data_3B9I # _entry.id 3B9I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3B9I pdb_00003b9i 10.2210/pdb3b9i/pdb RCSB RCSB045247 ? ? WWPDB D_1000045247 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2QDN _pdbx_database_related.details 'Structure from the refolded protein' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3B9I _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chattopadhyay, K.' 1 'Ramagopal, U.A.' 2 'Nathenson, S.G.' 3 'Almo, S.C.' 4 # _citation.id primary _citation.title 'Evolution of GITRL immune function: murine GITRL exhibits unique structural and biochemical properties within the TNF superfamily.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 635 _citation.page_last 640 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18182486 _citation.pdbx_database_id_DOI 10.1073/pnas.0710529105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chattopadhyay, K.' 1 ? primary 'Ramagopal, U.A.' 2 ? primary 'Brenowitz, M.' 3 ? primary 'Nathenson, S.G.' 4 ? primary 'Almo, S.C.' 5 ? # _cell.length_a 52.791 _cell.length_b 70.024 _cell.length_c 71.654 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3B9I _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3B9I _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GITR ligand' 15011.407 2 ? ? 'TNF homology domain' ? 2 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Glucocorticoid-induced-tumor necrosis factor receptor ligand' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMPTAIESCMVKFELSSSKWHMTSPKPHCVNTTSDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVLQ TLMNDFQILPIGGVYELHAGDNIYLKFNSKDHIQKTNTYWGIILMPDLPFIS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMPTAIESCMVKFELSSSKWHMTSPKPHCVNTTSDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVLQ TLMNDFQILPIGGVYELHAGDNIYLKFNSKDHIQKTNTYWGIILMPDLPFIS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 PRO n 1 6 THR n 1 7 ALA n 1 8 ILE n 1 9 GLU n 1 10 SER n 1 11 CYS n 1 12 MET n 1 13 VAL n 1 14 LYS n 1 15 PHE n 1 16 GLU n 1 17 LEU n 1 18 SER n 1 19 SER n 1 20 SER n 1 21 LYS n 1 22 TRP n 1 23 HIS n 1 24 MET n 1 25 THR n 1 26 SER n 1 27 PRO n 1 28 LYS n 1 29 PRO n 1 30 HIS n 1 31 CYS n 1 32 VAL n 1 33 ASN n 1 34 THR n 1 35 THR n 1 36 SER n 1 37 ASP n 1 38 GLY n 1 39 LYS n 1 40 LEU n 1 41 LYS n 1 42 ILE n 1 43 LEU n 1 44 GLN n 1 45 SER n 1 46 GLY n 1 47 THR n 1 48 TYR n 1 49 LEU n 1 50 ILE n 1 51 TYR n 1 52 GLY n 1 53 GLN n 1 54 VAL n 1 55 ILE n 1 56 PRO n 1 57 VAL n 1 58 ASP n 1 59 LYS n 1 60 LYS n 1 61 TYR n 1 62 ILE n 1 63 LYS n 1 64 ASP n 1 65 ASN n 1 66 ALA n 1 67 PRO n 1 68 PHE n 1 69 VAL n 1 70 VAL n 1 71 GLN n 1 72 ILE n 1 73 TYR n 1 74 LYS n 1 75 LYS n 1 76 ASN n 1 77 ASP n 1 78 VAL n 1 79 LEU n 1 80 GLN n 1 81 THR n 1 82 LEU n 1 83 MET n 1 84 ASN n 1 85 ASP n 1 86 PHE n 1 87 GLN n 1 88 ILE n 1 89 LEU n 1 90 PRO n 1 91 ILE n 1 92 GLY n 1 93 GLY n 1 94 VAL n 1 95 TYR n 1 96 GLU n 1 97 LEU n 1 98 HIS n 1 99 ALA n 1 100 GLY n 1 101 ASP n 1 102 ASN n 1 103 ILE n 1 104 TYR n 1 105 LEU n 1 106 LYS n 1 107 PHE n 1 108 ASN n 1 109 SER n 1 110 LYS n 1 111 ASP n 1 112 HIS n 1 113 ILE n 1 114 GLN n 1 115 LYS n 1 116 THR n 1 117 ASN n 1 118 THR n 1 119 TYR n 1 120 TRP n 1 121 GLY n 1 122 ILE n 1 123 ILE n 1 124 LEU n 1 125 MET n 1 126 PRO n 1 127 ASP n 1 128 LEU n 1 129 PRO n 1 130 PHE n 1 131 ILE n 1 132 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Tnfsf18, Gitrl' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-14b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7TS55_MOUSE _struct_ref.pdbx_db_accession Q7TS55 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PTAIESCMVKFELSSSKWHMTSPKPHCVNTTSDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVLQTLMN DFQILPIGGVYELHAGDNIYLKFNSKDHIQKTNTYWGIILMPDLPFIS ; _struct_ref.pdbx_align_begin 46 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3B9I A 5 ? 132 ? Q7TS55 46 ? 173 ? 46 173 2 1 3B9I B 5 ? 132 ? Q7TS55 46 ? 173 ? 46 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B9I GLY A 1 ? UNP Q7TS55 ? ? 'expression tag' 42 1 1 3B9I SER A 2 ? UNP Q7TS55 ? ? 'expression tag' 43 2 1 3B9I HIS A 3 ? UNP Q7TS55 ? ? 'expression tag' 44 3 1 3B9I MET A 4 ? UNP Q7TS55 ? ? 'expression tag' 45 4 2 3B9I GLY B 1 ? UNP Q7TS55 ? ? 'expression tag' 42 5 2 3B9I SER B 2 ? UNP Q7TS55 ? ? 'expression tag' 43 6 2 3B9I HIS B 3 ? UNP Q7TS55 ? ? 'expression tag' 44 7 2 3B9I MET B 4 ? UNP Q7TS55 ? ? 'expression tag' 45 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3B9I _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;30% Pentaerythritol Ethoxylate(15/4 EO/OH), 0.05M Ammonium Sulfate and 0.05M Bis-Tris (pH 6.5), Vapor diffusion, Sitting drop, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2007-08-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3B9I _reflns.d_resolution_high 2.49 _reflns.d_resolution_low 50.0 _reflns.number_obs 9637 _reflns.pdbx_Rmerge_I_obs 0.140 _reflns.pdbx_netI_over_sigmaI 5.900 _reflns.pdbx_chi_squared 1.174 _reflns.pdbx_redundancy 5.100 _reflns.percent_possible_obs 99.200 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 9637 _reflns.pdbx_Rsym_value 0.108 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.49 _reflns_shell.d_res_low 2.59 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.525 _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_Rsym_value 0.487 _reflns_shell.pdbx_chi_squared 1.014 _reflns_shell.pdbx_redundancy 5.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 923 _reflns_shell.percent_possible_all 98.40 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3B9I _refine.ls_d_res_high 2.490 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.860 _refine.ls_number_reflns_obs 9608 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.248 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 463 _refine.B_iso_mean 23.445 _refine.aniso_B[1][1] -0.590 _refine.aniso_B[2][2] 0.030 _refine.aniso_B[3][3] 0.560 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.901 _refine.pdbx_overall_ESU_R 0.681 _refine.pdbx_overall_ESU_R_Free 0.298 _refine.overall_SU_ML 0.192 _refine.overall_SU_B 8.662 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct . _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 9608 _refine.ls_R_factor_all 0.189 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 2QDN _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1982 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 2041 _refine_hist.d_res_high 2.490 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2036 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2762 1.326 1.963 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 244 6.693 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 82 38.786 25.610 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 370 16.315 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 308 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1494 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 845 0.195 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1389 0.325 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 157 0.203 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 20 0.144 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.292 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1271 2.142 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2016 3.212 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 893 2.361 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 746 3.439 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.49 _refine_ls_shell.d_res_low 2.557 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.360 _refine_ls_shell.number_reflns_R_work 612 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.247 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 647 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B9I _struct.title 'Crystal Structure of mouse GITRL at 2.5 A.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B9I _struct_keywords.text 'GITRL; Glucocorticoid-Induced TNF Receptor Ligand, CYTOKINE, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords CYTOKINE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 58 ? ILE A 62 ? ASP A 99 ILE A 103 5 ? 5 HELX_P HELX_P2 2 ASP B 58 ? ILE B 62 ? ASP B 99 ILE B 103 5 ? 5 HELX_P HELX_P3 3 SER B 109 ? ILE B 113 ? SER B 150 ILE B 154 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 52 A CYS 72 1_555 ? ? ? ? ? ? ? 1.996 ? ? disulf2 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 31 SG ? ? B CYS 52 B CYS 72 1_555 ? ? ? ? ? ? ? 2.012 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? D ? 6 ? E ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 21 ? MET A 24 ? LYS A 62 MET A 65 A 2 MET A 12 ? GLU A 16 ? MET A 53 GLU A 57 A 3 TYR A 119 ? LEU A 124 ? TYR A 160 LEU A 165 A 4 GLY A 46 ? VAL A 54 ? GLY A 87 VAL A 95 A 5 LEU A 89 ? PRO A 90 ? LEU A 130 PRO A 131 B 1 LYS A 21 ? MET A 24 ? LYS A 62 MET A 65 B 2 MET A 12 ? GLU A 16 ? MET A 53 GLU A 57 B 3 TYR A 119 ? LEU A 124 ? TYR A 160 LEU A 165 B 4 GLY A 46 ? VAL A 54 ? GLY A 87 VAL A 95 B 5 GLY A 93 ? LEU A 97 ? GLY A 134 LEU A 138 C 1 VAL A 32 ? THR A 34 ? VAL A 73 THR A 75 C 2 LEU A 40 ? ILE A 42 ? LEU A 81 ILE A 83 C 3 ASN A 102 ? PHE A 107 ? ASN A 143 PHE A 148 C 4 VAL A 69 ? LYS A 74 ? VAL A 110 LYS A 115 C 5 ASP A 77 ? MET A 83 ? ASP A 118 MET A 124 D 1 PHE A 130 ? SER A 132 ? PHE A 171 SER A 173 D 2 LYS B 21 ? MET B 24 ? LYS B 62 MET B 65 D 3 MET B 12 ? GLU B 16 ? MET B 53 GLU B 57 D 4 TYR B 119 ? LEU B 124 ? TYR B 160 LEU B 165 D 5 GLY B 46 ? VAL B 54 ? GLY B 87 VAL B 95 D 6 LEU B 89 ? LEU B 97 ? LEU B 130 LEU B 138 E 1 VAL B 32 ? THR B 34 ? VAL B 73 THR B 75 E 2 LEU B 40 ? ILE B 42 ? LEU B 81 ILE B 83 E 3 ASN B 102 ? PHE B 107 ? ASN B 143 PHE B 148 E 4 VAL B 69 ? LYS B 74 ? VAL B 110 LYS B 115 E 5 ASP B 77 ? MET B 83 ? ASP B 118 MET B 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 23 ? O HIS A 64 N LYS A 14 ? N LYS A 55 A 2 3 N PHE A 15 ? N PHE A 56 O TRP A 120 ? O TRP A 161 A 3 4 O ILE A 123 ? O ILE A 164 N LEU A 49 ? N LEU A 90 A 4 5 N VAL A 54 ? N VAL A 95 O LEU A 89 ? O LEU A 130 B 1 2 O HIS A 23 ? O HIS A 64 N LYS A 14 ? N LYS A 55 B 2 3 N PHE A 15 ? N PHE A 56 O TRP A 120 ? O TRP A 161 B 3 4 O ILE A 123 ? O ILE A 164 N LEU A 49 ? N LEU A 90 B 4 5 N TYR A 48 ? N TYR A 89 O TYR A 95 ? O TYR A 136 C 1 2 N ASN A 33 ? N ASN A 74 O LYS A 41 ? O LYS A 82 C 2 3 N LEU A 40 ? N LEU A 81 O ILE A 103 ? O ILE A 144 C 3 4 O TYR A 104 ? O TYR A 145 N TYR A 73 ? N TYR A 114 C 4 5 N VAL A 70 ? N VAL A 111 O LEU A 82 ? O LEU A 123 D 1 2 N SER A 132 ? N SER A 173 O TRP B 22 ? O TRP B 63 D 2 3 O HIS B 23 ? O HIS B 64 N LYS B 14 ? N LYS B 55 D 3 4 N PHE B 15 ? N PHE B 56 O TRP B 120 ? O TRP B 161 D 4 5 O TYR B 119 ? O TYR B 160 N GLN B 53 ? N GLN B 94 D 5 6 N TYR B 48 ? N TYR B 89 O TYR B 95 ? O TYR B 136 E 1 2 N ASN B 33 ? N ASN B 74 O LYS B 41 ? O LYS B 82 E 2 3 N LEU B 40 ? N LEU B 81 O ILE B 103 ? O ILE B 144 E 3 4 O TYR B 104 ? O TYR B 145 N TYR B 73 ? N TYR B 114 E 4 5 N ILE B 72 ? N ILE B 113 O LEU B 79 ? O LEU B 120 # _atom_sites.entry_id 3B9I _atom_sites.fract_transf_matrix[1][1] 0.018943 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014281 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013956 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 42 ? ? ? A . n A 1 2 SER 2 43 ? ? ? A . n A 1 3 HIS 3 44 ? ? ? A . n A 1 4 MET 4 45 ? ? ? A . n A 1 5 PRO 5 46 ? ? ? A . n A 1 6 THR 6 47 ? ? ? A . n A 1 7 ALA 7 48 ? ? ? A . n A 1 8 ILE 8 49 ? ? ? A . n A 1 9 GLU 9 50 ? ? ? A . n A 1 10 SER 10 51 51 SER SER A . n A 1 11 CYS 11 52 52 CYS CYS A . n A 1 12 MET 12 53 53 MET MET A . n A 1 13 VAL 13 54 54 VAL VAL A . n A 1 14 LYS 14 55 55 LYS LYS A . n A 1 15 PHE 15 56 56 PHE PHE A . n A 1 16 GLU 16 57 57 GLU GLU A . n A 1 17 LEU 17 58 58 LEU LEU A . n A 1 18 SER 18 59 59 SER SER A . n A 1 19 SER 19 60 60 SER SER A . n A 1 20 SER 20 61 61 SER SER A . n A 1 21 LYS 21 62 62 LYS LYS A . n A 1 22 TRP 22 63 63 TRP TRP A . n A 1 23 HIS 23 64 64 HIS HIS A . n A 1 24 MET 24 65 65 MET MET A . n A 1 25 THR 25 66 66 THR THR A . n A 1 26 SER 26 67 67 SER SER A . n A 1 27 PRO 27 68 68 PRO PRO A . n A 1 28 LYS 28 69 69 LYS LYS A . n A 1 29 PRO 29 70 70 PRO PRO A . n A 1 30 HIS 30 71 71 HIS HIS A . n A 1 31 CYS 31 72 72 CYS CYS A . n A 1 32 VAL 32 73 73 VAL VAL A . n A 1 33 ASN 33 74 74 ASN ASN A . n A 1 34 THR 34 75 75 THR THR A . n A 1 35 THR 35 76 76 THR THR A . n A 1 36 SER 36 77 77 SER SER A . n A 1 37 ASP 37 78 78 ASP ASP A . n A 1 38 GLY 38 79 79 GLY GLY A . n A 1 39 LYS 39 80 80 LYS LYS A . n A 1 40 LEU 40 81 81 LEU LEU A . n A 1 41 LYS 41 82 82 LYS LYS A . n A 1 42 ILE 42 83 83 ILE ILE A . n A 1 43 LEU 43 84 84 LEU LEU A . n A 1 44 GLN 44 85 85 GLN GLN A . n A 1 45 SER 45 86 86 SER SER A . n A 1 46 GLY 46 87 87 GLY GLY A . n A 1 47 THR 47 88 88 THR THR A . n A 1 48 TYR 48 89 89 TYR TYR A . n A 1 49 LEU 49 90 90 LEU LEU A . n A 1 50 ILE 50 91 91 ILE ILE A . n A 1 51 TYR 51 92 92 TYR TYR A . n A 1 52 GLY 52 93 93 GLY GLY A . n A 1 53 GLN 53 94 94 GLN GLN A . n A 1 54 VAL 54 95 95 VAL VAL A . n A 1 55 ILE 55 96 96 ILE ILE A . n A 1 56 PRO 56 97 97 PRO PRO A . n A 1 57 VAL 57 98 98 VAL VAL A . n A 1 58 ASP 58 99 99 ASP ASP A . n A 1 59 LYS 59 100 100 LYS LYS A . n A 1 60 LYS 60 101 101 LYS LYS A . n A 1 61 TYR 61 102 102 TYR TYR A . n A 1 62 ILE 62 103 103 ILE ILE A . n A 1 63 LYS 63 104 104 LYS LYS A . n A 1 64 ASP 64 105 105 ASP ASP A . n A 1 65 ASN 65 106 106 ASN ASN A . n A 1 66 ALA 66 107 107 ALA ALA A . n A 1 67 PRO 67 108 108 PRO PRO A . n A 1 68 PHE 68 109 109 PHE PHE A . n A 1 69 VAL 69 110 110 VAL VAL A . n A 1 70 VAL 70 111 111 VAL VAL A . n A 1 71 GLN 71 112 112 GLN GLN A . n A 1 72 ILE 72 113 113 ILE ILE A . n A 1 73 TYR 73 114 114 TYR TYR A . n A 1 74 LYS 74 115 115 LYS LYS A . n A 1 75 LYS 75 116 116 LYS LYS A . n A 1 76 ASN 76 117 117 ASN ASN A . n A 1 77 ASP 77 118 118 ASP ASP A . n A 1 78 VAL 78 119 119 VAL VAL A . n A 1 79 LEU 79 120 120 LEU LEU A . n A 1 80 GLN 80 121 121 GLN GLN A . n A 1 81 THR 81 122 122 THR THR A . n A 1 82 LEU 82 123 123 LEU LEU A . n A 1 83 MET 83 124 124 MET MET A . n A 1 84 ASN 84 125 125 ASN ASN A . n A 1 85 ASP 85 126 126 ASP ASP A . n A 1 86 PHE 86 127 127 PHE PHE A . n A 1 87 GLN 87 128 128 GLN GLN A . n A 1 88 ILE 88 129 129 ILE ILE A . n A 1 89 LEU 89 130 130 LEU LEU A . n A 1 90 PRO 90 131 131 PRO PRO A . n A 1 91 ILE 91 132 132 ILE ILE A . n A 1 92 GLY 92 133 133 GLY GLY A . n A 1 93 GLY 93 134 134 GLY GLY A . n A 1 94 VAL 94 135 135 VAL VAL A . n A 1 95 TYR 95 136 136 TYR TYR A . n A 1 96 GLU 96 137 137 GLU GLU A . n A 1 97 LEU 97 138 138 LEU LEU A . n A 1 98 HIS 98 139 139 HIS HIS A . n A 1 99 ALA 99 140 140 ALA ALA A . n A 1 100 GLY 100 141 141 GLY GLY A . n A 1 101 ASP 101 142 142 ASP ASP A . n A 1 102 ASN 102 143 143 ASN ASN A . n A 1 103 ILE 103 144 144 ILE ILE A . n A 1 104 TYR 104 145 145 TYR TYR A . n A 1 105 LEU 105 146 146 LEU LEU A . n A 1 106 LYS 106 147 147 LYS LYS A . n A 1 107 PHE 107 148 148 PHE PHE A . n A 1 108 ASN 108 149 149 ASN ASN A . n A 1 109 SER 109 150 150 SER SER A . n A 1 110 LYS 110 151 151 LYS LYS A . n A 1 111 ASP 111 152 152 ASP ASP A . n A 1 112 HIS 112 153 153 HIS HIS A . n A 1 113 ILE 113 154 154 ILE ILE A . n A 1 114 GLN 114 155 155 GLN GLN A . n A 1 115 LYS 115 156 156 LYS LYS A . n A 1 116 THR 116 157 157 THR THR A . n A 1 117 ASN 117 158 158 ASN ASN A . n A 1 118 THR 118 159 159 THR THR A . n A 1 119 TYR 119 160 160 TYR TYR A . n A 1 120 TRP 120 161 161 TRP TRP A . n A 1 121 GLY 121 162 162 GLY GLY A . n A 1 122 ILE 122 163 163 ILE ILE A . n A 1 123 ILE 123 164 164 ILE ILE A . n A 1 124 LEU 124 165 165 LEU LEU A . n A 1 125 MET 125 166 166 MET MET A . n A 1 126 PRO 126 167 167 PRO PRO A . n A 1 127 ASP 127 168 168 ASP ASP A . n A 1 128 LEU 128 169 169 LEU LEU A . n A 1 129 PRO 129 170 170 PRO PRO A . n A 1 130 PHE 130 171 171 PHE PHE A . n A 1 131 ILE 131 172 172 ILE ILE A . n A 1 132 SER 132 173 173 SER SER A . n B 1 1 GLY 1 42 ? ? ? B . n B 1 2 SER 2 43 ? ? ? B . n B 1 3 HIS 3 44 ? ? ? B . n B 1 4 MET 4 45 ? ? ? B . n B 1 5 PRO 5 46 ? ? ? B . n B 1 6 THR 6 47 ? ? ? B . n B 1 7 ALA 7 48 ? ? ? B . n B 1 8 ILE 8 49 ? ? ? B . n B 1 9 GLU 9 50 ? ? ? B . n B 1 10 SER 10 51 51 SER SER B . n B 1 11 CYS 11 52 52 CYS CYS B . n B 1 12 MET 12 53 53 MET MET B . n B 1 13 VAL 13 54 54 VAL VAL B . n B 1 14 LYS 14 55 55 LYS LYS B . n B 1 15 PHE 15 56 56 PHE PHE B . n B 1 16 GLU 16 57 57 GLU GLU B . n B 1 17 LEU 17 58 58 LEU LEU B . n B 1 18 SER 18 59 59 SER SER B . n B 1 19 SER 19 60 60 SER SER B . n B 1 20 SER 20 61 61 SER SER B . n B 1 21 LYS 21 62 62 LYS LYS B . n B 1 22 TRP 22 63 63 TRP TRP B . n B 1 23 HIS 23 64 64 HIS HIS B . n B 1 24 MET 24 65 65 MET MET B . n B 1 25 THR 25 66 66 THR THR B . n B 1 26 SER 26 67 67 SER SER B . n B 1 27 PRO 27 68 68 PRO PRO B . n B 1 28 LYS 28 69 69 LYS LYS B . n B 1 29 PRO 29 70 70 PRO PRO B . n B 1 30 HIS 30 71 71 HIS HIS B . n B 1 31 CYS 31 72 72 CYS CYS B . n B 1 32 VAL 32 73 73 VAL VAL B . n B 1 33 ASN 33 74 74 ASN ASN B . n B 1 34 THR 34 75 75 THR THR B . n B 1 35 THR 35 76 76 THR THR B . n B 1 36 SER 36 77 77 SER SER B . n B 1 37 ASP 37 78 78 ASP ASP B . n B 1 38 GLY 38 79 79 GLY GLY B . n B 1 39 LYS 39 80 80 LYS LYS B . n B 1 40 LEU 40 81 81 LEU LEU B . n B 1 41 LYS 41 82 82 LYS LYS B . n B 1 42 ILE 42 83 83 ILE ILE B . n B 1 43 LEU 43 84 84 LEU LEU B . n B 1 44 GLN 44 85 85 GLN GLN B . n B 1 45 SER 45 86 86 SER SER B . n B 1 46 GLY 46 87 87 GLY GLY B . n B 1 47 THR 47 88 88 THR THR B . n B 1 48 TYR 48 89 89 TYR TYR B . n B 1 49 LEU 49 90 90 LEU LEU B . n B 1 50 ILE 50 91 91 ILE ILE B . n B 1 51 TYR 51 92 92 TYR TYR B . n B 1 52 GLY 52 93 93 GLY GLY B . n B 1 53 GLN 53 94 94 GLN GLN B . n B 1 54 VAL 54 95 95 VAL VAL B . n B 1 55 ILE 55 96 96 ILE ILE B . n B 1 56 PRO 56 97 97 PRO PRO B . n B 1 57 VAL 57 98 98 VAL VAL B . n B 1 58 ASP 58 99 99 ASP ASP B . n B 1 59 LYS 59 100 100 LYS LYS B . n B 1 60 LYS 60 101 101 LYS LYS B . n B 1 61 TYR 61 102 102 TYR TYR B . n B 1 62 ILE 62 103 103 ILE ILE B . n B 1 63 LYS 63 104 104 LYS LYS B . n B 1 64 ASP 64 105 105 ASP ASP B . n B 1 65 ASN 65 106 106 ASN ASN B . n B 1 66 ALA 66 107 107 ALA ALA B . n B 1 67 PRO 67 108 108 PRO PRO B . n B 1 68 PHE 68 109 109 PHE PHE B . n B 1 69 VAL 69 110 110 VAL VAL B . n B 1 70 VAL 70 111 111 VAL VAL B . n B 1 71 GLN 71 112 112 GLN GLN B . n B 1 72 ILE 72 113 113 ILE ILE B . n B 1 73 TYR 73 114 114 TYR TYR B . n B 1 74 LYS 74 115 115 LYS LYS B . n B 1 75 LYS 75 116 116 LYS LYS B . n B 1 76 ASN 76 117 117 ASN ASN B . n B 1 77 ASP 77 118 118 ASP ASP B . n B 1 78 VAL 78 119 119 VAL VAL B . n B 1 79 LEU 79 120 120 LEU LEU B . n B 1 80 GLN 80 121 121 GLN GLN B . n B 1 81 THR 81 122 122 THR THR B . n B 1 82 LEU 82 123 123 LEU LEU B . n B 1 83 MET 83 124 124 MET MET B . n B 1 84 ASN 84 125 125 ASN ASN B . n B 1 85 ASP 85 126 126 ASP ASP B . n B 1 86 PHE 86 127 127 PHE PHE B . n B 1 87 GLN 87 128 128 GLN GLN B . n B 1 88 ILE 88 129 129 ILE ILE B . n B 1 89 LEU 89 130 130 LEU LEU B . n B 1 90 PRO 90 131 131 PRO PRO B . n B 1 91 ILE 91 132 132 ILE ILE B . n B 1 92 GLY 92 133 133 GLY GLY B . n B 1 93 GLY 93 134 134 GLY GLY B . n B 1 94 VAL 94 135 135 VAL VAL B . n B 1 95 TYR 95 136 136 TYR TYR B . n B 1 96 GLU 96 137 137 GLU GLU B . n B 1 97 LEU 97 138 138 LEU LEU B . n B 1 98 HIS 98 139 139 HIS HIS B . n B 1 99 ALA 99 140 140 ALA ALA B . n B 1 100 GLY 100 141 141 GLY GLY B . n B 1 101 ASP 101 142 142 ASP ASP B . n B 1 102 ASN 102 143 143 ASN ASN B . n B 1 103 ILE 103 144 144 ILE ILE B . n B 1 104 TYR 104 145 145 TYR TYR B . n B 1 105 LEU 105 146 146 LEU LEU B . n B 1 106 LYS 106 147 147 LYS LYS B . n B 1 107 PHE 107 148 148 PHE PHE B . n B 1 108 ASN 108 149 149 ASN ASN B . n B 1 109 SER 109 150 150 SER SER B . n B 1 110 LYS 110 151 151 LYS LYS B . n B 1 111 ASP 111 152 152 ASP ASP B . n B 1 112 HIS 112 153 153 HIS HIS B . n B 1 113 ILE 113 154 154 ILE ILE B . n B 1 114 GLN 114 155 155 GLN GLN B . n B 1 115 LYS 115 156 156 LYS LYS B . n B 1 116 THR 116 157 157 THR THR B . n B 1 117 ASN 117 158 158 ASN ASN B . n B 1 118 THR 118 159 159 THR THR B . n B 1 119 TYR 119 160 160 TYR TYR B . n B 1 120 TRP 120 161 161 TRP TRP B . n B 1 121 GLY 121 162 162 GLY GLY B . n B 1 122 ILE 122 163 163 ILE ILE B . n B 1 123 ILE 123 164 164 ILE ILE B . n B 1 124 LEU 124 165 165 LEU LEU B . n B 1 125 MET 125 166 166 MET MET B . n B 1 126 PRO 126 167 167 PRO PRO B . n B 1 127 ASP 127 168 168 ASP ASP B . n B 1 128 LEU 128 169 169 LEU LEU B . n B 1 129 PRO 129 170 170 PRO PRO B . n B 1 130 PHE 130 171 171 PHE PHE B . n B 1 131 ILE 131 172 172 ILE ILE B . n B 1 132 SER 132 173 173 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 174 5 HOH HOH A . C 2 HOH 2 175 6 HOH HOH A . C 2 HOH 3 176 7 HOH HOH A . C 2 HOH 4 177 8 HOH HOH A . C 2 HOH 5 178 12 HOH HOH A . C 2 HOH 6 179 13 HOH HOH A . C 2 HOH 7 180 14 HOH HOH A . C 2 HOH 8 181 15 HOH HOH A . C 2 HOH 9 182 16 HOH HOH A . C 2 HOH 10 183 17 HOH HOH A . C 2 HOH 11 184 18 HOH HOH A . C 2 HOH 12 185 21 HOH HOH A . C 2 HOH 13 186 22 HOH HOH A . C 2 HOH 14 187 25 HOH HOH A . C 2 HOH 15 188 26 HOH HOH A . C 2 HOH 16 189 29 HOH HOH A . C 2 HOH 17 190 30 HOH HOH A . C 2 HOH 18 191 31 HOH HOH A . C 2 HOH 19 192 33 HOH HOH A . C 2 HOH 20 193 34 HOH HOH A . C 2 HOH 21 194 35 HOH HOH A . C 2 HOH 22 195 36 HOH HOH A . C 2 HOH 23 196 38 HOH HOH A . C 2 HOH 24 197 41 HOH HOH A . C 2 HOH 25 198 43 HOH HOH A . C 2 HOH 26 199 49 HOH HOH A . C 2 HOH 27 200 50 HOH HOH A . C 2 HOH 28 201 53 HOH HOH A . C 2 HOH 29 202 55 HOH HOH A . C 2 HOH 30 203 56 HOH HOH A . C 2 HOH 31 204 57 HOH HOH A . C 2 HOH 32 205 59 HOH HOH A . C 2 HOH 33 206 60 HOH HOH A . D 2 HOH 1 174 1 HOH HOH B . D 2 HOH 2 175 2 HOH HOH B . D 2 HOH 3 176 3 HOH HOH B . D 2 HOH 4 177 4 HOH HOH B . D 2 HOH 5 178 9 HOH HOH B . D 2 HOH 6 179 10 HOH HOH B . D 2 HOH 7 180 11 HOH HOH B . D 2 HOH 8 181 19 HOH HOH B . D 2 HOH 9 182 20 HOH HOH B . D 2 HOH 10 183 23 HOH HOH B . D 2 HOH 11 184 24 HOH HOH B . D 2 HOH 12 185 27 HOH HOH B . D 2 HOH 13 186 28 HOH HOH B . D 2 HOH 14 187 32 HOH HOH B . D 2 HOH 15 188 37 HOH HOH B . D 2 HOH 16 189 39 HOH HOH B . D 2 HOH 17 190 40 HOH HOH B . D 2 HOH 18 191 42 HOH HOH B . D 2 HOH 19 192 44 HOH HOH B . D 2 HOH 20 193 45 HOH HOH B . D 2 HOH 21 194 46 HOH HOH B . D 2 HOH 22 195 47 HOH HOH B . D 2 HOH 23 196 51 HOH HOH B . D 2 HOH 24 197 52 HOH HOH B . D 2 HOH 25 198 54 HOH HOH B . D 2 HOH 26 199 58 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2910 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MOLREP . ? ? ? ? phasing ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 76 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 78 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 116 ? ? 49.67 -123.35 2 1 LYS B 116 ? ? 57.41 -106.19 3 1 ALA B 140 ? ? -38.62 118.58 4 1 LEU B 169 ? ? -117.82 76.54 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 42 ? A GLY 1 2 1 Y 1 A SER 43 ? A SER 2 3 1 Y 1 A HIS 44 ? A HIS 3 4 1 Y 1 A MET 45 ? A MET 4 5 1 Y 1 A PRO 46 ? A PRO 5 6 1 Y 1 A THR 47 ? A THR 6 7 1 Y 1 A ALA 48 ? A ALA 7 8 1 Y 1 A ILE 49 ? A ILE 8 9 1 Y 1 A GLU 50 ? A GLU 9 10 1 Y 1 B GLY 42 ? B GLY 1 11 1 Y 1 B SER 43 ? B SER 2 12 1 Y 1 B HIS 44 ? B HIS 3 13 1 Y 1 B MET 45 ? B MET 4 14 1 Y 1 B PRO 46 ? B PRO 5 15 1 Y 1 B THR 47 ? B THR 6 16 1 Y 1 B ALA 48 ? B ALA 7 17 1 Y 1 B ILE 49 ? B ILE 8 18 1 Y 1 B GLU 50 ? B GLU 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 GLN N N N N 61 GLN CA C N S 62 GLN C C N N 63 GLN O O N N 64 GLN CB C N N 65 GLN CG C N N 66 GLN CD C N N 67 GLN OE1 O N N 68 GLN NE2 N N N 69 GLN OXT O N N 70 GLN H H N N 71 GLN H2 H N N 72 GLN HA H N N 73 GLN HB2 H N N 74 GLN HB3 H N N 75 GLN HG2 H N N 76 GLN HG3 H N N 77 GLN HE21 H N N 78 GLN HE22 H N N 79 GLN HXT H N N 80 GLU N N N N 81 GLU CA C N S 82 GLU C C N N 83 GLU O O N N 84 GLU CB C N N 85 GLU CG C N N 86 GLU CD C N N 87 GLU OE1 O N N 88 GLU OE2 O N N 89 GLU OXT O N N 90 GLU H H N N 91 GLU H2 H N N 92 GLU HA H N N 93 GLU HB2 H N N 94 GLU HB3 H N N 95 GLU HG2 H N N 96 GLU HG3 H N N 97 GLU HE2 H N N 98 GLU HXT H N N 99 GLY N N N N 100 GLY CA C N N 101 GLY C C N N 102 GLY O O N N 103 GLY OXT O N N 104 GLY H H N N 105 GLY H2 H N N 106 GLY HA2 H N N 107 GLY HA3 H N N 108 GLY HXT H N N 109 HIS N N N N 110 HIS CA C N S 111 HIS C C N N 112 HIS O O N N 113 HIS CB C N N 114 HIS CG C Y N 115 HIS ND1 N Y N 116 HIS CD2 C Y N 117 HIS CE1 C Y N 118 HIS NE2 N Y N 119 HIS OXT O N N 120 HIS H H N N 121 HIS H2 H N N 122 HIS HA H N N 123 HIS HB2 H N N 124 HIS HB3 H N N 125 HIS HD1 H N N 126 HIS HD2 H N N 127 HIS HE1 H N N 128 HIS HE2 H N N 129 HIS HXT H N N 130 HOH O O N N 131 HOH H1 H N N 132 HOH H2 H N N 133 ILE N N N N 134 ILE CA C N S 135 ILE C C N N 136 ILE O O N N 137 ILE CB C N S 138 ILE CG1 C N N 139 ILE CG2 C N N 140 ILE CD1 C N N 141 ILE OXT O N N 142 ILE H H N N 143 ILE H2 H N N 144 ILE HA H N N 145 ILE HB H N N 146 ILE HG12 H N N 147 ILE HG13 H N N 148 ILE HG21 H N N 149 ILE HG22 H N N 150 ILE HG23 H N N 151 ILE HD11 H N N 152 ILE HD12 H N N 153 ILE HD13 H N N 154 ILE HXT H N N 155 LEU N N N N 156 LEU CA C N S 157 LEU C C N N 158 LEU O O N N 159 LEU CB C N N 160 LEU CG C N N 161 LEU CD1 C N N 162 LEU CD2 C N N 163 LEU OXT O N N 164 LEU H H N N 165 LEU H2 H N N 166 LEU HA H N N 167 LEU HB2 H N N 168 LEU HB3 H N N 169 LEU HG H N N 170 LEU HD11 H N N 171 LEU HD12 H N N 172 LEU HD13 H N N 173 LEU HD21 H N N 174 LEU HD22 H N N 175 LEU HD23 H N N 176 LEU HXT H N N 177 LYS N N N N 178 LYS CA C N S 179 LYS C C N N 180 LYS O O N N 181 LYS CB C N N 182 LYS CG C N N 183 LYS CD C N N 184 LYS CE C N N 185 LYS NZ N N N 186 LYS OXT O N N 187 LYS H H N N 188 LYS H2 H N N 189 LYS HA H N N 190 LYS HB2 H N N 191 LYS HB3 H N N 192 LYS HG2 H N N 193 LYS HG3 H N N 194 LYS HD2 H N N 195 LYS HD3 H N N 196 LYS HE2 H N N 197 LYS HE3 H N N 198 LYS HZ1 H N N 199 LYS HZ2 H N N 200 LYS HZ3 H N N 201 LYS HXT H N N 202 MET N N N N 203 MET CA C N S 204 MET C C N N 205 MET O O N N 206 MET CB C N N 207 MET CG C N N 208 MET SD S N N 209 MET CE C N N 210 MET OXT O N N 211 MET H H N N 212 MET H2 H N N 213 MET HA H N N 214 MET HB2 H N N 215 MET HB3 H N N 216 MET HG2 H N N 217 MET HG3 H N N 218 MET HE1 H N N 219 MET HE2 H N N 220 MET HE3 H N N 221 MET HXT H N N 222 PHE N N N N 223 PHE CA C N S 224 PHE C C N N 225 PHE O O N N 226 PHE CB C N N 227 PHE CG C Y N 228 PHE CD1 C Y N 229 PHE CD2 C Y N 230 PHE CE1 C Y N 231 PHE CE2 C Y N 232 PHE CZ C Y N 233 PHE OXT O N N 234 PHE H H N N 235 PHE H2 H N N 236 PHE HA H N N 237 PHE HB2 H N N 238 PHE HB3 H N N 239 PHE HD1 H N N 240 PHE HD2 H N N 241 PHE HE1 H N N 242 PHE HE2 H N N 243 PHE HZ H N N 244 PHE HXT H N N 245 PRO N N N N 246 PRO CA C N S 247 PRO C C N N 248 PRO O O N N 249 PRO CB C N N 250 PRO CG C N N 251 PRO CD C N N 252 PRO OXT O N N 253 PRO H H N N 254 PRO HA H N N 255 PRO HB2 H N N 256 PRO HB3 H N N 257 PRO HG2 H N N 258 PRO HG3 H N N 259 PRO HD2 H N N 260 PRO HD3 H N N 261 PRO HXT H N N 262 SER N N N N 263 SER CA C N S 264 SER C C N N 265 SER O O N N 266 SER CB C N N 267 SER OG O N N 268 SER OXT O N N 269 SER H H N N 270 SER H2 H N N 271 SER HA H N N 272 SER HB2 H N N 273 SER HB3 H N N 274 SER HG H N N 275 SER HXT H N N 276 THR N N N N 277 THR CA C N S 278 THR C C N N 279 THR O O N N 280 THR CB C N R 281 THR OG1 O N N 282 THR CG2 C N N 283 THR OXT O N N 284 THR H H N N 285 THR H2 H N N 286 THR HA H N N 287 THR HB H N N 288 THR HG1 H N N 289 THR HG21 H N N 290 THR HG22 H N N 291 THR HG23 H N N 292 THR HXT H N N 293 TRP N N N N 294 TRP CA C N S 295 TRP C C N N 296 TRP O O N N 297 TRP CB C N N 298 TRP CG C Y N 299 TRP CD1 C Y N 300 TRP CD2 C Y N 301 TRP NE1 N Y N 302 TRP CE2 C Y N 303 TRP CE3 C Y N 304 TRP CZ2 C Y N 305 TRP CZ3 C Y N 306 TRP CH2 C Y N 307 TRP OXT O N N 308 TRP H H N N 309 TRP H2 H N N 310 TRP HA H N N 311 TRP HB2 H N N 312 TRP HB3 H N N 313 TRP HD1 H N N 314 TRP HE1 H N N 315 TRP HE3 H N N 316 TRP HZ2 H N N 317 TRP HZ3 H N N 318 TRP HH2 H N N 319 TRP HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 GLN N CA sing N N 57 GLN N H sing N N 58 GLN N H2 sing N N 59 GLN CA C sing N N 60 GLN CA CB sing N N 61 GLN CA HA sing N N 62 GLN C O doub N N 63 GLN C OXT sing N N 64 GLN CB CG sing N N 65 GLN CB HB2 sing N N 66 GLN CB HB3 sing N N 67 GLN CG CD sing N N 68 GLN CG HG2 sing N N 69 GLN CG HG3 sing N N 70 GLN CD OE1 doub N N 71 GLN CD NE2 sing N N 72 GLN NE2 HE21 sing N N 73 GLN NE2 HE22 sing N N 74 GLN OXT HXT sing N N 75 GLU N CA sing N N 76 GLU N H sing N N 77 GLU N H2 sing N N 78 GLU CA C sing N N 79 GLU CA CB sing N N 80 GLU CA HA sing N N 81 GLU C O doub N N 82 GLU C OXT sing N N 83 GLU CB CG sing N N 84 GLU CB HB2 sing N N 85 GLU CB HB3 sing N N 86 GLU CG CD sing N N 87 GLU CG HG2 sing N N 88 GLU CG HG3 sing N N 89 GLU CD OE1 doub N N 90 GLU CD OE2 sing N N 91 GLU OE2 HE2 sing N N 92 GLU OXT HXT sing N N 93 GLY N CA sing N N 94 GLY N H sing N N 95 GLY N H2 sing N N 96 GLY CA C sing N N 97 GLY CA HA2 sing N N 98 GLY CA HA3 sing N N 99 GLY C O doub N N 100 GLY C OXT sing N N 101 GLY OXT HXT sing N N 102 HIS N CA sing N N 103 HIS N H sing N N 104 HIS N H2 sing N N 105 HIS CA C sing N N 106 HIS CA CB sing N N 107 HIS CA HA sing N N 108 HIS C O doub N N 109 HIS C OXT sing N N 110 HIS CB CG sing N N 111 HIS CB HB2 sing N N 112 HIS CB HB3 sing N N 113 HIS CG ND1 sing Y N 114 HIS CG CD2 doub Y N 115 HIS ND1 CE1 doub Y N 116 HIS ND1 HD1 sing N N 117 HIS CD2 NE2 sing Y N 118 HIS CD2 HD2 sing N N 119 HIS CE1 NE2 sing Y N 120 HIS CE1 HE1 sing N N 121 HIS NE2 HE2 sing N N 122 HIS OXT HXT sing N N 123 HOH O H1 sing N N 124 HOH O H2 sing N N 125 ILE N CA sing N N 126 ILE N H sing N N 127 ILE N H2 sing N N 128 ILE CA C sing N N 129 ILE CA CB sing N N 130 ILE CA HA sing N N 131 ILE C O doub N N 132 ILE C OXT sing N N 133 ILE CB CG1 sing N N 134 ILE CB CG2 sing N N 135 ILE CB HB sing N N 136 ILE CG1 CD1 sing N N 137 ILE CG1 HG12 sing N N 138 ILE CG1 HG13 sing N N 139 ILE CG2 HG21 sing N N 140 ILE CG2 HG22 sing N N 141 ILE CG2 HG23 sing N N 142 ILE CD1 HD11 sing N N 143 ILE CD1 HD12 sing N N 144 ILE CD1 HD13 sing N N 145 ILE OXT HXT sing N N 146 LEU N CA sing N N 147 LEU N H sing N N 148 LEU N H2 sing N N 149 LEU CA C sing N N 150 LEU CA CB sing N N 151 LEU CA HA sing N N 152 LEU C O doub N N 153 LEU C OXT sing N N 154 LEU CB CG sing N N 155 LEU CB HB2 sing N N 156 LEU CB HB3 sing N N 157 LEU CG CD1 sing N N 158 LEU CG CD2 sing N N 159 LEU CG HG sing N N 160 LEU CD1 HD11 sing N N 161 LEU CD1 HD12 sing N N 162 LEU CD1 HD13 sing N N 163 LEU CD2 HD21 sing N N 164 LEU CD2 HD22 sing N N 165 LEU CD2 HD23 sing N N 166 LEU OXT HXT sing N N 167 LYS N CA sing N N 168 LYS N H sing N N 169 LYS N H2 sing N N 170 LYS CA C sing N N 171 LYS CA CB sing N N 172 LYS CA HA sing N N 173 LYS C O doub N N 174 LYS C OXT sing N N 175 LYS CB CG sing N N 176 LYS CB HB2 sing N N 177 LYS CB HB3 sing N N 178 LYS CG CD sing N N 179 LYS CG HG2 sing N N 180 LYS CG HG3 sing N N 181 LYS CD CE sing N N 182 LYS CD HD2 sing N N 183 LYS CD HD3 sing N N 184 LYS CE NZ sing N N 185 LYS CE HE2 sing N N 186 LYS CE HE3 sing N N 187 LYS NZ HZ1 sing N N 188 LYS NZ HZ2 sing N N 189 LYS NZ HZ3 sing N N 190 LYS OXT HXT sing N N 191 MET N CA sing N N 192 MET N H sing N N 193 MET N H2 sing N N 194 MET CA C sing N N 195 MET CA CB sing N N 196 MET CA HA sing N N 197 MET C O doub N N 198 MET C OXT sing N N 199 MET CB CG sing N N 200 MET CB HB2 sing N N 201 MET CB HB3 sing N N 202 MET CG SD sing N N 203 MET CG HG2 sing N N 204 MET CG HG3 sing N N 205 MET SD CE sing N N 206 MET CE HE1 sing N N 207 MET CE HE2 sing N N 208 MET CE HE3 sing N N 209 MET OXT HXT sing N N 210 PHE N CA sing N N 211 PHE N H sing N N 212 PHE N H2 sing N N 213 PHE CA C sing N N 214 PHE CA CB sing N N 215 PHE CA HA sing N N 216 PHE C O doub N N 217 PHE C OXT sing N N 218 PHE CB CG sing N N 219 PHE CB HB2 sing N N 220 PHE CB HB3 sing N N 221 PHE CG CD1 doub Y N 222 PHE CG CD2 sing Y N 223 PHE CD1 CE1 sing Y N 224 PHE CD1 HD1 sing N N 225 PHE CD2 CE2 doub Y N 226 PHE CD2 HD2 sing N N 227 PHE CE1 CZ doub Y N 228 PHE CE1 HE1 sing N N 229 PHE CE2 CZ sing Y N 230 PHE CE2 HE2 sing N N 231 PHE CZ HZ sing N N 232 PHE OXT HXT sing N N 233 PRO N CA sing N N 234 PRO N CD sing N N 235 PRO N H sing N N 236 PRO CA C sing N N 237 PRO CA CB sing N N 238 PRO CA HA sing N N 239 PRO C O doub N N 240 PRO C OXT sing N N 241 PRO CB CG sing N N 242 PRO CB HB2 sing N N 243 PRO CB HB3 sing N N 244 PRO CG CD sing N N 245 PRO CG HG2 sing N N 246 PRO CG HG3 sing N N 247 PRO CD HD2 sing N N 248 PRO CD HD3 sing N N 249 PRO OXT HXT sing N N 250 SER N CA sing N N 251 SER N H sing N N 252 SER N H2 sing N N 253 SER CA C sing N N 254 SER CA CB sing N N 255 SER CA HA sing N N 256 SER C O doub N N 257 SER C OXT sing N N 258 SER CB OG sing N N 259 SER CB HB2 sing N N 260 SER CB HB3 sing N N 261 SER OG HG sing N N 262 SER OXT HXT sing N N 263 THR N CA sing N N 264 THR N H sing N N 265 THR N H2 sing N N 266 THR CA C sing N N 267 THR CA CB sing N N 268 THR CA HA sing N N 269 THR C O doub N N 270 THR C OXT sing N N 271 THR CB OG1 sing N N 272 THR CB CG2 sing N N 273 THR CB HB sing N N 274 THR OG1 HG1 sing N N 275 THR CG2 HG21 sing N N 276 THR CG2 HG22 sing N N 277 THR CG2 HG23 sing N N 278 THR OXT HXT sing N N 279 TRP N CA sing N N 280 TRP N H sing N N 281 TRP N H2 sing N N 282 TRP CA C sing N N 283 TRP CA CB sing N N 284 TRP CA HA sing N N 285 TRP C O doub N N 286 TRP C OXT sing N N 287 TRP CB CG sing N N 288 TRP CB HB2 sing N N 289 TRP CB HB3 sing N N 290 TRP CG CD1 doub Y N 291 TRP CG CD2 sing Y N 292 TRP CD1 NE1 sing Y N 293 TRP CD1 HD1 sing N N 294 TRP CD2 CE2 doub Y N 295 TRP CD2 CE3 sing Y N 296 TRP NE1 CE2 sing Y N 297 TRP NE1 HE1 sing N N 298 TRP CE2 CZ2 sing Y N 299 TRP CE3 CZ3 doub Y N 300 TRP CE3 HE3 sing N N 301 TRP CZ2 CH2 doub Y N 302 TRP CZ2 HZ2 sing N N 303 TRP CZ3 CH2 sing Y N 304 TRP CZ3 HZ3 sing N N 305 TRP CH2 HH2 sing N N 306 TRP OXT HXT sing N N 307 TYR N CA sing N N 308 TYR N H sing N N 309 TYR N H2 sing N N 310 TYR CA C sing N N 311 TYR CA CB sing N N 312 TYR CA HA sing N N 313 TYR C O doub N N 314 TYR C OXT sing N N 315 TYR CB CG sing N N 316 TYR CB HB2 sing N N 317 TYR CB HB3 sing N N 318 TYR CG CD1 doub Y N 319 TYR CG CD2 sing Y N 320 TYR CD1 CE1 sing Y N 321 TYR CD1 HD1 sing N N 322 TYR CD2 CE2 doub Y N 323 TYR CD2 HD2 sing N N 324 TYR CE1 CZ doub Y N 325 TYR CE1 HE1 sing N N 326 TYR CE2 CZ sing Y N 327 TYR CE2 HE2 sing N N 328 TYR CZ OH sing N N 329 TYR OH HH sing N N 330 TYR OXT HXT sing N N 331 VAL N CA sing N N 332 VAL N H sing N N 333 VAL N H2 sing N N 334 VAL CA C sing N N 335 VAL CA CB sing N N 336 VAL CA HA sing N N 337 VAL C O doub N N 338 VAL C OXT sing N N 339 VAL CB CG1 sing N N 340 VAL CB CG2 sing N N 341 VAL CB HB sing N N 342 VAL CG1 HG11 sing N N 343 VAL CG1 HG12 sing N N 344 VAL CG1 HG13 sing N N 345 VAL CG2 HG21 sing N N 346 VAL CG2 HG22 sing N N 347 VAL CG2 HG23 sing N N 348 VAL OXT HXT sing N N 349 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2QDN _pdbx_initial_refinement_model.details ? #