data_3B5V # _entry.id 3B5V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B5V RCSB RCSB045116 WWPDB D_1000045116 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-08-25 _pdbx_database_PDB_obs_spr.pdb_id 3HOJ _pdbx_database_PDB_obs_spr.replace_pdb_id 3B5V _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.entry_id 3B5V _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-26 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stoddard, B.L.' 1 'Doyle, L.A.' 2 # _citation.id primary _citation.title 'De novo computational design of retro-aldol enzymes' _citation.journal_abbrev Science _citation.journal_volume 319 _citation.page_first 1387 _citation.page_last 1391 _citation.year 2008 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18323453 _citation.pdbx_database_id_DOI 10.1126/science.1152692 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jiang, L.' 1 primary 'Althoff, E.A.' 2 primary 'Clemente, F.R.' 3 primary 'Doyle, L.' 4 primary 'Rothlisberger, D.' 5 primary 'Zanghellini, A.' 6 primary 'Gallaher, J.L.' 7 primary 'Betker, J.L.' 8 primary 'Tanaka, F.' 9 primary 'Barbas, C.F.' 10 primary 'Hilvert, D.' 11 primary 'Houk, K.N.' 12 primary 'Stoddard, B.L.' 13 primary 'Baker, D.' 14 # _cell.length_a 72.047 _cell.length_b 73.583 _cell.length_c 47.399 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3B5V _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3B5V _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Retroaldolase-22 27473.703 1 4.1.1.48 ? ? ? 2 water nat water 18.015 145 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPRYLKGWLKDVVQLSLRRPSFAASRQRPIISLNERILAFNAANITAIIAGYDRKSPSGLDVERDPIEYSKFMERYAVGL SITTEAKYFNGSYETLRAIASSVSIPILMADFIVKESQIDDAYNLGADTVALIVAILTEAELESLLAYARSYGMEPLIKI NDENDLDIALRIGARFIGIVSADWETLAINKANQAKLISMIPSNVVKVAAFGISARNEIAELRALGVNAFSIHSSLMRNP EKIKEFIL ; _entity_poly.pdbx_seq_one_letter_code_can ;MPRYLKGWLKDVVQLSLRRPSFAASRQRPIISLNERILAFNAANITAIIAGYDRKSPSGLDVERDPIEYSKFMERYAVGL SITTEAKYFNGSYETLRAIASSVSIPILMADFIVKESQIDDAYNLGADTVALIVAILTEAELESLLAYARSYGMEPLIKI NDENDLDIALRIGARFIGIVSADWETLAINKANQAKLISMIPSNVVKVAAFGISARNEIAELRALGVNAFSIHSSLMRNP EKIKEFIL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ARG n 1 4 TYR n 1 5 LEU n 1 6 LYS n 1 7 GLY n 1 8 TRP n 1 9 LEU n 1 10 LYS n 1 11 ASP n 1 12 VAL n 1 13 VAL n 1 14 GLN n 1 15 LEU n 1 16 SER n 1 17 LEU n 1 18 ARG n 1 19 ARG n 1 20 PRO n 1 21 SER n 1 22 PHE n 1 23 ALA n 1 24 ALA n 1 25 SER n 1 26 ARG n 1 27 GLN n 1 28 ARG n 1 29 PRO n 1 30 ILE n 1 31 ILE n 1 32 SER n 1 33 LEU n 1 34 ASN n 1 35 GLU n 1 36 ARG n 1 37 ILE n 1 38 LEU n 1 39 ALA n 1 40 PHE n 1 41 ASN n 1 42 ALA n 1 43 ALA n 1 44 ASN n 1 45 ILE n 1 46 THR n 1 47 ALA n 1 48 ILE n 1 49 ILE n 1 50 ALA n 1 51 GLY n 1 52 TYR n 1 53 ASP n 1 54 ARG n 1 55 LYS n 1 56 SER n 1 57 PRO n 1 58 SER n 1 59 GLY n 1 60 LEU n 1 61 ASP n 1 62 VAL n 1 63 GLU n 1 64 ARG n 1 65 ASP n 1 66 PRO n 1 67 ILE n 1 68 GLU n 1 69 TYR n 1 70 SER n 1 71 LYS n 1 72 PHE n 1 73 MET n 1 74 GLU n 1 75 ARG n 1 76 TYR n 1 77 ALA n 1 78 VAL n 1 79 GLY n 1 80 LEU n 1 81 SER n 1 82 ILE n 1 83 THR n 1 84 THR n 1 85 GLU n 1 86 ALA n 1 87 LYS n 1 88 TYR n 1 89 PHE n 1 90 ASN n 1 91 GLY n 1 92 SER n 1 93 TYR n 1 94 GLU n 1 95 THR n 1 96 LEU n 1 97 ARG n 1 98 ALA n 1 99 ILE n 1 100 ALA n 1 101 SER n 1 102 SER n 1 103 VAL n 1 104 SER n 1 105 ILE n 1 106 PRO n 1 107 ILE n 1 108 LEU n 1 109 MET n 1 110 ALA n 1 111 ASP n 1 112 PHE n 1 113 ILE n 1 114 VAL n 1 115 LYS n 1 116 GLU n 1 117 SER n 1 118 GLN n 1 119 ILE n 1 120 ASP n 1 121 ASP n 1 122 ALA n 1 123 TYR n 1 124 ASN n 1 125 LEU n 1 126 GLY n 1 127 ALA n 1 128 ASP n 1 129 THR n 1 130 VAL n 1 131 ALA n 1 132 LEU n 1 133 ILE n 1 134 VAL n 1 135 ALA n 1 136 ILE n 1 137 LEU n 1 138 THR n 1 139 GLU n 1 140 ALA n 1 141 GLU n 1 142 LEU n 1 143 GLU n 1 144 SER n 1 145 LEU n 1 146 LEU n 1 147 ALA n 1 148 TYR n 1 149 ALA n 1 150 ARG n 1 151 SER n 1 152 TYR n 1 153 GLY n 1 154 MET n 1 155 GLU n 1 156 PRO n 1 157 LEU n 1 158 ILE n 1 159 LYS n 1 160 ILE n 1 161 ASN n 1 162 ASP n 1 163 GLU n 1 164 ASN n 1 165 ASP n 1 166 LEU n 1 167 ASP n 1 168 ILE n 1 169 ALA n 1 170 LEU n 1 171 ARG n 1 172 ILE n 1 173 GLY n 1 174 ALA n 1 175 ARG n 1 176 PHE n 1 177 ILE n 1 178 GLY n 1 179 ILE n 1 180 VAL n 1 181 SER n 1 182 ALA n 1 183 ASP n 1 184 TRP n 1 185 GLU n 1 186 THR n 1 187 LEU n 1 188 ALA n 1 189 ILE n 1 190 ASN n 1 191 LYS n 1 192 ALA n 1 193 ASN n 1 194 GLN n 1 195 ALA n 1 196 LYS n 1 197 LEU n 1 198 ILE n 1 199 SER n 1 200 MET n 1 201 ILE n 1 202 PRO n 1 203 SER n 1 204 ASN n 1 205 VAL n 1 206 VAL n 1 207 LYS n 1 208 VAL n 1 209 ALA n 1 210 ALA n 1 211 PHE n 1 212 GLY n 1 213 ILE n 1 214 SER n 1 215 ALA n 1 216 ARG n 1 217 ASN n 1 218 GLU n 1 219 ILE n 1 220 ALA n 1 221 GLU n 1 222 LEU n 1 223 ARG n 1 224 ALA n 1 225 LEU n 1 226 GLY n 1 227 VAL n 1 228 ASN n 1 229 ALA n 1 230 PHE n 1 231 SER n 1 232 ILE n 1 233 HIS n 1 234 SER n 1 235 SER n 1 236 LEU n 1 237 MET n 1 238 ARG n 1 239 ASN n 1 240 PRO n 1 241 GLU n 1 242 LYS n 1 243 ILE n 1 244 LYS n 1 245 GLU n 1 246 PHE n 1 247 ILE n 1 248 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'artificial gene' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET29b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'The sequence was computationally designed based on Indole-3-glycerol phosphate synthase naturally found in Sulfolobus solfataricus.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3B5V _struct_ref.pdbx_db_accession 3B5V _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPRYLKGWLKDVVQLSLRRPSFAASRQRPIISLNERILAFNAANITAIIAGYDRKSPSGLDVERDPIEYSKFMERYAVGL SITTEAKYFNGSYETLRAIASSVSIPILMADFIVKESQIDDAYNLGADTVALIVAILTEAELESLLAYARSYGMEPLIKI NDENDLDIALRIGARFIGIVSADWETLAINKANQAKLISMIPSNVVKVAAFGISARNEIAELRALGVNAFSIHSSLMRNP EKIKEFIL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B5V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 248 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3B5V _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 248 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 248 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3B5V _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;0.2M Ammonium Sulfate, 0.1M Sodium acetate pH 4.6, 27% PEG400 followed by further equilibration after initial crystallization over 0.2M Ammonium sulfate, 0.1M Sodium acetate pH 4.6, 30% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-05-24 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3B5V _reflns.d_resolution_high 2.200 _reflns.d_resolution_low 36.020 _reflns.number_obs 13187 _reflns.pdbx_scaling_rejects 348 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_netI_over_sigmaI 10.400 _reflns.pdbx_chi_squared 0.970 _reflns.pdbx_redundancy 3.480 _reflns.percent_possible_obs 98.900 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 40.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 3735 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.258 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.150 _reflns_shell.pdbx_redundancy 2.89 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1282 _reflns_shell.percent_possible_all 97.20 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3B5V _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 36.01 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.560 _refine.ls_number_reflns_obs 13184 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_R_work 0.236 _refine.ls_wR_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.293 _refine.ls_wR_factor_R_free 0.267 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 648 _refine.B_iso_mean 25.772 _refine.aniso_B[1][1] -0.340 _refine.aniso_B[2][2] -0.670 _refine.aniso_B[3][3] 1.000 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.918 _refine.correlation_coeff_Fo_to_Fc_free 0.893 _refine.pdbx_overall_ESU_R 0.369 _refine.pdbx_overall_ESU_R_Free 0.268 _refine.overall_SU_ML 0.205 _refine.overall_SU_B 7.971 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1925 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 2070 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 36.01 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1956 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2648 1.305 1.976 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 246 5.568 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 83 34.084 23.614 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 349 18.209 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16 17.683 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 310 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1445 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 885 0.188 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1338 0.303 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 124 0.140 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 36 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.167 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1275 0.490 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1986 0.829 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 776 1.385 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 662 2.276 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 2.257 2.200 988 96.862 898 0.259 59 0.277 . . . . . 'X-RAY DIFFRACTION' 20 2.319 2.257 921 97.720 866 0.269 34 0.344 . . . . . 'X-RAY DIFFRACTION' 20 2.386 2.319 924 97.944 856 0.261 49 0.334 . . . . . 'X-RAY DIFFRACTION' 20 2.460 2.386 899 98.109 831 0.240 51 0.326 . . . . . 'X-RAY DIFFRACTION' 20 2.540 2.460 860 98.372 789 0.268 57 0.337 . . . . . 'X-RAY DIFFRACTION' 20 2.629 2.540 839 98.689 791 0.262 37 0.345 . . . . . 'X-RAY DIFFRACTION' 20 2.728 2.629 804 98.507 748 0.261 44 0.449 . . . . . 'X-RAY DIFFRACTION' 20 2.840 2.728 790 99.114 740 0.249 43 0.339 . . . . . 'X-RAY DIFFRACTION' 20 2.966 2.840 753 99.070 718 0.237 28 0.274 . . . . . 'X-RAY DIFFRACTION' 20 3.110 2.966 715 99.161 685 0.230 24 0.397 . . . . . 'X-RAY DIFFRACTION' 20 3.278 3.110 683 98.975 648 0.224 28 0.260 . . . . . 'X-RAY DIFFRACTION' 20 3.476 3.278 653 99.387 630 0.212 19 0.378 . . . . . 'X-RAY DIFFRACTION' 20 3.716 3.476 622 99.196 581 0.211 36 0.271 . . . . . 'X-RAY DIFFRACTION' 20 4.013 3.716 586 99.488 559 0.204 24 0.260 . . . . . 'X-RAY DIFFRACTION' 20 4.394 4.013 532 99.248 502 0.204 26 0.231 . . . . . 'X-RAY DIFFRACTION' 20 4.911 4.394 489 99.591 463 0.199 24 0.191 . . . . . 'X-RAY DIFFRACTION' 20 5.666 4.911 444 99.324 420 0.237 21 0.352 . . . . . 'X-RAY DIFFRACTION' 20 6.930 5.666 373 99.196 352 0.318 18 0.264 . . . . . 'X-RAY DIFFRACTION' 20 9.757 6.930 306 99.020 288 0.272 15 0.222 . . . . . 'X-RAY DIFFRACTION' 20 73.521 9.757 196 92.857 171 0.267 11 0.279 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3B5V _struct.title 'Crystal Structure of a Novel Engineered Retroaldolase: RA-22' _struct.pdbx_descriptor 'Crystal Structure of a Novel Engineered Retroaldolase: RA-61' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B5V _struct_keywords.text 'TIM barrel, retroaldolase, engineered computationally designed, LYASE' _struct_keywords.pdbx_keywords LYASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 6 ? ARG A 18 ? LYS A 6 ARG A 18 1 ? 13 HELX_P HELX_P2 2 SER A 32 ? ALA A 43 ? SER A 32 ALA A 43 1 ? 12 HELX_P HELX_P3 3 ASP A 65 ? GLU A 74 ? ASP A 65 GLU A 74 1 ? 10 HELX_P HELX_P4 4 SER A 92 ? SER A 101 ? SER A 92 SER A 101 1 ? 10 HELX_P HELX_P5 5 GLU A 116 ? GLY A 126 ? GLU A 116 GLY A 126 1 ? 11 HELX_P HELX_P6 6 THR A 138 ? TYR A 152 ? THR A 138 TYR A 152 1 ? 15 HELX_P HELX_P7 7 ASP A 162 ? ILE A 172 ? ASP A 162 ILE A 172 1 ? 11 HELX_P HELX_P8 8 ASN A 193 ? ILE A 201 ? ASN A 193 ILE A 201 1 ? 9 HELX_P HELX_P9 9 ALA A 215 ? LEU A 225 ? ALA A 215 LEU A 225 1 ? 11 HELX_P HELX_P10 10 HIS A 233 ? ASN A 239 ? HIS A 233 ASN A 239 1 ? 7 HELX_P HELX_P11 11 GLU A 241 ? ILE A 247 ? GLU A 241 ILE A 247 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 48 ? TYR A 52 ? ILE A 48 TYR A 52 A 2 GLY A 79 ? THR A 83 ? GLY A 79 THR A 83 A 3 ILE A 107 ? ALA A 110 ? ILE A 107 ALA A 110 A 4 THR A 129 ? ILE A 133 ? THR A 129 ILE A 133 A 5 LEU A 157 ? ILE A 160 ? LEU A 157 ILE A 160 A 6 PHE A 176 ? VAL A 180 ? PHE A 176 VAL A 180 A 7 VAL A 206 ? ALA A 210 ? VAL A 206 ALA A 210 A 8 ALA A 229 ? ILE A 232 ? ALA A 229 ILE A 232 A 9 ILE A 48 ? TYR A 52 ? ILE A 48 TYR A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 52 ? N TYR A 52 O SER A 81 ? O SER A 81 A 2 3 N LEU A 80 ? N LEU A 80 O LEU A 108 ? O LEU A 108 A 3 4 N MET A 109 ? N MET A 109 O THR A 129 ? O THR A 129 A 4 5 N LEU A 132 ? N LEU A 132 O LEU A 157 ? O LEU A 157 A 5 6 N ILE A 158 ? N ILE A 158 O PHE A 176 ? O PHE A 176 A 6 7 N ILE A 179 ? N ILE A 179 O VAL A 208 ? O VAL A 208 A 7 8 N ALA A 209 ? N ALA A 209 O SER A 231 ? O SER A 231 A 8 9 O PHE A 230 ? O PHE A 230 N ILE A 49 ? N ILE A 49 # _atom_sites.entry_id 3B5V _atom_sites.fract_transf_matrix[1][1] 0.013880 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013590 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021097 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 GLN 194 194 194 GLN GLN A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ILE 198 198 198 ILE ILE A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 MET 200 200 200 MET MET A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 PRO 202 202 202 PRO PRO A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 PHE 211 211 211 PHE PHE A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 ARG 223 223 223 ARG ARG A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 HIS 233 233 233 HIS HIS A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 PHE 246 246 246 PHE PHE A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 LEU 248 248 248 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 249 1 HOH HOH A . B 2 HOH 2 250 2 HOH HOH A . B 2 HOH 3 251 3 HOH HOH A . B 2 HOH 4 252 4 HOH HOH A . B 2 HOH 5 253 5 HOH HOH A . B 2 HOH 6 254 6 HOH HOH A . B 2 HOH 7 255 7 HOH HOH A . B 2 HOH 8 256 8 HOH HOH A . B 2 HOH 9 257 10 HOH HOH A . B 2 HOH 10 258 11 HOH HOH A . B 2 HOH 11 259 12 HOH HOH A . B 2 HOH 12 260 13 HOH HOH A . B 2 HOH 13 261 14 HOH HOH A . B 2 HOH 14 262 15 HOH HOH A . B 2 HOH 15 263 16 HOH HOH A . B 2 HOH 16 264 17 HOH HOH A . B 2 HOH 17 265 18 HOH HOH A . B 2 HOH 18 266 19 HOH HOH A . B 2 HOH 19 267 20 HOH HOH A . B 2 HOH 20 268 21 HOH HOH A . B 2 HOH 21 269 24 HOH HOH A . B 2 HOH 22 270 25 HOH HOH A . B 2 HOH 23 271 26 HOH HOH A . B 2 HOH 24 272 28 HOH HOH A . B 2 HOH 25 273 29 HOH HOH A . B 2 HOH 26 274 30 HOH HOH A . B 2 HOH 27 275 31 HOH HOH A . B 2 HOH 28 276 32 HOH HOH A . B 2 HOH 29 277 33 HOH HOH A . B 2 HOH 30 278 34 HOH HOH A . B 2 HOH 31 279 35 HOH HOH A . B 2 HOH 32 280 36 HOH HOH A . B 2 HOH 33 281 37 HOH HOH A . B 2 HOH 34 282 38 HOH HOH A . B 2 HOH 35 283 39 HOH HOH A . B 2 HOH 36 284 40 HOH HOH A . B 2 HOH 37 285 41 HOH HOH A . B 2 HOH 38 286 42 HOH HOH A . B 2 HOH 39 287 44 HOH HOH A . B 2 HOH 40 288 45 HOH HOH A . B 2 HOH 41 289 46 HOH HOH A . B 2 HOH 42 290 48 HOH HOH A . B 2 HOH 43 291 49 HOH HOH A . B 2 HOH 44 292 50 HOH HOH A . B 2 HOH 45 293 51 HOH HOH A . B 2 HOH 46 294 52 HOH HOH A . B 2 HOH 47 295 53 HOH HOH A . B 2 HOH 48 296 54 HOH HOH A . B 2 HOH 49 297 55 HOH HOH A . B 2 HOH 50 298 57 HOH HOH A . B 2 HOH 51 299 58 HOH HOH A . B 2 HOH 52 300 59 HOH HOH A . B 2 HOH 53 301 60 HOH HOH A . B 2 HOH 54 302 61 HOH HOH A . B 2 HOH 55 303 62 HOH HOH A . B 2 HOH 56 304 63 HOH HOH A . B 2 HOH 57 305 64 HOH HOH A . B 2 HOH 58 306 65 HOH HOH A . B 2 HOH 59 307 67 HOH HOH A . B 2 HOH 60 308 69 HOH HOH A . B 2 HOH 61 309 70 HOH HOH A . B 2 HOH 62 310 71 HOH HOH A . B 2 HOH 63 311 72 HOH HOH A . B 2 HOH 64 312 73 HOH HOH A . B 2 HOH 65 313 74 HOH HOH A . B 2 HOH 66 314 75 HOH HOH A . B 2 HOH 67 315 77 HOH HOH A . B 2 HOH 68 316 78 HOH HOH A . B 2 HOH 69 317 80 HOH HOH A . B 2 HOH 70 318 81 HOH HOH A . B 2 HOH 71 319 82 HOH HOH A . B 2 HOH 72 320 83 HOH HOH A . B 2 HOH 73 321 84 HOH HOH A . B 2 HOH 74 322 87 HOH HOH A . B 2 HOH 75 323 88 HOH HOH A . B 2 HOH 76 324 89 HOH HOH A . B 2 HOH 77 325 92 HOH HOH A . B 2 HOH 78 326 94 HOH HOH A . B 2 HOH 79 327 95 HOH HOH A . B 2 HOH 80 328 97 HOH HOH A . B 2 HOH 81 329 98 HOH HOH A . B 2 HOH 82 330 100 HOH HOH A . B 2 HOH 83 331 101 HOH HOH A . B 2 HOH 84 332 102 HOH HOH A . B 2 HOH 85 333 104 HOH HOH A . B 2 HOH 86 334 105 HOH HOH A . B 2 HOH 87 335 106 HOH HOH A . B 2 HOH 88 336 107 HOH HOH A . B 2 HOH 89 337 108 HOH HOH A . B 2 HOH 90 338 109 HOH HOH A . B 2 HOH 91 339 110 HOH HOH A . B 2 HOH 92 340 111 HOH HOH A . B 2 HOH 93 341 112 HOH HOH A . B 2 HOH 94 342 113 HOH HOH A . B 2 HOH 95 343 114 HOH HOH A . B 2 HOH 96 344 115 HOH HOH A . B 2 HOH 97 345 116 HOH HOH A . B 2 HOH 98 346 117 HOH HOH A . B 2 HOH 99 347 118 HOH HOH A . B 2 HOH 100 348 120 HOH HOH A . B 2 HOH 101 349 121 HOH HOH A . B 2 HOH 102 350 123 HOH HOH A . B 2 HOH 103 351 126 HOH HOH A . B 2 HOH 104 352 127 HOH HOH A . B 2 HOH 105 353 128 HOH HOH A . B 2 HOH 106 354 129 HOH HOH A . B 2 HOH 107 355 130 HOH HOH A . B 2 HOH 108 356 131 HOH HOH A . B 2 HOH 109 357 133 HOH HOH A . B 2 HOH 110 358 134 HOH HOH A . B 2 HOH 111 359 135 HOH HOH A . B 2 HOH 112 360 136 HOH HOH A . B 2 HOH 113 361 137 HOH HOH A . B 2 HOH 114 362 138 HOH HOH A . B 2 HOH 115 363 139 HOH HOH A . B 2 HOH 116 364 140 HOH HOH A . B 2 HOH 117 365 141 HOH HOH A . B 2 HOH 118 366 142 HOH HOH A . B 2 HOH 119 367 143 HOH HOH A . B 2 HOH 120 368 144 HOH HOH A . B 2 HOH 121 369 145 HOH HOH A . B 2 HOH 122 370 146 HOH HOH A . B 2 HOH 123 371 147 HOH HOH A . B 2 HOH 124 372 148 HOH HOH A . B 2 HOH 125 373 149 HOH HOH A . B 2 HOH 126 374 150 HOH HOH A . B 2 HOH 127 375 151 HOH HOH A . B 2 HOH 128 376 152 HOH HOH A . B 2 HOH 129 377 153 HOH HOH A . B 2 HOH 130 378 154 HOH HOH A . B 2 HOH 131 379 155 HOH HOH A . B 2 HOH 132 380 156 HOH HOH A . B 2 HOH 133 381 157 HOH HOH A . B 2 HOH 134 382 158 HOH HOH A . B 2 HOH 135 383 159 HOH HOH A . B 2 HOH 136 384 160 HOH HOH A . B 2 HOH 137 385 161 HOH HOH A . B 2 HOH 138 386 162 HOH HOH A . B 2 HOH 139 387 163 HOH HOH A . B 2 HOH 140 388 164 HOH HOH A . B 2 HOH 141 389 165 HOH HOH A . B 2 HOH 142 390 166 HOH HOH A . B 2 HOH 143 391 167 HOH HOH A . B 2 HOH 144 392 168 HOH HOH A . B 2 HOH 145 393 169 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-22 2 'Structure model' 1 1 2009-08-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_phasing_MR.entry_id 3B5V _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.200 _pdbx_phasing_MR.d_res_low_rotation 36.020 _pdbx_phasing_MR.d_res_high_translation 2.200 _pdbx_phasing_MR.d_res_low_translation 36.020 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.4SSI 'Jan 10 2006' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'collction/data indexing' http://www.msc.com/protein/dtrek.html ? ? 1 d*TREK 9.4SSI 'Jan 10 2006' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data processing' http://www.msc.com/protein/dtrek.html ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk 'molecular replacement' http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC5 refmac_5.2.0019 24/04/2001 program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 d*TREK . ? ? ? ? 'data reduction' ? ? ? 7 d*TREK . ? ? ? ? 'data scaling' ? ? ? 8 PHASER . ? ? ? ? phasing ? ? ? 9 REFMAC 5.2.0019 ? ? ? ? refinement ? ? ? 10 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 108 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 108 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 108 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.01 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 64 ? ? 177.11 119.22 2 1 PHE A 211 ? ? 81.41 124.90 3 1 HIS A 233 ? ? -107.42 -78.48 4 1 ASN A 239 ? ? -154.65 83.69 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #