HEADER HYDROLASE 04-NOV-07 3B9B TITLE STRUCTURE OF THE E2 BERYLLIUM FLUORIDE COMPLEX OF THE SERCA CA2+- TITLE 2 ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM PUMP 1, SERCA1, SR CA2+, -ATPASE 1, CALCIUM- COMPND 5 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL COMPND 6 MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA2+, ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: FAST TWITCH SKELETAL MUSCLE KEYWDS P-TYPE ATPASE, CA2+-ATPASE, MEMBRANE PROTEIN, BERYLLIUM FLUORIDE, KEYWDS 2 ALTERNATIVE SPLICING, ATP-BINDING, CALCIUM, CALCIUM TRANSPORT, KEYWDS 3 ENDOPLASMIC RETICULUM, HYDROLASE, ION TRANSPORT, MAGNESIUM, METAL- KEYWDS 4 BINDING, NUCLEOTIDE-BINDING, PHOSPHORYLATION, SARCOPLASMIC KEYWDS 5 RETICULUM, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.OLESEN,M.PICARD,A.M.L.WINTHER,J.P.MORTH,J.V.MOLLER,P.NISSEN REVDAT 4 01-NOV-23 3B9B 1 REMARK REVDAT 3 19-MAY-09 3B9B 1 REMARK REVDAT 2 24-FEB-09 3B9B 1 VERSN REVDAT 1 18-DEC-07 3B9B 0 JRNL AUTH C.OLESEN,M.PICARD,A.M.L.WINTHER,C.GYRUP,J.P.MORTH,C.OXVIG, JRNL AUTH 2 J.V.MOLLER,P.NISSEN JRNL TITL THE STRUCTURAL BASIS OF CALCIUM TRANSPORT BY THE CALCIUM JRNL TITL 2 PUMP. JRNL REF NATURE V. 450 1036 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 18075584 JRNL DOI 10.1038/NATURE06418 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 44754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3530 - 5.6970 0.99 4590 144 0.2170 0.2540 REMARK 3 2 5.6970 - 4.5270 1.00 4430 136 0.1830 0.2330 REMARK 3 3 4.5270 - 3.9560 0.99 4366 136 0.1650 0.2070 REMARK 3 4 3.9560 - 3.5950 0.99 4326 133 0.1820 0.2450 REMARK 3 5 3.5950 - 3.3380 0.99 4307 132 0.2010 0.2870 REMARK 3 6 3.3380 - 3.1410 0.99 4322 133 0.2250 0.2960 REMARK 3 7 3.1410 - 2.9840 0.99 4264 133 0.2440 0.3320 REMARK 3 8 2.9840 - 2.8550 0.99 4271 132 0.2620 0.3080 REMARK 3 9 2.8550 - 2.7450 1.00 4279 132 0.2920 0.3710 REMARK 3 10 2.7450 - 2.6500 0.99 4254 134 0.3190 0.3600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7816 REMARK 3 ANGLE : 1.090 10597 REMARK 3 CHIRALITY : 0.074 1235 REMARK 3 PLANARITY : 0.005 1358 REMARK 3 DIHEDRAL : 18.665 2878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1-43 OR RESID 123-228 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3086 -15.6276-116.9365 REMARK 3 T TENSOR REMARK 3 T11: -0.4150 T22: -0.5071 REMARK 3 T33: 0.1565 T12: 0.0785 REMARK 3 T13: -0.1149 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0015 REMARK 3 L33: -0.0091 L12: 0.0000 REMARK 3 L13: 0.0051 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.1601 S12: -0.0522 S13: -0.1693 REMARK 3 S21: -0.1093 S22: 0.1235 S23: 0.0502 REMARK 3 S31: -0.0100 S32: 0.0100 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 330-359 OR RESID 605-745 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6394 -0.1319-102.2208 REMARK 3 T TENSOR REMARK 3 T11: -0.1005 T22: 0.0688 REMARK 3 T33: 0.0920 T12: 0.0457 REMARK 3 T13: -0.0472 T23: 0.0739 REMARK 3 L TENSOR REMARK 3 L11: 0.0124 L22: 0.0093 REMARK 3 L33: 0.0153 L12: -0.0011 REMARK 3 L13: 0.0042 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.0222 S13: -0.2252 REMARK 3 S21: 0.0898 S22: 0.0534 S23: -0.1208 REMARK 3 S31: -0.1364 S32: -0.0265 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 360-604 REMARK 3 ORIGIN FOR THE GROUP (A): -38.4275 18.0262-125.6197 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.0507 REMARK 3 T33: 0.0718 T12: -0.0118 REMARK 3 T13: -0.0111 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0684 L22: 0.0554 REMARK 3 L33: 0.0267 L12: -0.0402 REMARK 3 L13: 0.0090 L23: 0.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0104 S13: -0.0082 REMARK 3 S21: -0.0338 S22: 0.0072 S23: 0.0254 REMARK 3 S31: -0.0384 S32: 0.0125 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 44-122 OR RESID 229-329 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7936 -11.8123 -68.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: -0.0549 REMARK 3 T33: -0.5364 T12: 0.2012 REMARK 3 T13: -0.2619 T23: 0.4983 REMARK 3 L TENSOR REMARK 3 L11: -0.0530 L22: 0.0015 REMARK 3 L33: -0.0006 L12: -0.0280 REMARK 3 L13: 0.0213 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.0248 S13: -0.0525 REMARK 3 S21: 0.1814 S22: -0.0310 S23: 0.1512 REMARK 3 S31: 0.0640 S32: -0.0863 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 746-868 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7789 3.3057 -60.7618 REMARK 3 T TENSOR REMARK 3 T11: 0.6764 T22: 0.4489 REMARK 3 T33: 0.1599 T12: 0.1400 REMARK 3 T13: -0.0997 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 0.0183 REMARK 3 L33: 0.0113 L12: -0.0132 REMARK 3 L13: 0.0064 L23: 0.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.1383 S13: -0.0776 REMARK 3 S21: 0.0634 S22: 0.1482 S23: -0.0989 REMARK 3 S31: -0.0203 S32: -0.0009 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 869-994 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8640 8.8344 -50.0897 REMARK 3 T TENSOR REMARK 3 T11: 0.3925 T22: -0.0237 REMARK 3 T33: -0.4396 T12: 0.3150 REMARK 3 T13: -0.3838 T23: 0.3396 REMARK 3 L TENSOR REMARK 3 L11: 0.0161 L22: -0.0036 REMARK 3 L33: 0.0074 L12: -0.0058 REMARK 3 L13: 0.0083 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0224 S13: -0.0805 REMARK 3 S21: -0.0500 S22: -0.0211 S23: -0.0051 REMARK 3 S31: -0.0688 S32: -0.0369 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PHENIX.REFINE USED FOR REFINEMENT REMARK 4 REMARK 4 3B9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : PT COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.27400 REMARK 200 R SYM (I) : 0.27400 REMARK 200 FOR THE DATA SET : 9.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 1.24600 REMARK 200 R SYM FOR SHELL (I) : 1.24600 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, RESOLVE REMARK 200 STARTING MODEL: 1XP5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG6000, 50MM MGSO4, 10% GLYCEROL, REMARK 280 4% DMSO, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 87 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -156.80 -88.98 REMARK 500 ASN A 39 86.55 -48.69 REMARK 500 GLU A 45 4.77 -66.97 REMARK 500 LYS A 47 88.39 -154.01 REMARK 500 PHE A 78 15.40 52.94 REMARK 500 GLU A 80 92.62 -160.47 REMARK 500 ILE A 85 61.54 -63.79 REMARK 500 TYR A 122 -149.41 -114.47 REMARK 500 GLU A 123 -60.38 -90.75 REMARK 500 ASP A 133 -74.79 -50.51 REMARK 500 ASP A 196 122.67 -27.50 REMARK 500 VAL A 269 -86.49 -65.65 REMARK 500 ALA A 270 -56.88 -13.13 REMARK 500 ILE A 293 -11.28 -157.55 REMARK 500 ALA A 303 -76.09 -43.43 REMARK 500 VAL A 304 -30.22 -39.82 REMARK 500 LEU A 319 -73.85 -53.82 REMARK 500 ALA A 320 -35.29 -37.05 REMARK 500 ASN A 330 38.02 76.27 REMARK 500 LYS A 352 -80.05 -93.77 REMARK 500 THR A 355 -75.46 -98.96 REMARK 500 MET A 361 119.89 -36.15 REMARK 500 GLU A 486 141.36 -38.43 REMARK 500 PHE A 487 158.86 -37.93 REMARK 500 VAL A 508 -4.41 69.90 REMARK 500 ASN A 510 56.27 -95.85 REMARK 500 THR A 558 78.59 -108.62 REMARK 500 PRO A 571 -179.76 -63.09 REMARK 500 VAL A 594 -61.44 -102.77 REMARK 500 GLU A 644 -77.08 -14.95 REMARK 500 VAL A 648 43.69 -106.01 REMARK 500 ALA A 649 -91.40 -46.06 REMARK 500 CYS A 674 10.19 -141.38 REMARK 500 ASP A 695 29.51 49.80 REMARK 500 ASP A 703 -35.03 -135.68 REMARK 500 MET A 757 -70.32 -53.63 REMARK 500 LYS A 758 -35.60 -34.05 REMARK 500 VAL A 798 -81.17 -98.82 REMARK 500 PRO A 820 -179.96 -65.91 REMARK 500 PHE A 834 -70.71 -65.44 REMARK 500 GLU A 878 103.41 -38.03 REMARK 500 PHE A 883 59.28 -118.45 REMARK 500 LEU A 904 -78.28 -57.81 REMARK 500 VAL A 905 -65.31 -29.68 REMARK 500 ASN A 919 -13.65 -142.14 REMARK 500 SER A 921 153.58 -37.84 REMARK 500 ARG A 924 -86.19 -45.17 REMARK 500 ASP A 951 -74.81 -4.96 REMARK 500 ARG A 989 -28.76 -143.19 REMARK 500 LEU A 992 -81.59 -78.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 996 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD1 REMARK 620 2 THR A 353 O 80.1 REMARK 620 3 ASP A 703 OD1 82.0 71.0 REMARK 620 4 HOH A 999 O 153.0 75.4 79.4 REMARK 620 5 HOH A1000 O 110.3 155.0 87.5 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 998 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD2 REMARK 620 2 BEF A 998 F1 97.5 REMARK 620 3 BEF A 998 F2 114.0 109.4 REMARK 620 4 BEF A 998 F3 113.0 112.5 110.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T5T RELATED DB: PDB REMARK 900 CA2E1:ADP:ALF4- COMPLEX, OCCLUDED WITH TWO BOUND CA2+ IONS REMARK 900 RELATED ID: 1XP5 RELATED DB: PDB REMARK 900 E2:ALF4- COMPLEX, OCCLUDED WITH 2-3 BOUND PROTONS REMARK 900 RELATED ID: 2C88 RELATED DB: PDB REMARK 900 E2:AMPPCP COMPLEX, OCCLUDED E2 STATE PRIOR TO E1 TRANSITION WITH REMARK 900 CA2+ BINDING REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS ISOFORM SERCA1A. DBREF 3B9B A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET NA A 995 1 HET MG A 996 1 HET MG A 997 1 HET BEF A 998 4 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 2 NA NA 1+ FORMUL 3 MG 2(MG 2+) FORMUL 5 BEF BE F3 1- FORMUL 6 HOH *65(H2 O) HELIX 1 1 ALA A 3 LYS A 7 5 5 HELIX 2 2 SER A 8 GLY A 17 1 10 HELIX 3 3 THR A 25 GLY A 37 1 13 HELIX 4 4 LEU A 49 GLU A 55 5 7 HELIX 5 5 ASP A 59 VAL A 74 1 16 HELIX 6 6 PHE A 88 GLU A 117 1 30 HELIX 7 7 ALA A 118 LYS A 120 5 3 HELIX 8 8 ARG A 143 ILE A 145 5 3 HELIX 9 9 GLN A 177 GLY A 182 1 6 HELIX 10 10 THR A 226 SER A 229 5 4 HELIX 11 11 THR A 230 ALA A 241 1 12 HELIX 12 12 THR A 247 ILE A 274 1 28 HELIX 13 13 ASN A 275 PHE A 279 5 5 HELIX 14 14 TYR A 294 VAL A 304 1 11 HELIX 15 15 ALA A 305 ILE A 307 5 3 HELIX 16 16 GLY A 310 LYS A 328 1 19 HELIX 17 17 PRO A 337 LEU A 342 1 6 HELIX 18 18 GLY A 343 THR A 345 5 3 HELIX 19 19 ARG A 403 GLN A 406 5 4 HELIX 20 20 PHE A 407 CYS A 420 1 14 HELIX 21 21 GLU A 439 ASN A 453 1 15 HELIX 22 22 SER A 463 ALA A 468 1 6 HELIX 23 23 ASN A 469 ARG A 476 1 8 HELIX 24 24 ALA A 517 ARG A 524 1 8 HELIX 25 25 THR A 538 GLY A 553 1 16 HELIX 26 26 ARG A 583 GLU A 588 1 6 HELIX 27 27 GLU A 606 ALA A 617 1 12 HELIX 28 28 ASN A 628 ILE A 639 1 12 HELIX 29 29 GLY A 655 LEU A 661 1 7 HELIX 30 30 PRO A 662 ALA A 673 1 12 HELIX 31 31 GLU A 680 SER A 693 1 14 HELIX 32 32 ASP A 707 ALA A 714 1 8 HELIX 33 33 THR A 724 SER A 731 1 8 HELIX 34 34 PHE A 740 GLY A 782 1 43 HELIX 35 35 ILE A 788 VAL A 798 1 11 HELIX 36 36 ASP A 800 ALA A 806 1 7 HELIX 37 37 LEU A 814 ASP A 818 5 5 HELIX 38 38 SER A 830 TYR A 858 1 29 HELIX 39 39 THR A 866 HIS A 872 1 7 HELIX 40 40 PHE A 873 CYS A 876 5 4 HELIX 41 41 ASP A 887 GLU A 892 5 6 HELIX 42 42 ALA A 893 SER A 915 1 23 HELIX 43 43 ASN A 930 VAL A 950 1 21 HELIX 44 44 ASP A 951 PHE A 957 1 7 HELIX 45 45 ASP A 963 LEU A 975 1 13 HELIX 46 46 LEU A 975 TYR A 991 1 17 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 ILE A 168 -1 N LEU A 166 O LEU A 220 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ALA A 215 N ARG A 174 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N GLY A 717 O MET A 733 SHEET 4 C 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 8 VAL A 347 SER A 350 1 N VAL A 347 O ALA A 699 SHEET 6 C 8 ARG A 620 ILE A 624 1 O ILE A 622 N SER A 350 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 ALA A 652 THR A 654 1 N TYR A 653 O CYS A 675 SHEET 1 D 9 LYS A 400 PRO A 401 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 D 9 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 5 D 9 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 6 D 9 ARG A 560 ARG A 567 -1 N ARG A 560 O MET A 599 SHEET 7 D 9 MET A 512 GLY A 516 -1 N VAL A 514 O ALA A 565 SHEET 8 D 9 SER A 493 PRO A 500 -1 N MET A 494 O LYS A 515 SHEET 9 D 9 MET A 479 LEU A 485 -1 N GLU A 482 O TYR A 497 SHEET 1 E 7 LYS A 400 PRO A 401 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 E 7 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 5 E 7 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 6 E 7 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 7 E 7 THR A 533 PRO A 536 -1 O THR A 533 N VAL A 530 SHEET 1 F 2 SER A 424 ASN A 428 0 SHEET 2 F 2 VAL A 433 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.04 LINK OE2 GLU A 90 MG MG A 997 1555 1555 2.47 LINK OD1 ASP A 351 MG MG A 996 1555 1555 2.37 LINK OD2 ASP A 351 BE BEF A 998 1555 1555 1.93 LINK O THR A 353 MG MG A 996 1555 1555 2.37 LINK OD1 ASP A 703 MG MG A 996 1555 1555 2.32 LINK MG MG A 996 O HOH A 999 1555 1555 2.42 LINK MG MG A 996 O HOH A1000 1555 1555 2.31 CISPEP 1 GLU A 121 TYR A 122 0 0.41 CISPEP 2 PRO A 282 VAL A 283 0 0.21 SITE 1 AC1 4 GLN A 244 LEU A 711 ALA A 714 GLY A 717 SITE 1 AC2 6 ASP A 351 THR A 353 ASP A 703 BEF A 998 SITE 2 AC2 6 HOH A 999 HOH A1000 SITE 1 AC3 5 GLU A 90 VAL A 304 GLU A 309 HOH A1062 SITE 2 AC3 5 HOH A1063 SITE 1 AC4 9 GLY A 182 ASP A 351 LYS A 352 THR A 353 SITE 2 AC4 9 THR A 625 GLY A 626 LYS A 684 ASN A 706 SITE 3 AC4 9 MG A 996 CRYST1 57.600 114.600 229.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004361 0.00000