data_3B87 # _entry.id 3B87 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3B87 pdb_00003b87 10.2210/pdb3b87/pdb RCSB RCSB045200 ? ? WWPDB D_1000045200 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1OOH Wild-type unspecified PDB 3B86 'LUSH mutant' unspecified PDB 3B7A 'LUSH mutant' unspecified PDB 1OOF Wild-type unspecified PDB 1OOG Wild-Type unspecified PDB 1OOT . unspecified PDB 1T14 . unspecified # _pdbx_database_status.entry_id 3B87 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jones, D.N.M.' 1 'Thode, A.B.' 2 # _citation.id primary _citation.title ;The role of multiple hydrogen-bonding groups in specific alcohol binding sites in proteins: insights from structural studies of LUSH. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 376 _citation.page_first 1360 _citation.page_last 1376 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18234222 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.12.063 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thode, A.B.' 1 ? primary 'Kruse, S.W.' 2 ? primary 'Nix, J.C.' 3 ? primary 'Jones, D.N.' 4 ? # _cell.length_a 42.662 _cell.length_b 45.702 _cell.length_c 114.523 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3B87 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3B87 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'General odorant-binding protein lush' 14185.482 2 ? 'Threonine 57 to Alanine' 'Chain A' ? 2 non-polymer syn 'ACETATE ION' 59.044 3 ? 'Threonine 57 to Alanine' 'Chain B' ? 3 non-polymer syn 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL 370.436 1 ? ? ? ? 4 water nat water 18.015 188 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGAVNKKGEFNAPKALAQLPHLVPPE MMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQFMWP ; _entity_poly.pdbx_seq_one_letter_code_can ;MTMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGAVNKKGEFNAPKALAQLPHLVPPE MMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQFMWP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 MET n 1 4 GLU n 1 5 GLN n 1 6 PHE n 1 7 LEU n 1 8 THR n 1 9 SER n 1 10 LEU n 1 11 ASP n 1 12 MET n 1 13 ILE n 1 14 ARG n 1 15 SER n 1 16 GLY n 1 17 CYS n 1 18 ALA n 1 19 PRO n 1 20 LYS n 1 21 PHE n 1 22 LYS n 1 23 LEU n 1 24 LYS n 1 25 THR n 1 26 GLU n 1 27 ASP n 1 28 LEU n 1 29 ASP n 1 30 ARG n 1 31 LEU n 1 32 ARG n 1 33 VAL n 1 34 GLY n 1 35 ASP n 1 36 PHE n 1 37 ASN n 1 38 PHE n 1 39 PRO n 1 40 PRO n 1 41 SER n 1 42 GLN n 1 43 ASP n 1 44 LEU n 1 45 MET n 1 46 CYS n 1 47 TYR n 1 48 THR n 1 49 LYS n 1 50 CYS n 1 51 VAL n 1 52 SER n 1 53 LEU n 1 54 MET n 1 55 ALA n 1 56 GLY n 1 57 ALA n 1 58 VAL n 1 59 ASN n 1 60 LYS n 1 61 LYS n 1 62 GLY n 1 63 GLU n 1 64 PHE n 1 65 ASN n 1 66 ALA n 1 67 PRO n 1 68 LYS n 1 69 ALA n 1 70 LEU n 1 71 ALA n 1 72 GLN n 1 73 LEU n 1 74 PRO n 1 75 HIS n 1 76 LEU n 1 77 VAL n 1 78 PRO n 1 79 PRO n 1 80 GLU n 1 81 MET n 1 82 MET n 1 83 GLU n 1 84 MET n 1 85 SER n 1 86 ARG n 1 87 LYS n 1 88 SER n 1 89 VAL n 1 90 GLU n 1 91 ALA n 1 92 CYS n 1 93 ARG n 1 94 ASP n 1 95 THR n 1 96 HIS n 1 97 LYS n 1 98 GLN n 1 99 PHE n 1 100 LYS n 1 101 GLU n 1 102 SER n 1 103 CYS n 1 104 GLU n 1 105 ARG n 1 106 VAL n 1 107 TYR n 1 108 GLN n 1 109 THR n 1 110 ALA n 1 111 LYS n 1 112 CYS n 1 113 PHE n 1 114 SER n 1 115 GLU n 1 116 ASN n 1 117 ALA n 1 118 ASP n 1 119 GLY n 1 120 GLN n 1 121 PHE n 1 122 MET n 1 123 TRP n 1 124 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene 'lush, Obp76a, Obp76c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OB76A_DROME _struct_ref.pdbx_db_accession O02372 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKALAQLPHLVPPE MMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQFMWP ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3B87 A 1 ? 124 ? O02372 30 ? 153 ? 1 124 2 1 3B87 B 1 ? 124 ? O02372 30 ? 153 ? 1 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B87 ALA A 57 ? UNP O02372 THR 86 'engineered mutation' 57 1 2 3B87 ALA B 57 ? UNP O02372 THR 86 'engineered mutation' 57 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PE8 non-polymer . 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL ? 'C16 H34 O9' 370.436 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3B87 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2005-11-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.28 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 # _reflns.entry_id 3B87 _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 45.700 _reflns.number_obs 18369 _reflns.pdbx_scaling_rejects 2548 _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_netI_over_sigmaI 8.000 _reflns.pdbx_chi_squared 0.960 _reflns.pdbx_redundancy 6.790 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 11933 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.479 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.350 _reflns_shell.pdbx_redundancy 6.48 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1789 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3B87 _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 40.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.910 _refine.ls_number_reflns_obs 15808 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.229 _refine.ls_percent_reflns_R_free 10.100 _refine.ls_number_reflns_R_free 1591 _refine.B_iso_mean 20.090 _refine.aniso_B[1][1] 0.270 _refine.aniso_B[2][2] -0.120 _refine.aniso_B[3][3] -0.140 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.pdbx_overall_ESU_R 0.248 _refine.pdbx_overall_ESU_R_Free 0.187 _refine.overall_SU_ML 0.118 _refine.overall_SU_B 4.194 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1956 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 2181 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2072 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2783 1.171 1.983 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 254 4.826 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 92 36.153 24.565 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 377 13.590 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 14.487 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 288 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1564 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1017 0.200 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1422 0.296 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 125 0.154 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 75 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 31 0.187 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1314 1.500 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2055 2.209 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 839 2.570 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 728 3.890 4.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1020 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.206 _refine_ls_shell.R_factor_R_free 0.272 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1134 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B87 _struct.title 'Complex of T57A Substituted Droposphila LUSH protein with Butanol' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B87 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;Odorant binding protein, alcohol binding protein, Behavior, Olfaction, Pheromone response, Pheromone-binding, Secreted, Sensory transduction, Transport, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 2 ? ALA A 18 ? THR A 2 ALA A 18 1 ? 17 HELX_P HELX_P2 2 PRO A 19 ? PHE A 21 ? PRO A 19 PHE A 21 5 ? 3 HELX_P HELX_P3 3 LYS A 24 ? VAL A 33 ? LYS A 24 VAL A 33 1 ? 10 HELX_P HELX_P4 4 SER A 41 ? GLY A 56 ? SER A 41 GLY A 56 1 ? 16 HELX_P HELX_P5 5 ASN A 65 ? LEU A 73 ? ASN A 65 LEU A 73 1 ? 9 HELX_P HELX_P6 6 PRO A 74 ? LEU A 76 ? PRO A 74 LEU A 76 5 ? 3 HELX_P HELX_P7 7 PRO A 78 ? GLU A 80 ? PRO A 78 GLU A 80 5 ? 3 HELX_P HELX_P8 8 MET A 81 ? CYS A 92 ? MET A 81 CYS A 92 1 ? 12 HELX_P HELX_P9 9 ASP A 94 ? PHE A 99 ? ASP A 94 PHE A 99 5 ? 6 HELX_P HELX_P10 10 GLU A 101 ? ALA A 117 ? GLU A 101 ALA A 117 1 ? 17 HELX_P HELX_P11 11 THR B 2 ? ALA B 18 ? THR B 2 ALA B 18 1 ? 17 HELX_P HELX_P12 12 PRO B 19 ? PHE B 21 ? PRO B 19 PHE B 21 5 ? 3 HELX_P HELX_P13 13 LYS B 24 ? VAL B 33 ? LYS B 24 VAL B 33 1 ? 10 HELX_P HELX_P14 14 SER B 41 ? ALA B 55 ? SER B 41 ALA B 55 1 ? 15 HELX_P HELX_P15 15 ASN B 65 ? GLN B 72 ? ASN B 65 GLN B 72 1 ? 8 HELX_P HELX_P16 16 LEU B 73 ? LEU B 76 ? LEU B 73 LEU B 76 5 ? 4 HELX_P HELX_P17 17 PRO B 78 ? GLU B 80 ? PRO B 78 GLU B 80 5 ? 3 HELX_P HELX_P18 18 MET B 81 ? ARG B 93 ? MET B 81 ARG B 93 1 ? 13 HELX_P HELX_P19 19 ASP B 94 ? PHE B 99 ? ASP B 94 PHE B 99 5 ? 6 HELX_P HELX_P20 20 GLU B 101 ? ASN B 116 ? GLU B 101 ASN B 116 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 50 SG ? ? A CYS 17 A CYS 50 1_555 ? ? ? ? ? ? ? 2.080 ? ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 46 A CYS 103 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? A CYS 92 SG ? ? ? 1_555 A CYS 112 SG ? ? A CYS 92 A CYS 112 1_555 ? ? ? ? ? ? ? 2.068 ? ? disulf4 disulf ? ? B CYS 17 SG ? ? ? 1_555 B CYS 50 SG ? ? B CYS 17 B CYS 50 1_555 ? ? ? ? ? ? ? 2.072 ? ? disulf5 disulf ? ? B CYS 46 SG ? ? ? 1_555 B CYS 103 SG ? ? B CYS 46 B CYS 103 1_555 ? ? ? ? ? ? ? 2.067 ? ? disulf6 disulf ? ? B CYS 92 SG ? ? ? 1_555 B CYS 112 SG ? ? B CYS 92 B CYS 112 1_555 ? ? ? ? ? ? ? 2.047 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 702 ? 5 'BINDING SITE FOR RESIDUE ACT A 702' AC2 Software A ACT 704 ? 4 'BINDING SITE FOR RESIDUE ACT A 704' AC3 Software B ACT 703 ? 3 'BINDING SITE FOR RESIDUE ACT B 703' AC4 Software A PE8 224 ? 8 'BINDING SITE FOR RESIDUE PE8 A 224' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 2 ? THR A 2 . ? 1_555 ? 2 AC1 5 MET A 3 ? MET A 3 . ? 1_555 ? 3 AC1 5 PRO A 79 ? PRO A 79 . ? 1_555 ? 4 AC1 5 GLU A 80 ? GLU A 80 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 746 . ? 1_555 ? 6 AC2 4 MET A 81 ? MET A 81 . ? 1_555 ? 7 AC2 4 SER A 85 ? SER A 85 . ? 1_555 ? 8 AC2 4 PHE A 121 ? PHE A 121 . ? 1_555 ? 9 AC2 4 MET A 122 ? MET A 122 . ? 1_555 ? 10 AC3 3 MET B 1 ? MET B 1 . ? 1_555 ? 11 AC3 3 GLN B 5 ? GLN B 5 . ? 1_555 ? 12 AC3 3 HIS B 75 ? HIS B 75 . ? 1_555 ? 13 AC4 8 MET A 12 ? MET A 12 . ? 1_555 ? 14 AC4 8 ILE A 13 ? ILE A 13 . ? 1_555 ? 15 AC4 8 GLN A 42 ? GLN A 42 . ? 3_554 ? 16 AC4 8 MET A 54 ? MET A 54 . ? 1_555 ? 17 AC4 8 LEU A 76 ? LEU A 76 . ? 1_555 ? 18 AC4 8 MET B 84 ? MET B 84 . ? 3_544 ? 19 AC4 8 LYS B 87 ? LYS B 87 . ? 3_544 ? 20 AC4 8 ASP B 118 ? ASP B 118 . ? 3_544 ? # _atom_sites.entry_id 3B87 _atom_sites.fract_transf_matrix[1][1] 0.023440 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021881 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008732 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 MET 84 84 84 MET MET A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 CYS 112 112 112 CYS CYS A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 MET 122 122 122 MET MET A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 PRO 124 124 124 PRO PRO A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 THR 2 2 2 THR THR B . n B 1 3 MET 3 3 3 MET MET B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 GLN 5 5 5 GLN GLN B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 MET 12 12 12 MET MET B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 CYS 17 17 17 CYS CYS B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 PHE 21 21 21 PHE PHE B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ASP 27 27 27 ASP ASP B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ARG 30 30 30 ARG ARG B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ARG 32 32 32 ARG ARG B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 PHE 36 36 36 PHE PHE B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 PHE 38 38 38 PHE PHE B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 GLN 42 42 42 GLN GLN B . n B 1 43 ASP 43 43 43 ASP ASP B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 MET 45 45 45 MET MET B . n B 1 46 CYS 46 46 46 CYS CYS B . n B 1 47 TYR 47 47 47 TYR TYR B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 LYS 49 49 49 LYS LYS B . n B 1 50 CYS 50 50 50 CYS CYS B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 MET 54 54 54 MET MET B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 ALA 57 57 57 ALA ALA B . n B 1 58 VAL 58 58 58 VAL VAL B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 PRO 67 67 67 PRO PRO B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 GLN 72 72 72 GLN GLN B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 PRO 74 74 74 PRO PRO B . n B 1 75 HIS 75 75 75 HIS HIS B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 PRO 78 78 78 PRO PRO B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 MET 81 81 81 MET MET B . n B 1 82 MET 82 82 82 MET MET B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 MET 84 84 84 MET MET B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 ARG 86 86 86 ARG ARG B . n B 1 87 LYS 87 87 87 LYS LYS B . n B 1 88 SER 88 88 88 SER SER B . n B 1 89 VAL 89 89 89 VAL VAL B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 CYS 92 92 92 CYS CYS B . n B 1 93 ARG 93 93 93 ARG ARG B . n B 1 94 ASP 94 94 94 ASP ASP B . n B 1 95 THR 95 95 95 THR THR B . n B 1 96 HIS 96 96 96 HIS HIS B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 GLN 98 98 98 GLN GLN B . n B 1 99 PHE 99 99 99 PHE PHE B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 GLU 101 101 101 GLU GLU B . n B 1 102 SER 102 102 102 SER SER B . n B 1 103 CYS 103 103 103 CYS CYS B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 VAL 106 106 106 VAL VAL B . n B 1 107 TYR 107 107 107 TYR TYR B . n B 1 108 GLN 108 108 108 GLN GLN B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 ALA 110 110 110 ALA ALA B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 CYS 112 112 112 CYS CYS B . n B 1 113 PHE 113 113 113 PHE PHE B . n B 1 114 SER 114 114 114 SER SER B . n B 1 115 GLU 115 115 115 GLU GLU B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 ALA 117 117 117 ALA ALA B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 GLY 119 119 119 GLY GLY B . n B 1 120 GLN 120 120 120 GLN GLN B . n B 1 121 PHE 121 121 121 PHE PHE B . n B 1 122 MET 122 122 122 MET MET B . n B 1 123 TRP 123 123 123 TRP TRP B . n B 1 124 PRO 124 124 124 PRO PRO B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 702 702 ACT ACT A . D 2 ACT 1 704 704 ACT ACT A . E 3 PE8 1 224 224 PE8 PE8 A . F 2 ACT 1 703 703 ACT ACT B . G 4 HOH 1 705 1 HOH HOH A . G 4 HOH 2 706 3 HOH HOH A . G 4 HOH 3 707 9 HOH HOH A . G 4 HOH 4 708 10 HOH HOH A . G 4 HOH 5 709 15 HOH HOH A . G 4 HOH 6 710 16 HOH HOH A . G 4 HOH 7 711 17 HOH HOH A . G 4 HOH 8 712 18 HOH HOH A . G 4 HOH 9 713 20 HOH HOH A . G 4 HOH 10 714 23 HOH HOH A . G 4 HOH 11 715 25 HOH HOH A . G 4 HOH 12 716 26 HOH HOH A . G 4 HOH 13 717 29 HOH HOH A . G 4 HOH 14 718 34 HOH HOH A . G 4 HOH 15 719 35 HOH HOH A . G 4 HOH 16 720 37 HOH HOH A . G 4 HOH 17 721 38 HOH HOH A . G 4 HOH 18 722 41 HOH HOH A . G 4 HOH 19 723 42 HOH HOH A . G 4 HOH 20 724 43 HOH HOH A . G 4 HOH 21 725 45 HOH HOH A . G 4 HOH 22 726 54 HOH HOH A . G 4 HOH 23 727 55 HOH HOH A . G 4 HOH 24 728 57 HOH HOH A . G 4 HOH 25 729 59 HOH HOH A . G 4 HOH 26 730 63 HOH HOH A . G 4 HOH 27 731 65 HOH HOH A . G 4 HOH 28 732 66 HOH HOH A . G 4 HOH 29 733 68 HOH HOH A . G 4 HOH 30 734 71 HOH HOH A . G 4 HOH 31 735 74 HOH HOH A . G 4 HOH 32 736 75 HOH HOH A . G 4 HOH 33 737 76 HOH HOH A . G 4 HOH 34 738 80 HOH HOH A . G 4 HOH 35 739 81 HOH HOH A . G 4 HOH 36 740 85 HOH HOH A . G 4 HOH 37 741 88 HOH HOH A . G 4 HOH 38 742 89 HOH HOH A . G 4 HOH 39 743 90 HOH HOH A . G 4 HOH 40 744 91 HOH HOH A . G 4 HOH 41 745 93 HOH HOH A . G 4 HOH 42 746 95 HOH HOH A . G 4 HOH 43 747 103 HOH HOH A . G 4 HOH 44 748 104 HOH HOH A . G 4 HOH 45 749 106 HOH HOH A . G 4 HOH 46 750 112 HOH HOH A . G 4 HOH 47 751 113 HOH HOH A . G 4 HOH 48 752 115 HOH HOH A . G 4 HOH 49 753 118 HOH HOH A . G 4 HOH 50 754 119 HOH HOH A . G 4 HOH 51 755 120 HOH HOH A . G 4 HOH 52 756 121 HOH HOH A . G 4 HOH 53 757 122 HOH HOH A . G 4 HOH 54 758 124 HOH HOH A . G 4 HOH 55 759 127 HOH HOH A . G 4 HOH 56 760 128 HOH HOH A . G 4 HOH 57 761 130 HOH HOH A . G 4 HOH 58 762 135 HOH HOH A . G 4 HOH 59 763 137 HOH HOH A . G 4 HOH 60 764 140 HOH HOH A . G 4 HOH 61 765 145 HOH HOH A . G 4 HOH 62 766 147 HOH HOH A . G 4 HOH 63 767 150 HOH HOH A . G 4 HOH 64 768 151 HOH HOH A . G 4 HOH 65 769 152 HOH HOH A . G 4 HOH 66 770 153 HOH HOH A . G 4 HOH 67 771 154 HOH HOH A . G 4 HOH 68 772 155 HOH HOH A . G 4 HOH 69 773 158 HOH HOH A . G 4 HOH 70 774 159 HOH HOH A . G 4 HOH 71 775 161 HOH HOH A . G 4 HOH 72 776 165 HOH HOH A . G 4 HOH 73 777 166 HOH HOH A . G 4 HOH 74 778 167 HOH HOH A . G 4 HOH 75 779 170 HOH HOH A . G 4 HOH 76 780 173 HOH HOH A . G 4 HOH 77 781 174 HOH HOH A . G 4 HOH 78 782 177 HOH HOH A . G 4 HOH 79 783 178 HOH HOH A . G 4 HOH 80 784 179 HOH HOH A . G 4 HOH 81 785 180 HOH HOH A . G 4 HOH 82 786 185 HOH HOH A . G 4 HOH 83 787 186 HOH HOH A . G 4 HOH 84 788 187 HOH HOH A . G 4 HOH 85 789 188 HOH HOH A . G 4 HOH 86 790 190 HOH HOH A . G 4 HOH 87 791 194 HOH HOH A . G 4 HOH 88 792 196 HOH HOH A . G 4 HOH 89 793 199 HOH HOH A . G 4 HOH 90 794 200 HOH HOH A . G 4 HOH 91 795 203 HOH HOH A . G 4 HOH 92 796 204 HOH HOH A . G 4 HOH 93 797 205 HOH HOH A . G 4 HOH 94 798 208 HOH HOH A . G 4 HOH 95 799 209 HOH HOH A . G 4 HOH 96 800 218 HOH HOH A . G 4 HOH 97 801 220 HOH HOH A . G 4 HOH 98 802 221 HOH HOH A . H 4 HOH 1 704 2 HOH HOH B . H 4 HOH 2 705 4 HOH HOH B . H 4 HOH 3 706 5 HOH HOH B . H 4 HOH 4 707 6 HOH HOH B . H 4 HOH 5 708 7 HOH HOH B . H 4 HOH 6 709 8 HOH HOH B . H 4 HOH 7 710 11 HOH HOH B . H 4 HOH 8 711 12 HOH HOH B . H 4 HOH 9 712 13 HOH HOH B . H 4 HOH 10 713 14 HOH HOH B . H 4 HOH 11 714 19 HOH HOH B . H 4 HOH 12 715 21 HOH HOH B . H 4 HOH 13 716 22 HOH HOH B . H 4 HOH 14 717 24 HOH HOH B . H 4 HOH 15 718 27 HOH HOH B . H 4 HOH 16 719 28 HOH HOH B . H 4 HOH 17 720 30 HOH HOH B . H 4 HOH 18 721 31 HOH HOH B . H 4 HOH 19 722 32 HOH HOH B . H 4 HOH 20 723 36 HOH HOH B . H 4 HOH 21 724 39 HOH HOH B . H 4 HOH 22 725 44 HOH HOH B . H 4 HOH 23 726 46 HOH HOH B . H 4 HOH 24 727 47 HOH HOH B . H 4 HOH 25 728 48 HOH HOH B . H 4 HOH 26 729 49 HOH HOH B . H 4 HOH 27 730 50 HOH HOH B . H 4 HOH 28 731 51 HOH HOH B . H 4 HOH 29 732 52 HOH HOH B . H 4 HOH 30 733 53 HOH HOH B . H 4 HOH 31 734 56 HOH HOH B . H 4 HOH 32 735 58 HOH HOH B . H 4 HOH 33 736 60 HOH HOH B . H 4 HOH 34 737 61 HOH HOH B . H 4 HOH 35 738 62 HOH HOH B . H 4 HOH 36 739 64 HOH HOH B . H 4 HOH 37 740 67 HOH HOH B . H 4 HOH 38 741 69 HOH HOH B . H 4 HOH 39 742 70 HOH HOH B . H 4 HOH 40 743 72 HOH HOH B . H 4 HOH 41 744 73 HOH HOH B . H 4 HOH 42 745 77 HOH HOH B . H 4 HOH 43 746 78 HOH HOH B . H 4 HOH 44 747 83 HOH HOH B . H 4 HOH 45 748 84 HOH HOH B . H 4 HOH 46 749 86 HOH HOH B . H 4 HOH 47 750 87 HOH HOH B . H 4 HOH 48 751 92 HOH HOH B . H 4 HOH 49 752 96 HOH HOH B . H 4 HOH 50 753 97 HOH HOH B . H 4 HOH 51 754 98 HOH HOH B . H 4 HOH 52 755 99 HOH HOH B . H 4 HOH 53 756 101 HOH HOH B . H 4 HOH 54 757 102 HOH HOH B . H 4 HOH 55 758 105 HOH HOH B . H 4 HOH 56 759 109 HOH HOH B . H 4 HOH 57 760 110 HOH HOH B . H 4 HOH 58 761 111 HOH HOH B . H 4 HOH 59 762 114 HOH HOH B . H 4 HOH 60 763 123 HOH HOH B . H 4 HOH 61 764 125 HOH HOH B . H 4 HOH 62 765 126 HOH HOH B . H 4 HOH 63 766 131 HOH HOH B . H 4 HOH 64 767 132 HOH HOH B . H 4 HOH 65 768 133 HOH HOH B . H 4 HOH 66 769 134 HOH HOH B . H 4 HOH 67 770 136 HOH HOH B . H 4 HOH 68 771 139 HOH HOH B . H 4 HOH 69 772 142 HOH HOH B . H 4 HOH 70 773 148 HOH HOH B . H 4 HOH 71 774 156 HOH HOH B . H 4 HOH 72 775 157 HOH HOH B . H 4 HOH 73 776 160 HOH HOH B . H 4 HOH 74 777 162 HOH HOH B . H 4 HOH 75 778 164 HOH HOH B . H 4 HOH 76 779 171 HOH HOH B . H 4 HOH 77 780 175 HOH HOH B . H 4 HOH 78 781 183 HOH HOH B . H 4 HOH 79 782 184 HOH HOH B . H 4 HOH 80 783 191 HOH HOH B . H 4 HOH 81 784 192 HOH HOH B . H 4 HOH 82 785 193 HOH HOH B . H 4 HOH 83 786 198 HOH HOH B . H 4 HOH 84 787 201 HOH HOH B . H 4 HOH 85 788 202 HOH HOH B . H 4 HOH 86 789 207 HOH HOH B . H 4 HOH 87 790 210 HOH HOH B . H 4 HOH 88 791 215 HOH HOH B . H 4 HOH 89 792 216 HOH HOH B . H 4 HOH 90 793 222 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,G 2 1 B,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' database_2 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3B87 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 45.700 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 45.700 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.6LDz 'May 9 2006' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CrystalClear . ? ? ? ? 'data collection' ? ? ? 5 d*TREK . ? ? ? ? 'data reduction' ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 713 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 782 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 37 ? ? -95.37 39.27 2 1 ASN B 37 ? A -85.82 45.59 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 60 ? CG ? A LYS 60 CG 2 1 Y 1 A LYS 60 ? CD ? A LYS 60 CD 3 1 Y 1 A LYS 60 ? CE ? A LYS 60 CE 4 1 Y 1 A LYS 60 ? NZ ? A LYS 60 NZ 5 1 Y 1 B LYS 60 ? CG ? B LYS 60 CG 6 1 Y 1 B LYS 60 ? CD ? B LYS 60 CD 7 1 Y 1 B LYS 60 ? CE ? B LYS 60 CE 8 1 Y 1 B LYS 60 ? NZ ? B LYS 60 NZ 9 1 Y 1 B GLN 120 ? CG ? B GLN 120 CG 10 1 Y 1 B GLN 120 ? CD ? B GLN 120 CD 11 1 Y 1 B GLN 120 ? OE1 ? B GLN 120 OE1 12 1 Y 1 B GLN 120 ? NE2 ? B GLN 120 NE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL PE8 4 water HOH #