HEADER FLAVOPROTEIN 29-OCT-07 3B6K TITLE WRBA FROM ESCHERICHIA COLI, BENZOQUINONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVOPROTEIN WRBA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRP REPRESSOR-BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS FLAVOPROTEIN, NADH:QUINONE OXIDOREDUCTASE, FMN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.A.ANDRADE,E.V.PATRIDGE,J.G.FERRY,O.EINSLE REVDAT 4 30-AUG-23 3B6K 1 REMARK REVDAT 3 13-JUL-11 3B6K 1 VERSN REVDAT 2 24-FEB-09 3B6K 1 VERSN REVDAT 1 11-DEC-07 3B6K 0 JRNL AUTH S.L.ANDRADE,E.V.PATRIDGE,J.G.FERRY,O.EINSLE JRNL TITL CRYSTAL STRUCTURE OF THE NADH:QUINONE OXIDOREDUCTASE WRBA JRNL TITL 2 FROM ESCHERICHIA COLI. JRNL REF J.BACTERIOL. V. 189 9101 2007 JRNL REFN ISSN 0021-9193 JRNL PMID 17951395 JRNL DOI 10.1128/JB.01336-07 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 51052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3194 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4336 ; 1.686 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 6.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;33.986 ;24.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;15.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2394 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1659 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2199 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 338 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2019 ; 0.910 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3166 ; 1.460 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1466 ; 2.531 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1160 ; 3.981 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59061 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3B6I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-35 % POLYETHYLENE GLYCOL, PH 7.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.77700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.11950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.11950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.66550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.11950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.11950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.88850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.11950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.11950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.66550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.11950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.11950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.88850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.77700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15590 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 335 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 261 O HOH B 361 1.61 REMARK 500 NH2 ARG B 183 O HOH B 242 2.17 REMARK 500 CE MET B 11 O HOH B 257 2.18 REMARK 500 O HOH A 286 O HOH A 287 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 291 O HOH B 241 7555 1.87 REMARK 500 O HOH A 247 O HOH A 247 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 202 REMARK 610 15P A 203 REMARK 610 15P B 202 REMARK 610 15P B 203 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLQ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLQ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B6I RELATED DB: PDB REMARK 900 WRBA, NATIVE REMARK 900 RELATED ID: 3B6J RELATED DB: PDB REMARK 900 WRBA, NADH COMPLEX REMARK 900 RELATED ID: 3B6M RELATED DB: PDB DBREF 3B6K A 1 198 UNP P0A8G6 WRBA_ECOLI 1 198 DBREF 3B6K B 1 198 UNP P0A8G6 WRBA_ECOLI 1 198 SEQRES 1 A 198 MET ALA LYS VAL LEU VAL LEU TYR TYR SER MET TYR GLY SEQRES 2 A 198 HIS ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SEQRES 3 A 198 SER LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL SEQRES 4 A 198 PRO GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY SEQRES 5 A 198 GLY LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU SEQRES 6 A 198 LEU ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR SEQRES 7 A 198 ARG PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU SEQRES 8 A 198 ASP GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR SEQRES 9 A 198 GLY LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY SEQRES 10 A 198 GLY GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR SEQRES 11 A 198 LEU ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR SEQRES 12 A 198 ALA ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY SEQRES 13 A 198 GLY THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP SEQRES 14 A 198 GLY SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA SEQRES 15 A 198 ARG TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS SEQRES 16 A 198 LEU ASN GLY SEQRES 1 B 198 MET ALA LYS VAL LEU VAL LEU TYR TYR SER MET TYR GLY SEQRES 2 B 198 HIS ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SEQRES 3 B 198 SER LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL SEQRES 4 B 198 PRO GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY SEQRES 5 B 198 GLY LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU SEQRES 6 B 198 LEU ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR SEQRES 7 B 198 ARG PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU SEQRES 8 B 198 ASP GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR SEQRES 9 B 198 GLY LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY SEQRES 10 B 198 GLY GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR SEQRES 11 B 198 LEU ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR SEQRES 12 B 198 ALA ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY SEQRES 13 B 198 GLY THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP SEQRES 14 B 198 GLY SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA SEQRES 15 B 198 ARG TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS SEQRES 16 B 198 LEU ASN GLY HET FMN A 200 31 HET PLQ A 201 8 HET 15P A 202 16 HET 15P A 203 20 HET FMN B 200 31 HET PLQ B 201 8 HET 15P B 202 13 HET 15P B 203 20 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PLQ 1,4-BENZOQUINONE HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN PLQ CYCLOHEXA-2,5-DIENE-1,4-DIONE; QUINONE RING OF THE HETSYN 2 PLQ PLASTOQUINONE 9 HETSYN 15P PEG 1500 FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 PLQ 2(C6 H4 O2) FORMUL 5 15P 4(C69 H140 O35) FORMUL 11 HOH *407(H2 O) HELIX 1 1 GLY A 13 LYS A 28 1 16 HELIX 2 2 PRO A 44 ALA A 51 1 8 HELIX 3 3 PRO A 63 TYR A 69 5 7 HELIX 4 4 SER A 84 ASP A 92 1 9 HELIX 5 5 THR A 94 GLY A 101 1 8 HELIX 6 6 GLY A 119 HIS A 134 1 16 HELIX 7 7 ALA A 145 ASP A 150 5 6 HELIX 8 8 SER A 175 GLY A 198 1 24 HELIX 9 9 GLY B 13 LYS B 28 1 16 HELIX 10 10 PRO B 44 ALA B 51 1 8 HELIX 11 11 PRO B 63 TYR B 69 5 7 HELIX 12 12 SER B 84 ASP B 92 1 9 HELIX 13 13 THR B 94 SER B 100 1 7 HELIX 14 14 GLY B 119 HIS B 134 1 16 HELIX 15 15 ALA B 145 ASP B 150 5 6 HELIX 16 16 SER B 175 GLY B 198 1 24 SHEET 1 A 5 GLU A 33 ARG A 38 0 SHEET 2 A 5 LYS A 3 TYR A 8 1 N VAL A 4 O GLU A 33 SHEET 3 A 5 ALA A 71 ARG A 79 1 O ILE A 73 N LEU A 5 SHEET 4 A 5 LEU A 107 THR A 114 1 O SER A 109 N PHE A 74 SHEET 5 A 5 VAL A 137 ILE A 138 1 O VAL A 137 N ALA A 108 SHEET 1 B 4 ASN A 82 MET A 83 0 SHEET 2 B 4 ALA A 71 ARG A 79 -1 N ARG A 79 O ASN A 82 SHEET 3 B 4 LEU A 107 THR A 114 1 O SER A 109 N PHE A 74 SHEET 4 B 4 THR A 163 ILE A 165 1 O THR A 164 N THR A 114 SHEET 1 C 5 GLU B 33 ARG B 38 0 SHEET 2 C 5 LYS B 3 TYR B 8 1 N VAL B 4 O GLU B 33 SHEET 3 C 5 ALA B 71 ARG B 79 1 O ILE B 73 N LEU B 5 SHEET 4 C 5 LEU B 107 THR B 114 1 O SER B 109 N PHE B 74 SHEET 5 C 5 VAL B 137 ILE B 138 1 O VAL B 137 N ALA B 108 SHEET 1 D 4 ASN B 82 MET B 83 0 SHEET 2 D 4 ALA B 71 ARG B 79 -1 N ARG B 79 O ASN B 82 SHEET 3 D 4 LEU B 107 THR B 114 1 O SER B 109 N PHE B 74 SHEET 4 D 4 THR B 163 ILE B 165 1 O THR B 164 N THR B 114 SITE 1 AC1 23 SER A 10 MET A 11 TYR A 12 GLY A 13 SITE 2 AC1 23 HIS A 14 ILE A 15 PRO A 77 THR A 78 SITE 3 AC1 23 ARG A 79 PHE A 80 SER A 113 THR A 114 SITE 4 AC1 23 GLY A 115 THR A 116 GLY A 117 GLY A 118 SITE 5 AC1 23 PLQ A 201 HOH A 251 HOH A 252 HOH A 253 SITE 6 AC1 23 HOH A 379 ASP B 92 HIS B 133 SITE 1 AC2 23 ASP A 92 HIS A 133 SER B 10 MET B 11 SITE 2 AC2 23 TYR B 12 GLY B 13 HIS B 14 ILE B 15 SITE 3 AC2 23 PRO B 77 THR B 78 ARG B 79 PHE B 80 SITE 4 AC2 23 SER B 113 THR B 114 GLY B 115 THR B 116 SITE 5 AC2 23 GLY B 117 GLY B 118 PLQ B 201 HOH B 271 SITE 6 AC2 23 HOH B 272 HOH B 273 HOH B 399 SITE 1 AC3 7 FMN A 200 HOH A 384 HOH A 385 HOH A 388 SITE 2 AC3 7 HOH A 389 GLY B 95 TRP B 98 SITE 1 AC4 5 TRP A 98 FMN B 200 HOH B 403 HOH B 408 SITE 2 AC4 5 HOH B 410 SITE 1 AC5 9 TYR A 143 ALA A 144 PHE A 149 TRP B 98 SITE 2 AC5 9 ALA B 99 SER B 100 GLY B 101 HOH B 263 SITE 3 AC5 9 HOH B 359 SITE 1 AC6 9 TRP A 98 ALA A 99 SER A 100 GLY A 101 SITE 2 AC6 9 HOH A 370 TYR B 143 ALA B 144 GLN B 146 SITE 3 AC6 9 HOH B 364 SITE 1 AC7 11 GLU A 49 LYS A 50 GLY A 52 GLY A 53 SITE 2 AC7 11 GLY A 105 LEU A 196 ASN A 197 HOH A 327 SITE 3 AC7 11 TYR B 188 LEU B 192 LYS B 195 SITE 1 AC8 6 TYR A 188 LEU A 192 LYS A 195 HOH A 322 SITE 2 AC8 6 HOH A 395 ASN B 197 CRYST1 94.239 94.239 175.554 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005696 0.00000