HEADER HYDROLASE 30-OCT-07 3B7F TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE WITH BNR REPEATS TITLE 2 (REUT_B4987) FROM RALSTONIA EUTROPHA JMP134 AT 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE, BNR REPEAT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 STRAIN: JMP134; SOURCE 5 GENE: YP_299179.1, REUT_B4987; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 7-BLADED BETA-PROPELLER FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3B7F 1 REMARK SEQADV REVDAT 6 24-JUL-19 3B7F 1 REMARK LINK REVDAT 5 25-OCT-17 3B7F 1 REMARK REVDAT 4 13-JUL-11 3B7F 1 VERSN REVDAT 3 23-MAR-11 3B7F 1 TITLE KEYWDS REVDAT 2 24-FEB-09 3B7F 1 VERSN REVDAT 1 13-NOV-07 3B7F 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DOMAIN OF UNKNOWN FUNCTION WITH A JRNL TITL 2 7-BLADED BETA-PROPELLER FOLD (YP_299179.1) FROM RALSTONIA JRNL TITL 3 EUTROPHA JMP134 AT 2.20 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3034 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2116 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4119 ; 1.859 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5086 ; 1.402 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 4.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;29.274 ;22.695 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;12.475 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3400 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 500 ; 0.155 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2187 ; 0.163 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1340 ; 0.168 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1510 ; 0.084 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 361 ; 0.175 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.122 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.220 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.159 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2025 ; 2.060 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 743 ; 0.441 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2982 ; 2.912 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1334 ; 4.819 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1132 ; 6.101 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8293 5.0443 4.4213 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: 0.0058 REMARK 3 T33: -0.0453 T12: 0.0219 REMARK 3 T13: -0.0138 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.8109 L22: 0.4753 REMARK 3 L33: 1.2398 L12: 0.0131 REMARK 3 L13: -0.1770 L23: 0.0824 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.1094 S13: -0.0557 REMARK 3 S21: 0.0360 S22: 0.0195 S23: -0.0191 REMARK 3 S31: -0.0705 S32: 0.2534 S33: 0.0387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. 1,2-ETHANEDIOL FROM THE CRYOPROTECTANT AND CHLORIDE IONS REMARK 3 FROM THE CRYSTALLIZATION SOLUTION HAVE BEEN MODELED REMARK 3 IN THE SOLVENT STRUCTURE. REMARK 3 5. THERE IS AN UNMODELED ELECTRON DENSITY BLOB NEAR REMARK 3 AMINO ACID HIS380. REMARK 4 REMARK 4 3B7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537, 0.9796, 0.9798 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27218 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.583 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.0M LICL, 10.0% PEG 6000, REMARK 280 0.1M TRIS-HCL PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 57.15500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.71500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.35750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.15500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.07250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.07250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.15500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.35750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 57.15500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.71500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 57.15500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.71500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 57.15500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 121.07250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 40.35750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.15500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.35750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 121.07250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 57.15500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 57.15500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 PRO A 11 REMARK 465 HIS A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 GLY A 76 REMARK 465 HIS A 77 REMARK 465 GLU A 106 REMARK 465 GLY A 107 REMARK 465 GLU A 108 REMARK 465 THR A 109 REMARK 465 GLN A 169 REMARK 465 ASP A 170 REMARK 465 GLY A 171 REMARK 465 THR A 172 REMARK 465 VAL A 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 ARG A 162 CD NE CZ NH1 NH2 REMARK 470 LYS A 189 NZ REMARK 470 LYS A 211 CD CE NZ REMARK 470 ARG A 215 CZ NH1 NH2 REMARK 470 ARG A 305 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 187 113.87 -162.55 REMARK 500 ASN A 226 50.85 -99.18 REMARK 500 HIS A 383 115.00 -37.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377390 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 3B7F A 1 393 UNP Q46R99 Q46R99_RALEJ 1 393 SEQADV 3B7F GLY A 0 UNP Q46R99 EXPRESSION TAG SEQRES 1 A 394 GLY MSE THR ALA SER THR ALA PRO GLN THR GLU PRO HIS SEQRES 2 A 394 LYS THR SER ALA PRO GLU SER GLY PRO VAL MSE LEU LEU SEQRES 3 A 394 VAL ALA THR ILE LYS GLY ALA TRP PHE LEU ALA SER ASP SEQRES 4 A 394 PRO ALA ARG ARG THR TRP GLU LEU ARG GLY PRO VAL PHE SEQRES 5 A 394 LEU GLY HIS THR ILE HIS HIS ILE VAL GLN ASP PRO ARG SEQRES 6 A 394 GLU PRO GLU ARG MSE LEU MSE ALA ALA ARG THR GLY HIS SEQRES 7 A 394 LEU GLY PRO THR VAL PHE ARG SER ASP ASP GLY GLY GLY SEQRES 8 A 394 ASN TRP THR GLU ALA THR ARG PRO PRO ALA PHE ASN LYS SEQRES 9 A 394 ALA PRO GLU GLY GLU THR GLY ARG VAL VAL ASP HIS VAL SEQRES 10 A 394 PHE TRP LEU THR PRO GLY HIS ALA SER GLU PRO GLY THR SEQRES 11 A 394 TRP TYR ALA GLY THR SER PRO GLN GLY LEU PHE ARG SER SEQRES 12 A 394 THR ASP HIS GLY ALA SER TRP GLU PRO VAL ALA GLY PHE SEQRES 13 A 394 ASN ASP HIS PRO MSE ARG ARG ALA TRP THR GLY GLY GLU SEQRES 14 A 394 GLN ASP GLY THR PRO ASP GLY PRO LYS MSE HIS SER ILE SEQRES 15 A 394 LEU VAL ASP PRO ARG ASP PRO LYS HIS LEU TYR ILE GLY SEQRES 16 A 394 MSE SER SER GLY GLY VAL PHE GLU SER THR ASP ALA GLY SEQRES 17 A 394 THR ASP TRP LYS PRO LEU ASN ARG GLY CYS ALA ALA ASN SEQRES 18 A 394 PHE LEU PRO ASP PRO ASN VAL GLU PHE GLY HIS ASP PRO SEQRES 19 A 394 HIS CYS VAL VAL GLN HIS PRO ALA ALA PRO ASP ILE LEU SEQRES 20 A 394 TYR GLN GLN ASN HIS CYS GLY ILE TYR ARG MSE ASP ARG SEQRES 21 A 394 ARG GLU GLY VAL TRP LYS ARG ILE GLY ASP ALA MSE PRO SEQRES 22 A 394 ARG GLU VAL GLY ASP ILE GLY PHE PRO ILE VAL VAL HIS SEQRES 23 A 394 GLN ARG ASP PRO ARG THR VAL TRP VAL PHE PRO MSE ASP SEQRES 24 A 394 GLY SER ASP VAL TRP PRO ARG VAL SER PRO GLY GLY LYS SEQRES 25 A 394 PRO ALA VAL TYR VAL THR ARG ASP ALA GLY GLU SER TRP SEQRES 26 A 394 GLN ARG GLN ASP ARG GLY LEU PRO THR ASP GLN ALA TRP SEQRES 27 A 394 LEU THR VAL LYS ARG GLN ALA MSE THR ALA ASP ALA HIS SEQRES 28 A 394 ALA PRO VAL GLY VAL TYR PHE GLY THR THR GLY GLY GLU SEQRES 29 A 394 ILE TRP ALA SER ALA ASP GLU GLY GLU HIS TRP GLN CYS SEQRES 30 A 394 ILE ALA SER HIS LEU PRO HIS ILE TYR ALA VAL GLN SER SEQRES 31 A 394 ALA ARG PRO VAL MODRES 3B7F MSE A 23 MET SELENOMETHIONINE MODRES 3B7F MSE A 69 MET SELENOMETHIONINE MODRES 3B7F MSE A 71 MET SELENOMETHIONINE MODRES 3B7F MSE A 160 MET SELENOMETHIONINE MODRES 3B7F MSE A 178 MET SELENOMETHIONINE MODRES 3B7F MSE A 195 MET SELENOMETHIONINE MODRES 3B7F MSE A 257 MET SELENOMETHIONINE MODRES 3B7F MSE A 271 MET SELENOMETHIONINE MODRES 3B7F MSE A 297 MET SELENOMETHIONINE MODRES 3B7F MSE A 345 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 69 8 HET MSE A 71 8 HET MSE A 160 8 HET MSE A 178 8 HET MSE A 195 8 HET MSE A 257 8 HET MSE A 271 8 HET MSE A 297 8 HET MSE A 345 8 HET CL A 394 1 HET CL A 395 1 HET CL A 396 1 HET CL A 397 1 HET EDO A 398 4 HET EDO A 399 4 HET EDO A 400 4 HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CL 4(CL 1-) FORMUL 6 EDO 17(C2 H6 O2) FORMUL 23 HOH *266(H2 O) HELIX 1 1 VAL A 152 ASP A 157 1 6 HELIX 2 2 MSE A 160 GLY A 166 1 7 HELIX 3 3 ARG A 266 MSE A 271 5 6 SHEET 1 A 4 TRP A 44 VAL A 50 0 SHEET 2 A 4 GLY A 31 SER A 37 -1 N PHE A 34 O ARG A 47 SHEET 3 A 4 MSE A 23 THR A 28 -1 N VAL A 26 O TRP A 33 SHEET 4 A 4 ILE A 384 ALA A 390 -1 O GLN A 388 N LEU A 25 SHEET 1 B 4 THR A 55 GLN A 61 0 SHEET 2 B 4 MSE A 69 ARG A 74 -1 O LEU A 70 N VAL A 60 SHEET 3 B 4 PRO A 80 SER A 85 -1 O THR A 81 N ALA A 73 SHEET 4 B 4 THR A 93 GLU A 94 -1 O THR A 93 N ARG A 84 SHEET 1 C 4 HIS A 115 PRO A 121 0 SHEET 2 C 4 TRP A 130 SER A 135 -1 O GLY A 133 N TRP A 118 SHEET 3 C 4 GLY A 138 SER A 142 -1 O PHE A 140 N ALA A 132 SHEET 4 C 4 GLU A 150 PRO A 151 -1 O GLU A 150 N ARG A 141 SHEET 1 D 4 LYS A 177 VAL A 183 0 SHEET 2 D 4 LEU A 191 SER A 196 -1 O GLY A 194 N HIS A 179 SHEET 3 D 4 GLY A 199 SER A 203 -1 O SER A 203 N LEU A 191 SHEET 4 D 4 LYS A 211 PRO A 212 -1 O LYS A 211 N GLU A 202 SHEET 1 E 4 PRO A 233 GLN A 238 0 SHEET 2 E 4 ILE A 245 ASN A 250 -1 O GLN A 249 N HIS A 234 SHEET 3 E 4 GLY A 253 ASP A 258 -1 O GLY A 253 N ASN A 250 SHEET 4 E 4 TRP A 264 LYS A 265 -1 O LYS A 265 N ARG A 256 SHEET 1 F 4 GLY A 279 VAL A 284 0 SHEET 2 F 4 VAL A 292 PRO A 296 -1 O TRP A 293 N VAL A 283 SHEET 3 F 4 VAL A 314 THR A 317 -1 O TYR A 315 N VAL A 294 SHEET 4 F 4 GLN A 325 GLN A 327 -1 O GLN A 327 N VAL A 314 SHEET 1 G 4 MSE A 345 ALA A 347 0 SHEET 2 G 4 VAL A 355 GLY A 358 -1 O TYR A 356 N THR A 346 SHEET 3 G 4 ILE A 364 SER A 367 -1 O TRP A 365 N PHE A 357 SHEET 4 G 4 GLN A 375 ALA A 378 -1 O GLN A 375 N ALA A 366 LINK C VAL A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N LEU A 24 1555 1555 1.33 LINK C ARG A 68 N MSE A 69 1555 1555 1.35 LINK C MSE A 69 N LEU A 70 1555 1555 1.34 LINK C LEU A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N ALA A 72 1555 1555 1.33 LINK C PRO A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N ARG A 161 1555 1555 1.33 LINK C LYS A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N HIS A 179 1555 1555 1.32 LINK C GLY A 194 N MSE A 195 1555 1555 1.32 LINK C MSE A 195 N SER A 196 1555 1555 1.33 LINK C ARG A 256 N MSE A 257 1555 1555 1.33 LINK C MSE A 257 N ASP A 258 1555 1555 1.32 LINK C ALA A 270 N MSE A 271 1555 1555 1.34 LINK C MSE A 271 N PRO A 272 1555 1555 1.35 LINK C PRO A 296 N MSE A 297 1555 1555 1.33 LINK C MSE A 297 N ASP A 298 1555 1555 1.33 LINK C ALA A 344 N MSE A 345 1555 1555 1.34 LINK C MSE A 345 N THR A 346 1555 1555 1.34 CISPEP 1 GLY A 48 PRO A 49 0 0.91 CISPEP 2 SER A 135 PRO A 136 0 -2.47 CISPEP 3 SER A 196 SER A 197 0 -2.39 CISPEP 4 TRP A 303 PRO A 304 0 -1.31 CISPEP 5 ALA A 351 PRO A 352 0 -2.31 SITE 1 AC1 3 ASN A 220 CYS A 252 ARG A 266 SITE 1 AC2 5 ASN A 102 ARG A 111 PRO A 151 ASN A 156 SITE 2 AC2 5 HOH A 547 SITE 1 AC3 3 ALA A 100 PHE A 101 VAL A 113 SITE 1 AC4 4 THR A 360 HIS A 383 EDO A 412 HOH A 542 SITE 1 AC5 6 PRO A 212 LEU A 213 ASN A 214 ARG A 215 SITE 2 AC5 6 GLU A 228 HOH A 481 SITE 1 AC6 5 GLU A 202 SER A 203 THR A 204 ASP A 205 SITE 2 AC6 5 ASP A 209 SITE 1 AC7 4 ASP A 288 THR A 291 ARG A 318 GLU A 370 SITE 1 AC8 3 ALA A 36 GLU A 45 ARG A 47 SITE 1 AC9 3 ARG A 256 ASP A 258 GLU A 261 SITE 1 BC1 6 THR A 120 LEU A 182 VAL A 183 HOH A 426 SITE 2 BC1 6 HOH A 546 HOH A 558 SITE 1 BC2 6 ARG A 329 ALA A 368 GLU A 372 HIS A 373 SITE 2 BC2 6 HOH A 568 HOH A 640 SITE 1 BC3 5 ARG A 273 GLU A 274 VAL A 275 ASP A 298 SITE 2 BC3 5 EDO A 406 SITE 1 BC4 4 VAL A 275 GLY A 309 EDO A 405 HOH A 632 SITE 1 BC5 4 ARG A 266 HOH A 460 HOH A 468 HOH A 668 SITE 1 BC6 3 ALA A 36 THR A 43 GLU A 45 SITE 1 BC7 6 ARG A 141 SER A 142 THR A 143 ASP A 144 SITE 2 BC7 6 SER A 148 GLU A 150 SITE 1 BC8 6 ASN A 214 GLY A 216 CYS A 217 PRO A 225 SITE 2 BC8 6 VAL A 227 HIS A 231 SITE 1 BC9 2 ARG A 259 ARG A 260 SITE 1 CC1 7 ILE A 29 LYS A 30 LYS A 341 HIS A 383 SITE 2 CC1 7 CL A 397 EDO A 413 HOH A 466 SITE 1 CC2 3 ILE A 29 HIS A 383 EDO A 412 SITE 1 CC3 4 PRO A 352 ASP A 369 GLU A 370 GLU A 372 CRYST1 114.310 114.310 161.430 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006195 0.00000