HEADER UNKNOWN FUNCTION 31-OCT-07 3B83 TITLE COMPUTER-BASED REDESIGN OF A BETA SANDWICH PROTEIN SUGGESTS THAT TITLE 2 EXTENSIVE NEGATIVE DESIGN IS NOT REQUIRED FOR DE NOVO BETA SHEET TITLE 3 DESIGN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEN-D3; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS BETA SHEET, COMPUTATIONAL REDESIGNED PROTEIN, CELL ADHESION, EGF-LIKE KEYWDS 2 DOMAIN, EXTRACELLULAR MATRIX, GLYCOPROTEIN, PHOSPHORYLATION, KEYWDS 3 SECRETED, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR X.HU,H.KE,B.KUHLMAN REVDAT 7 30-AUG-23 3B83 1 REMARK REVDAT 6 05-JUN-13 3B83 1 TITLE VERSN REVDAT 5 09-JUN-09 3B83 1 REVDAT REVDAT 4 24-FEB-09 3B83 1 VERSN REVDAT 3 30-DEC-08 3B83 1 JRNL REVDAT 2 11-NOV-08 3B83 1 REMARK REVDAT 1 04-NOV-08 3B83 0 JRNL AUTH X.HU,H.WANG,H.KE,B.KUHLMAN JRNL TITL COMPUTER-BASED REDESIGN OF A BETA SANDWICH PROTEIN SUGGESTS JRNL TITL 2 THAT EXTENSIVE NEGATIVE DESIGN IS NOT REQUIRED FOR DE NOVO JRNL TITL 3 BETA SHEET DESIGN. JRNL REF STRUCTURE V. 16 1799 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 19081056 JRNL DOI 10.1016/J.STR.2008.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4145 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.505 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3B83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 24.20 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM DIHYDROGEN PHOSPHATE, 0.1 REMARK 280 M POTASSIUM DIHYDROGEN PHOSPHATE, 0.1M MES PH 6.5, 2.2M NACL,100 REMARK 280 MM UREA, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.16450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.16450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.16450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.16450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.16450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.16450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.16450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.16450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 32-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 32-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 138660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -294.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -126.32900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -63.16450 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 63.16450 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -63.16450 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -63.16450 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, G, H REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -63.16450 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 63.16450 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -134.66100 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 -63.16450 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -63.16450 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -134.66100 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 -134.66100 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -126.32900 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 -134.66100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 MET B 0 REMARK 465 GLU B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 465 HIS C 99 REMARK 465 MET D 0 REMARK 465 LEU D 92 REMARK 465 GLU D 93 REMARK 465 HIS D 94 REMARK 465 HIS D 95 REMARK 465 HIS D 96 REMARK 465 HIS D 97 REMARK 465 HIS D 98 REMARK 465 HIS D 99 REMARK 465 HIS E 99 REMARK 465 MET F 0 REMARK 465 GLU F 93 REMARK 465 HIS F 94 REMARK 465 HIS F 95 REMARK 465 HIS F 96 REMARK 465 HIS F 97 REMARK 465 HIS F 98 REMARK 465 HIS F 99 REMARK 465 HIS G 99 REMARK 465 HIS H 94 REMARK 465 HIS H 95 REMARK 465 HIS H 96 REMARK 465 HIS H 97 REMARK 465 HIS H 98 REMARK 465 HIS H 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 56 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -157.81 -118.88 REMARK 500 GLU A 44 138.77 -9.73 REMARK 500 ASN A 64 52.37 38.62 REMARK 500 THR B 13 -161.26 -122.79 REMARK 500 ASP B 40 122.39 177.28 REMARK 500 ASN B 64 52.26 38.09 REMARK 500 SER B 91 -51.90 -127.53 REMARK 500 THR C 13 -164.39 -114.68 REMARK 500 ASP C 40 96.36 -165.22 REMARK 500 ASP C 43 98.83 -60.78 REMARK 500 ASN C 64 57.38 36.90 REMARK 500 HIS C 96 -166.89 -76.32 REMARK 500 HIS C 97 -146.17 -50.31 REMARK 500 GLN D 2 113.46 -170.06 REMARK 500 PRO D 4 -151.62 -79.05 REMARK 500 PHE D 5 160.92 167.11 REMARK 500 ASN D 6 32.24 70.97 REMARK 500 ASN D 11 59.59 26.67 REMARK 500 THR D 13 -153.17 -101.51 REMARK 500 ALA D 17 149.95 -171.73 REMARK 500 ASP D 40 88.38 -157.37 REMARK 500 ASN D 64 78.85 30.56 REMARK 500 THR E 13 -156.86 -126.14 REMARK 500 ASN E 39 36.81 -82.08 REMARK 500 ASP E 40 98.13 170.94 REMARK 500 HIS E 97 -127.58 -30.57 REMARK 500 PRO F 4 -162.56 -73.52 REMARK 500 THR F 13 -158.39 -120.48 REMARK 500 PRO F 24 -116.94 -50.40 REMARK 500 ILE F 25 42.80 -174.73 REMARK 500 PRO F 27 104.83 -58.71 REMARK 500 GLU F 29 38.93 -84.36 REMARK 500 ASN F 64 52.25 36.18 REMARK 500 ASN F 75 69.88 -150.84 REMARK 500 PRO G 27 151.06 -44.70 REMARK 500 ASN G 39 38.53 -80.63 REMARK 500 ASN H 11 46.31 37.78 REMARK 500 THR H 13 -161.61 -123.47 REMARK 500 ASN H 75 80.04 -151.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 3B83 A 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 B 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 C 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 D 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 E 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 F 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 G 0 99 PDB 3B83 3B83 0 99 DBREF 3B83 H 0 99 PDB 3B83 3B83 0 99 SEQRES 1 A 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 A 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 A 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 A 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 A 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 A 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 A 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 A 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 B 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 B 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 B 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 B 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 B 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 B 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 B 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 C 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 C 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 C 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 C 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 C 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 C 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 C 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 D 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 D 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 D 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 D 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 D 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 D 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 D 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 E 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 E 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 E 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 E 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 E 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 E 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 E 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 F 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 F 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 F 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 F 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 F 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 F 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 F 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 G 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 G 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 G 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 G 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 G 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 G 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 G 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 G 100 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 H 100 MET LEU GLN PRO PRO PHE ASN ILE LYS VAL THR ASN ILE SEQRES 2 H 100 THR LEU THR THR ALA VAL VAL THR TRP GLN PRO PRO ILE SEQRES 3 H 100 LEU PRO ILE GLU GLY ILE LEU VAL THR PHE GLY ARG LYS SEQRES 4 H 100 ASN ASP PRO SER ASP GLU THR THR VAL ASP LEU THR SER SEQRES 5 H 100 SER ILE THR SER LEU THR LEU THR ASN LEU GLU PRO ASN SEQRES 6 H 100 THR THR TYR GLU ILE ARG ILE VAL ALA ARG ASN GLY GLN SEQRES 7 H 100 GLN TYR SER PRO PRO VAL SER THR THR PHE THR THR GLY SEQRES 8 H 100 SER LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 9 HOH *47(H2 O) SHEET 1 A 6 PHE A 5 THR A 10 0 SHEET 2 A 6 ALA A 17 GLN A 22 -1 O THR A 20 N LYS A 8 SHEET 3 A 6 ILE A 53 LEU A 58 -1 O LEU A 56 N VAL A 19 SHEET 4 A 6 ILE E 53 LEU E 58 -1 O THR E 57 N SER A 55 SHEET 5 A 6 ALA E 17 GLN E 22 -1 N VAL E 19 O LEU E 56 SHEET 6 A 6 PHE E 5 THR E 10 -1 N THR E 10 O VAL E 18 SHEET 1 B 4 THR A 45 LEU A 49 0 SHEET 2 B 4 GLY A 30 ARG A 37 -1 N ILE A 31 O LEU A 49 SHEET 3 B 4 THR A 66 ASN A 75 -1 O VAL A 72 N LEU A 32 SHEET 4 B 4 GLN A 78 TYR A 79 -1 O GLN A 78 N ASN A 75 SHEET 1 C 4 THR A 45 LEU A 49 0 SHEET 2 C 4 GLY A 30 ARG A 37 -1 N ILE A 31 O LEU A 49 SHEET 3 C 4 THR A 66 ASN A 75 -1 O VAL A 72 N LEU A 32 SHEET 4 C 4 VAL A 83 THR A 88 -1 O PHE A 87 N TYR A 67 SHEET 1 D 6 PHE B 5 THR B 10 0 SHEET 2 D 6 ALA B 17 GLN B 22 -1 O VAL B 18 N THR B 10 SHEET 3 D 6 ILE B 53 LEU B 58 -1 O LEU B 56 N VAL B 19 SHEET 4 D 6 ILE G 53 LEU G 58 -1 O THR G 54 N THR B 57 SHEET 5 D 6 ALA G 17 GLN G 22 -1 N ALA G 17 O LEU G 58 SHEET 6 D 6 PHE G 5 THR G 10 -1 N THR G 10 O VAL G 18 SHEET 1 E 4 THR B 45 LEU B 49 0 SHEET 2 E 4 GLY B 30 ARG B 37 -1 N ILE B 31 O LEU B 49 SHEET 3 E 4 THR B 66 ASN B 75 -1 O ARG B 70 N THR B 34 SHEET 4 E 4 GLN B 78 TYR B 79 -1 O GLN B 78 N ASN B 75 SHEET 1 F 4 THR B 45 LEU B 49 0 SHEET 2 F 4 GLY B 30 ARG B 37 -1 N ILE B 31 O LEU B 49 SHEET 3 F 4 THR B 66 ASN B 75 -1 O ARG B 70 N THR B 34 SHEET 4 F 4 VAL B 83 THR B 88 -1 O PHE B 87 N TYR B 67 SHEET 1 G 6 PHE C 5 THR C 10 0 SHEET 2 G 6 ALA C 17 GLN C 22 -1 O VAL C 18 N THR C 10 SHEET 3 G 6 ILE C 53 LEU C 58 -1 O LEU C 58 N ALA C 17 SHEET 4 G 6 ILE F 53 LEU F 58 -1 O THR F 54 N THR C 57 SHEET 5 G 6 ALA F 17 GLN F 22 -1 N ALA F 17 O LEU F 58 SHEET 6 G 6 PHE F 5 THR F 10 -1 N LYS F 8 O THR F 20 SHEET 1 H 4 THR C 45 LEU C 49 0 SHEET 2 H 4 GLY C 30 ARG C 37 -1 N ILE C 31 O LEU C 49 SHEET 3 H 4 THR C 66 ASN C 75 -1 O ARG C 70 N THR C 34 SHEET 4 H 4 GLN C 78 TYR C 79 -1 O GLN C 78 N ASN C 75 SHEET 1 I 4 THR C 45 LEU C 49 0 SHEET 2 I 4 GLY C 30 ARG C 37 -1 N ILE C 31 O LEU C 49 SHEET 3 I 4 THR C 66 ASN C 75 -1 O ARG C 70 N THR C 34 SHEET 4 I 4 VAL C 83 THR C 88 -1 O PHE C 87 N TYR C 67 SHEET 1 J 6 PHE D 5 THR D 10 0 SHEET 2 J 6 ALA D 17 GLN D 22 -1 O VAL D 18 N THR D 10 SHEET 3 J 6 ILE D 53 LEU D 58 -1 O LEU D 58 N ALA D 17 SHEET 4 J 6 ILE H 53 LEU H 58 -1 O THR H 57 N THR D 54 SHEET 5 J 6 ALA H 17 GLN H 22 -1 N VAL H 19 O LEU H 56 SHEET 6 J 6 PHE H 5 THR H 10 -1 N LYS H 8 O THR H 20 SHEET 1 K 4 THR D 45 LEU D 49 0 SHEET 2 K 4 GLY D 30 ARG D 37 -1 N ILE D 31 O LEU D 49 SHEET 3 K 4 THR D 66 ASN D 75 -1 O VAL D 72 N LEU D 32 SHEET 4 K 4 GLN D 78 TYR D 79 -1 O GLN D 78 N ASN D 75 SHEET 1 L 4 THR D 45 LEU D 49 0 SHEET 2 L 4 GLY D 30 ARG D 37 -1 N ILE D 31 O LEU D 49 SHEET 3 L 4 THR D 66 ASN D 75 -1 O VAL D 72 N LEU D 32 SHEET 4 L 4 VAL D 83 THR D 88 -1 O THR D 85 N ILE D 69 SHEET 1 M 4 THR E 45 LEU E 49 0 SHEET 2 M 4 GLY E 30 ARG E 37 -1 N ILE E 31 O LEU E 49 SHEET 3 M 4 THR E 66 ASN E 75 -1 O ARG E 70 N THR E 34 SHEET 4 M 4 GLN E 78 TYR E 79 -1 O GLN E 78 N ASN E 75 SHEET 1 N 4 THR E 45 LEU E 49 0 SHEET 2 N 4 GLY E 30 ARG E 37 -1 N ILE E 31 O LEU E 49 SHEET 3 N 4 THR E 66 ASN E 75 -1 O ARG E 70 N THR E 34 SHEET 4 N 4 VAL E 83 THR E 88 -1 O PHE E 87 N TYR E 67 SHEET 1 O 4 THR F 45 LEU F 49 0 SHEET 2 O 4 ILE F 31 ARG F 37 -1 N ILE F 31 O LEU F 49 SHEET 3 O 4 THR F 66 ALA F 73 -1 O VAL F 72 N LEU F 32 SHEET 4 O 4 VAL F 83 THR F 88 -1 O THR F 85 N ILE F 69 SHEET 1 P 4 THR G 45 LEU G 49 0 SHEET 2 P 4 GLY G 30 ARG G 37 -1 N ILE G 31 O LEU G 49 SHEET 3 P 4 THR G 66 ASN G 75 -1 O VAL G 72 N LEU G 32 SHEET 4 P 4 GLN G 78 TYR G 79 -1 O GLN G 78 N ASN G 75 SHEET 1 Q 4 THR G 45 LEU G 49 0 SHEET 2 Q 4 GLY G 30 ARG G 37 -1 N ILE G 31 O LEU G 49 SHEET 3 Q 4 THR G 66 ASN G 75 -1 O VAL G 72 N LEU G 32 SHEET 4 Q 4 VAL G 83 THR G 88 -1 O PHE G 87 N TYR G 67 SHEET 1 R 4 THR H 45 LEU H 49 0 SHEET 2 R 4 GLY H 30 ARG H 37 -1 N PHE H 35 O THR H 45 SHEET 3 R 4 THR H 66 ARG H 74 -1 O ARG H 74 N GLY H 30 SHEET 4 R 4 VAL H 83 THR H 88 -1 O PHE H 87 N TYR H 67 CRYST1 126.329 126.329 134.661 90.00 90.00 90.00 P 4 21 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007426 0.00000