT ARCHIVE (UNIPARC) UNDER ACCESSION ID UPI000038D4FF. ; # _pdbx_entry_details.entry_id 3B5O _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;REMARK 999 REMARK 999 SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 114 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 114 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.518 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.432 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 2 ? CD ? A GLU 3 CD 2 1 Y 1 A GLU 2 ? OE1 ? A GLU 3 OE1 3 1 Y 1 A GLU 2 ? OE2 ? A GLU 3 OE2 4 1 Y 1 A LYS 8 ? NZ ? A LYS 9 NZ 5 1 Y 1 A GLU 83 ? CD ? A GLU 84 CD 6 1 Y 1 A GLU 83 ? OE1 ? A GLU 84 OE1 7 1 Y 1 A GLU 83 ? OE2 ? A GLU 84 OE2 8 1 Y 1 A LYS 111 ? CE ? A LYS 112 CE 9 1 Y 1 A LYS 111 ? NZ ? A LYS 112 NZ 10 1 Y 1 A ASP 131 ? CG ? A ASP 132 CG 11 1 Y 1 A ASP 131 ? OD1 ? A ASP 132 OD1 12 1 Y 1 A ASP 131 ? OD2 ? A ASP 132 OD2 13 1 Y 1 A GLU 164 ? CG ? A GLU 165 CG 14 1 Y 1 A GLU 164 ? CD ? A GLU 165 CD 15 1 Y 1 A GLU 164 ? OE1 ? A GLU 165 OE1 16 1 Y 1 A GLU 164 ? OE2 ? A GLU 165 OE2 17 1 Y 1 A LYS 169 ? CG ? A LYS 170 CG 18 1 Y 1 A LYS 169 ? CD ? A LYS 170 CD 19 1 Y 1 A LYS 169 ? CE ? A LYS 170 CE 20 1 Y 1 A LYS 169 ? NZ ? A LYS 170 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 181 ? A GLU 182 2 1 Y 1 A TRP 182 ? A TRP 183 3 1 Y 1 A GLU 183 ? A GLU 184 4 1 Y 1 A ILE 184 ? A ILE 185 5 1 Y 1 A GLU 185 ? A GLU 186 6 1 Y 1 A HIS 186 ? A HIS 187 7 1 Y 1 A GLU 187 ? A GLU 188 8 1 Y 1 A THR 237 ? A THR 238 9 1 Y 1 A ALA 238 ? A ALA 239 10 1 Y 1 A ILE 239 ? A ILE 240 11 1 Y 1 A ALA 240 ? A ALA 241 12 1 Y 1 A GLN 241 ? A GLN 242 13 1 Y 1 A HIS 242 ? A HIS 243 14 1 Y 1 A HIS 243 ? A HIS 244 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #