HEADER HYDROLASE 01-NOV-07 3B8S TITLE CRYSTAL STRUCTURE OF WILD-TYPE CHITINASE A FROM VIBRIO HARVEYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES UNP 22-597; COMPND 5 SYNONYM: AN ENDOCHITINASE A, GLYCOSYLHYDROLASE, FAMILY 18 CHITINASE; COMPND 6 EC: 3.2.1.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO HARVEYI; SOURCE 3 ORGANISM_TAXID: 669; SOURCE 4 STRAIN: LMG7890; SOURCE 5 GENE: CHIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE60; SOURCE 11 OTHER_DETAILS: VIBRIO CARCHARIAE IS SYNONYM OF VIBRIO HARVEYI KEYWDS TIM-BARREL, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SONGSIRIRITTHIGUL,S.PANTOOM,A.H.AGUDA,R.C.ROBINSON,W.SUGINTA REVDAT 5 09-OCT-24 3B8S 1 REMARK REVDAT 4 01-NOV-23 3B8S 1 SEQADV REVDAT 3 24-FEB-09 3B8S 1 VERSN REVDAT 2 17-JUN-08 3B8S 1 JRNL REVDAT 1 01-APR-08 3B8S 0 JRNL AUTH C.SONGSIRIRITTHIGUL,S.PANTOOM,A.H.AGUDA,R.C.ROBINSON, JRNL AUTH 2 W.SUGINTA JRNL TITL CRYSTAL STRUCTURES OF VIBRIO HARVEYI CHITINASE A COMPLEXED JRNL TITL 2 WITH CHITOOLIGOSACCHARIDES: IMPLICATIONS FOR THE CATALYTIC JRNL TITL 3 MECHANISM JRNL REF J.STRUCT.BIOL. V. 162 491 2008 JRNL REFN ISSN 1047-8477 JRNL PMID 18467126 JRNL DOI 10.1016/J.JSB.2008.03.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 69969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4947 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 269 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1091 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.71000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : -0.21000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8940 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12162 ; 0.968 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1132 ; 5.165 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 414 ;35.885 ;25.314 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1366 ;12.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1274 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6996 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4474 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6053 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1019 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 83 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5747 ; 0.453 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8942 ; 0.597 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3777 ; 0.946 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3220 ; 1.421 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 19.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : 0.26300 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3B9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.20M AMMONIUM SULFATE, 0.1M TRIS-HCL REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 589 REMARK 465 GLY A 590 REMARK 465 VAL A 591 REMARK 465 VAL A 592 REMARK 465 THR A 593 REMARK 465 PRO A 594 REMARK 465 PRO A 595 REMARK 465 ASN A 596 REMARK 465 ARG A 597 REMARK 465 ARG A 598 REMARK 465 SER A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 GLY B 589 REMARK 465 GLY B 590 REMARK 465 VAL B 591 REMARK 465 VAL B 592 REMARK 465 THR B 593 REMARK 465 PRO B 594 REMARK 465 PRO B 595 REMARK 465 ASN B 596 REMARK 465 ARG B 597 REMARK 465 ARG B 598 REMARK 465 SER B 599 REMARK 465 HIS B 600 REMARK 465 HIS B 601 REMARK 465 HIS B 602 REMARK 465 HIS B 603 REMARK 465 HIS B 604 REMARK 465 HIS B 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 606 O HOH A 1107 2.02 REMARK 500 O HOH B 874 O HOH B 1077 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1108 O HOH A 1112 1445 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 93 71.83 -118.06 REMARK 500 TYR A 171 -118.12 -86.94 REMARK 500 ASN A 199 37.97 -148.69 REMARK 500 LYS A 250 -153.13 -128.08 REMARK 500 ASP A 313 72.20 -114.40 REMARK 500 THR A 405 25.38 -144.88 REMARK 500 GLU A 531 67.35 64.72 REMARK 500 SER B 49 -158.98 -151.15 REMARK 500 THR B 93 65.18 -109.26 REMARK 500 ASP B 117 -157.39 -142.35 REMARK 500 TYR B 171 -112.77 -89.71 REMARK 500 ASN B 199 47.69 -143.92 REMARK 500 TYR B 234 -4.83 -144.67 REMARK 500 LYS B 250 -154.52 -131.02 REMARK 500 ASP B 313 70.40 -115.52 REMARK 500 THR B 405 19.42 -146.85 REMARK 500 GLU B 531 66.19 63.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B9A RELATED DB: PDB REMARK 900 RELATED ID: 3B9D RELATED DB: PDB REMARK 900 RELATED ID: 3B9E RELATED DB: PDB DBREF 3B8S A 22 597 UNP Q9AMP1 Q9AMP1_VIBHA 22 597 DBREF 3B8S B 22 597 UNP Q9AMP1 Q9AMP1_VIBHA 22 597 SEQADV 3B8S ARG A 598 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S SER A 599 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS A 600 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS A 601 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS A 602 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS A 603 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS A 604 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS A 605 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S ARG B 598 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S SER B 599 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS B 600 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS B 601 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS B 602 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS B 603 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS B 604 UNP Q9AMP1 EXPRESSION TAG SEQADV 3B8S HIS B 605 UNP Q9AMP1 EXPRESSION TAG SEQRES 1 A 584 ALA PRO THR ALA PRO SER ILE ASP MET TYR GLY SER ASN SEQRES 2 A 584 ASN LEU GLN PHE SER LYS ILE GLU LEU ALA MET GLU THR SEQRES 3 A 584 THR SER GLY TYR ASN ASP MET VAL LYS TYR HIS GLU LEU SEQRES 4 A 584 ALA LYS ILE LYS VAL LYS PHE ASN GLN TRP SER GLY THR SEQRES 5 A 584 SER GLY ASP THR TYR ASN VAL TYR PHE ASP GLY VAL LYS SEQRES 6 A 584 VAL ALA THR GLY ALA ILE THR GLY SER GLN THR THR ALA SEQRES 7 A 584 SER PHE GLU TYR GLY GLN GLY GLY LEU TYR GLN MET GLU SEQRES 8 A 584 ILE GLU ALA CYS ASP ALA THR GLY CYS SER LYS SER ALA SEQRES 9 A 584 PRO VAL GLU ILE THR ILE ALA ASP THR ASP GLY SER HIS SEQRES 10 A 584 LEU LYS PRO LEU THR MET ASN VAL ASP PRO ASN ASN LYS SEQRES 11 A 584 SER TYR ASN THR ASP PRO SER ILE VAL MET GLY THR TYR SEQRES 12 A 584 PHE VAL GLU TRP GLY ILE TYR GLY ARG ASP TYR THR VAL SEQRES 13 A 584 ASP ASN MET PRO VAL ASP ASN LEU THR HIS ILE LEU TYR SEQRES 14 A 584 GLY PHE ILE PRO ILE CYS GLY PRO ASN GLU SER VAL LYS SEQRES 15 A 584 SER VAL GLY GLY ASN SER PHE ASN ALA LEU GLN THR ALA SEQRES 16 A 584 CYS ARG GLY VAL ASN ASP TYR GLU VAL VAL ILE HIS ASP SEQRES 17 A 584 PRO TRP ALA ALA TYR GLN LYS SER PHE PRO GLN ALA GLY SEQRES 18 A 584 HIS GLU TYR SER THR PRO ILE LYS GLY ASN TYR ALA MET SEQRES 19 A 584 LEU MET ALA LEU LYS GLN ARG ASN PRO ASP LEU LYS ILE SEQRES 20 A 584 ILE PRO SER ILE GLY GLY TRP THR LEU SER ASP PRO PHE SEQRES 21 A 584 TYR ASP PHE VAL ASP LYS LYS ASN ARG ASP THR PHE VAL SEQRES 22 A 584 ALA SER VAL LYS LYS PHE LEU LYS THR TRP LYS PHE TYR SEQRES 23 A 584 ASP GLY VAL ASP ILE ASP TRP GLU PHE PRO GLY GLY GLY SEQRES 24 A 584 GLY ALA ALA ALA ASP LYS GLY ASP PRO VAL ASN ASP GLY SEQRES 25 A 584 PRO ALA TYR ILE ALA LEU MET ARG GLU LEU ARG VAL MET SEQRES 26 A 584 LEU ASP GLU LEU GLU ALA GLU THR GLY ARG THR TYR GLU SEQRES 27 A 584 LEU THR SER ALA ILE GLY VAL GLY TYR ASP LYS ILE GLU SEQRES 28 A 584 ASP VAL ASP TYR ALA ASP ALA VAL GLN TYR MET ASP TYR SEQRES 29 A 584 ILE PHE ALA MET THR TYR ASP PHE TYR GLY GLY TRP ASN SEQRES 30 A 584 ASN VAL PRO GLY HIS GLN THR ALA LEU TYR CYS GLY SER SEQRES 31 A 584 PHE MET ARG PRO GLY GLN CYS ASP GLY GLY GLY VAL ASP SEQRES 32 A 584 GLU ASN GLY GLU PRO TYR LYS GLY PRO ALA TYR THR ALA SEQRES 33 A 584 ASP ASN GLY ILE GLN LEU LEU LEU ALA GLN GLY VAL PRO SEQRES 34 A 584 ALA ASN LYS LEU VAL LEU GLY THR ALA MET TYR GLY ARG SEQRES 35 A 584 GLY TRP GLU GLY VAL THR PRO ASP THR LEU THR ASP PRO SEQRES 36 A 584 ASN ASP PRO MET THR GLY THR ALA THR GLY LYS LEU LYS SEQRES 37 A 584 GLY SER THR ALA GLN GLY VAL TRP GLU ASP GLY VAL ILE SEQRES 38 A 584 ASP TYR LYS GLY ILE LYS SER PHE MET LEU GLY ALA ASN SEQRES 39 A 584 ASN THR GLY ILE ASN GLY PHE GLU TYR GLY TYR ASP ALA SEQRES 40 A 584 GLN ALA GLU ALA PRO TRP VAL TRP ASN ARG SER THR GLY SEQRES 41 A 584 GLU LEU ILE THR PHE ASP ASP HIS ARG SER VAL LEU ALA SEQRES 42 A 584 LYS GLY ASN TYR ALA LYS SER LEU GLY LEU ALA GLY LEU SEQRES 43 A 584 PHE SER TRP GLU ILE ASP ALA ASP ASN GLY ASP ILE LEU SEQRES 44 A 584 ASN ALA MET HIS GLU GLY MET ALA GLY GLY VAL VAL THR SEQRES 45 A 584 PRO PRO ASN ARG ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 584 ALA PRO THR ALA PRO SER ILE ASP MET TYR GLY SER ASN SEQRES 2 B 584 ASN LEU GLN PHE SER LYS ILE GLU LEU ALA MET GLU THR SEQRES 3 B 584 THR SER GLY TYR ASN ASP MET VAL LYS TYR HIS GLU LEU SEQRES 4 B 584 ALA LYS ILE LYS VAL LYS PHE ASN GLN TRP SER GLY THR SEQRES 5 B 584 SER GLY ASP THR TYR ASN VAL TYR PHE ASP GLY VAL LYS SEQRES 6 B 584 VAL ALA THR GLY ALA ILE THR GLY SER GLN THR THR ALA SEQRES 7 B 584 SER PHE GLU TYR GLY GLN GLY GLY LEU TYR GLN MET GLU SEQRES 8 B 584 ILE GLU ALA CYS ASP ALA THR GLY CYS SER LYS SER ALA SEQRES 9 B 584 PRO VAL GLU ILE THR ILE ALA ASP THR ASP GLY SER HIS SEQRES 10 B 584 LEU LYS PRO LEU THR MET ASN VAL ASP PRO ASN ASN LYS SEQRES 11 B 584 SER TYR ASN THR ASP PRO SER ILE VAL MET GLY THR TYR SEQRES 12 B 584 PHE VAL GLU TRP GLY ILE TYR GLY ARG ASP TYR THR VAL SEQRES 13 B 584 ASP ASN MET PRO VAL ASP ASN LEU THR HIS ILE LEU TYR SEQRES 14 B 584 GLY PHE ILE PRO ILE CYS GLY PRO ASN GLU SER VAL LYS SEQRES 15 B 584 SER VAL GLY GLY ASN SER PHE ASN ALA LEU GLN THR ALA SEQRES 16 B 584 CYS ARG GLY VAL ASN ASP TYR GLU VAL VAL ILE HIS ASP SEQRES 17 B 584 PRO TRP ALA ALA TYR GLN LYS SER PHE PRO GLN ALA GLY SEQRES 18 B 584 HIS GLU TYR SER THR PRO ILE LYS GLY ASN TYR ALA MET SEQRES 19 B 584 LEU MET ALA LEU LYS GLN ARG ASN PRO ASP LEU LYS ILE SEQRES 20 B 584 ILE PRO SER ILE GLY GLY TRP THR LEU SER ASP PRO PHE SEQRES 21 B 584 TYR ASP PHE VAL ASP LYS LYS ASN ARG ASP THR PHE VAL SEQRES 22 B 584 ALA SER VAL LYS LYS PHE LEU LYS THR TRP LYS PHE TYR SEQRES 23 B 584 ASP GLY VAL ASP ILE ASP TRP GLU PHE PRO GLY GLY GLY SEQRES 24 B 584 GLY ALA ALA ALA ASP LYS GLY ASP PRO VAL ASN ASP GLY SEQRES 25 B 584 PRO ALA TYR ILE ALA LEU MET ARG GLU LEU ARG VAL MET SEQRES 26 B 584 LEU ASP GLU LEU GLU ALA GLU THR GLY ARG THR TYR GLU SEQRES 27 B 584 LEU THR SER ALA ILE GLY VAL GLY TYR ASP LYS ILE GLU SEQRES 28 B 584 ASP VAL ASP TYR ALA ASP ALA VAL GLN TYR MET ASP TYR SEQRES 29 B 584 ILE PHE ALA MET THR TYR ASP PHE TYR GLY GLY TRP ASN SEQRES 30 B 584 ASN VAL PRO GLY HIS GLN THR ALA LEU TYR CYS GLY SER SEQRES 31 B 584 PHE MET ARG PRO GLY GLN CYS ASP GLY GLY GLY VAL ASP SEQRES 32 B 584 GLU ASN GLY GLU PRO TYR LYS GLY PRO ALA TYR THR ALA SEQRES 33 B 584 ASP ASN GLY ILE GLN LEU LEU LEU ALA GLN GLY VAL PRO SEQRES 34 B 584 ALA ASN LYS LEU VAL LEU GLY THR ALA MET TYR GLY ARG SEQRES 35 B 584 GLY TRP GLU GLY VAL THR PRO ASP THR LEU THR ASP PRO SEQRES 36 B 584 ASN ASP PRO MET THR GLY THR ALA THR GLY LYS LEU LYS SEQRES 37 B 584 GLY SER THR ALA GLN GLY VAL TRP GLU ASP GLY VAL ILE SEQRES 38 B 584 ASP TYR LYS GLY ILE LYS SER PHE MET LEU GLY ALA ASN SEQRES 39 B 584 ASN THR GLY ILE ASN GLY PHE GLU TYR GLY TYR ASP ALA SEQRES 40 B 584 GLN ALA GLU ALA PRO TRP VAL TRP ASN ARG SER THR GLY SEQRES 41 B 584 GLU LEU ILE THR PHE ASP ASP HIS ARG SER VAL LEU ALA SEQRES 42 B 584 LYS GLY ASN TYR ALA LYS SER LEU GLY LEU ALA GLY LEU SEQRES 43 B 584 PHE SER TRP GLU ILE ASP ALA ASP ASN GLY ASP ILE LEU SEQRES 44 B 584 ASN ALA MET HIS GLU GLY MET ALA GLY GLY VAL VAL THR SEQRES 45 B 584 PRO PRO ASN ARG ARG SER HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *1091(H2 O) HELIX 1 1 MET A 30 ASN A 35 5 6 HELIX 2 2 GLY A 50 MET A 54 1 5 HELIX 3 3 TRP A 168 TYR A 171 5 4 HELIX 4 4 THR A 176 MET A 180 5 5 HELIX 5 5 PRO A 181 LEU A 185 5 5 HELIX 6 6 ASN A 199 VAL A 205 5 7 HELIX 7 7 GLY A 206 CYS A 217 1 12 HELIX 8 8 ASP A 229 GLN A 235 1 7 HELIX 9 9 PHE A 238 GLY A 242 5 5 HELIX 10 10 LYS A 250 ASN A 263 1 14 HELIX 11 11 SER A 278 VAL A 285 5 8 HELIX 12 12 ASP A 286 TRP A 304 1 19 HELIX 13 13 ASN A 331 GLY A 355 1 25 HELIX 14 14 GLY A 367 GLU A 372 1 6 HELIX 15 15 ASP A 375 VAL A 380 1 6 HELIX 16 16 GLN A 381 MET A 383 5 3 HELIX 17 17 THR A 436 GLN A 447 1 12 HELIX 18 18 PRO A 450 ASN A 452 5 3 HELIX 19 19 THR A 469 LEU A 473 5 5 HELIX 20 20 ASP A 478 GLY A 482 5 5 HELIX 21 21 SER A 491 GLY A 495 5 5 HELIX 22 22 TYR A 504 MET A 511 1 8 HELIX 23 23 ASP A 548 GLY A 563 1 16 HELIX 24 24 GLU A 571 ASP A 575 5 5 HELIX 25 25 GLY A 577 ALA A 588 1 12 HELIX 26 26 MET B 30 ASN B 35 5 6 HELIX 27 27 GLY B 50 MET B 54 1 5 HELIX 28 28 TRP B 168 TYR B 171 5 4 HELIX 29 29 THR B 176 MET B 180 5 5 HELIX 30 30 PRO B 181 LEU B 185 5 5 HELIX 31 31 ASN B 199 VAL B 205 5 7 HELIX 32 32 GLY B 206 CYS B 217 1 12 HELIX 33 33 ASP B 229 GLN B 235 1 7 HELIX 34 34 PHE B 238 GLY B 242 5 5 HELIX 35 35 LYS B 250 ASN B 263 1 14 HELIX 36 36 SER B 278 PHE B 284 5 7 HELIX 37 37 ASP B 286 TRP B 304 1 19 HELIX 38 38 ASN B 331 GLY B 355 1 25 HELIX 39 39 GLY B 367 GLU B 372 1 6 HELIX 40 40 ASP B 375 VAL B 380 1 6 HELIX 41 41 GLN B 381 MET B 383 5 3 HELIX 42 42 THR B 436 GLY B 448 1 13 HELIX 43 43 PRO B 450 ASN B 452 5 3 HELIX 44 44 THR B 469 LEU B 473 5 5 HELIX 45 45 ASP B 478 GLY B 482 5 5 HELIX 46 46 SER B 491 GLY B 495 5 5 HELIX 47 47 TYR B 504 MET B 511 1 8 HELIX 48 48 ASP B 548 GLY B 563 1 16 HELIX 49 49 GLU B 571 ASP B 575 5 5 HELIX 50 50 GLY B 577 MET B 587 1 11 SHEET 1 A 3 SER A 27 ILE A 28 0 SHEET 2 A 3 ALA A 61 ASN A 68 -1 O ASN A 68 N SER A 27 SHEET 3 A 3 GLN A 96 TYR A 103 -1 O ALA A 99 N VAL A 65 SHEET 1 B 5 GLN A 37 SER A 39 0 SHEET 2 B 5 VAL A 127 ALA A 132 1 O ALA A 132 N PHE A 38 SHEET 3 B 5 GLY A 107 CYS A 116 -1 N MET A 111 O VAL A 127 SHEET 4 B 5 THR A 77 PHE A 82 -1 N THR A 77 O CYS A 116 SHEET 5 B 5 VAL A 85 ALA A 91 -1 O VAL A 87 N VAL A 80 SHEET 1 C 4 GLN A 37 SER A 39 0 SHEET 2 C 4 VAL A 127 ALA A 132 1 O ALA A 132 N PHE A 38 SHEET 3 C 4 GLY A 107 CYS A 116 -1 N MET A 111 O VAL A 127 SHEET 4 C 4 CYS A 121 LYS A 123 -1 O SER A 122 N ALA A 115 SHEET 1 D 2 ILE A 41 LEU A 43 0 SHEET 2 D 2 VAL A 55 TYR A 57 -1 O LYS A 56 N GLU A 42 SHEET 1 E 9 VAL A 160 VAL A 166 0 SHEET 2 E 9 HIS A 187 ILE A 193 1 O LEU A 189 N THR A 163 SHEET 3 E 9 LYS A 267 GLY A 273 1 O SER A 271 N ILE A 193 SHEET 4 E 9 GLY A 309 ASP A 313 1 O ASP A 313 N ILE A 272 SHEET 5 E 9 GLU A 359 GLY A 365 1 O THR A 361 N VAL A 310 SHEET 6 E 9 TYR A 385 MET A 389 1 O PHE A 387 N SER A 362 SHEET 7 E 9 LEU A 454 ALA A 459 1 O VAL A 455 N ILE A 386 SHEET 8 E 9 GLY A 566 TRP A 570 1 O PHE A 568 N THR A 458 SHEET 9 E 9 VAL A 160 VAL A 166 1 N GLY A 162 O LEU A 567 SHEET 1 F 3 GLY A 486 LYS A 487 0 SHEET 2 F 3 TYR A 461 GLU A 466 -1 N GLU A 466 O GLY A 486 SHEET 3 F 3 VAL A 501 ASP A 503 -1 O ILE A 502 N GLY A 462 SHEET 1 G 5 GLY A 486 LYS A 487 0 SHEET 2 G 5 TYR A 461 GLU A 466 -1 N GLU A 466 O GLY A 486 SHEET 3 G 5 GLU A 542 THR A 545 -1 O THR A 545 N ARG A 463 SHEET 4 G 5 ALA A 532 ASN A 537 -1 N ASN A 537 O GLU A 542 SHEET 5 G 5 GLU A 523 ASP A 527 -1 N ASP A 527 O ALA A 532 SHEET 1 H 3 SER B 27 ILE B 28 0 SHEET 2 H 3 ALA B 61 ASN B 68 -1 O ASN B 68 N SER B 27 SHEET 3 H 3 GLN B 96 TYR B 103 -1 O ALA B 99 N VAL B 65 SHEET 1 I 5 GLN B 37 SER B 39 0 SHEET 2 I 5 VAL B 127 ALA B 132 1 O ALA B 132 N PHE B 38 SHEET 3 I 5 GLY B 107 CYS B 116 -1 N MET B 111 O VAL B 127 SHEET 4 I 5 THR B 77 PHE B 82 -1 N ASN B 79 O GLU B 114 SHEET 5 I 5 VAL B 85 ALA B 91 -1 O VAL B 85 N PHE B 82 SHEET 1 J 4 GLN B 37 SER B 39 0 SHEET 2 J 4 VAL B 127 ALA B 132 1 O ALA B 132 N PHE B 38 SHEET 3 J 4 GLY B 107 CYS B 116 -1 N MET B 111 O VAL B 127 SHEET 4 J 4 CYS B 121 LYS B 123 -1 O SER B 122 N ALA B 115 SHEET 1 K 2 ILE B 41 LEU B 43 0 SHEET 2 K 2 VAL B 55 TYR B 57 -1 O LYS B 56 N GLU B 42 SHEET 1 L 9 VAL B 160 VAL B 166 0 SHEET 2 L 9 HIS B 187 ILE B 193 1 O LEU B 189 N THR B 163 SHEET 3 L 9 LYS B 267 GLY B 273 1 O SER B 271 N TYR B 190 SHEET 4 L 9 GLY B 309 ASP B 313 1 O ASP B 311 N ILE B 272 SHEET 5 L 9 GLU B 359 ILE B 364 1 O THR B 361 N VAL B 310 SHEET 6 L 9 TYR B 385 ALA B 388 1 O PHE B 387 N SER B 362 SHEET 7 L 9 LEU B 454 ALA B 459 1 O VAL B 455 N ILE B 386 SHEET 8 L 9 GLY B 566 TRP B 570 1 O PHE B 568 N THR B 458 SHEET 9 L 9 VAL B 160 VAL B 166 1 N GLY B 162 O LEU B 567 SHEET 1 M 3 GLY B 486 LYS B 487 0 SHEET 2 M 3 TYR B 461 GLU B 466 -1 N GLU B 466 O GLY B 486 SHEET 3 M 3 VAL B 501 ASP B 503 -1 O ILE B 502 N GLY B 462 SHEET 1 N 5 GLY B 486 LYS B 487 0 SHEET 2 N 5 TYR B 461 GLU B 466 -1 N GLU B 466 O GLY B 486 SHEET 3 N 5 GLU B 542 THR B 545 -1 O THR B 545 N ARG B 463 SHEET 4 N 5 ALA B 532 ASN B 537 -1 N ASN B 537 O GLU B 542 SHEET 5 N 5 PHE B 522 ASP B 527 -1 N ASP B 527 O ALA B 532 SSBOND 1 CYS A 116 CYS A 121 1555 1555 2.04 SSBOND 2 CYS A 196 CYS A 217 1555 1555 2.03 SSBOND 3 CYS A 409 CYS A 418 1555 1555 2.03 SSBOND 4 CYS B 116 CYS B 121 1555 1555 2.04 SSBOND 5 CYS B 196 CYS B 217 1555 1555 2.03 SSBOND 6 CYS B 409 CYS B 418 1555 1555 2.03 CISPEP 1 GLY A 191 PHE A 192 0 -5.72 CISPEP 2 GLU A 315 PHE A 316 0 0.44 CISPEP 3 TRP A 570 GLU A 571 0 -6.11 CISPEP 4 GLY B 191 PHE B 192 0 -5.76 CISPEP 5 GLU B 315 PHE B 316 0 0.54 CISPEP 6 TRP B 570 GLU B 571 0 -7.50 CRYST1 60.267 64.283 83.522 91.74 91.18 112.91 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016593 0.007013 0.000633 0.00000 SCALE2 0.000000 0.016889 0.000703 0.00000 SCALE3 0.000000 0.000000 0.011986 0.00000