HEADER TRANSPORT PROTEIN 07-NOV-07 3B9W TITLE THE 1.3 A RESOLUTION STRUCTURE OF NITROSOMONAS EUROPAEA RH50 AND TITLE 2 MECHANISTIC IMPLICATIONS FOR NH3 TRANSPORT BY RHESUS FAMILY PROTEINS CAVEAT 3B9W BOG A 408 HAS WRONG CHIRALITY AT ATOM C2 BOG A 408 HAS WRONG CAVEAT 2 3B9W CHIRALITY AT ATOM C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMMONIUM TRANSPORTER FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 25-425; COMPND 5 SYNONYM: RHESUS PROTEIN, RH-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915; SOURCE 4 GENE: RH50; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GT1000; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAD7 KEYWDS MEMBRANE PROTEIN, AMMONIA TRANSPORT, RHESUS PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.LUPO,F.K.WINKLER REVDAT 7 01-NOV-23 3B9W 1 HETSYN REVDAT 6 29-JUL-20 3B9W 1 CAVEAT COMPND REMARK SEQADV REVDAT 6 2 1 HETNAM SITE REVDAT 5 25-OCT-17 3B9W 1 REMARK REVDAT 4 13-JUL-11 3B9W 1 VERSN REVDAT 3 24-FEB-09 3B9W 1 VERSN REVDAT 2 04-DEC-07 3B9W 1 JRNL REVDAT 1 20-NOV-07 3B9W 0 JRNL AUTH D.LUPO,X.D.LI,A.DURAND,T.TOMIZAKI,B.CHERIF-ZAHAR,G.MATASSI, JRNL AUTH 2 M.MERRICK,F.K.WINKLER JRNL TITL THE 1.3-A RESOLUTION STRUCTURE OF NITROSOMONAS EUROPAEA RH50 JRNL TITL 2 AND MECHANISTIC IMPLICATIONS FOR NH3 TRANSPORT BY RHESUS JRNL TITL 3 FAMILY PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 19303 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 18032606 JRNL DOI 10.1073/PNAS.0706563104 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 125231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6637 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9283 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 503 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.364 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2779 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3793 ; 1.005 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 4.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;32.435 ;23.617 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;11.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.411 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2036 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1514 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2019 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.134 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 2.848 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2865 ; 3.493 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 4.712 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 924 ; 6.147 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2919 ; 2.625 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 372 ;10.532 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2718 ; 6.045 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07209 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 18.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRTY 2NUU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM TRIS/HCL PH=8.5, 0.2M NACL, 24% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.03050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.88512 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.94267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.03050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.88512 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.94267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.03050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.88512 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.94267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.77025 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.88533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.77025 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.88533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.77025 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.88533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14590 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 719 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 720 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 HIS A 370 REMARK 465 LYS A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 ARG A 374 REMARK 465 LEU A 375 REMARK 465 VAL A 376 REMARK 465 LEU A 377 REMARK 465 GLU A 378 REMARK 465 ALA A 379 REMARK 465 LYS A 380 REMARK 465 THR A 381 REMARK 465 GLU A 382 REMARK 465 ILE A 383 REMARK 465 GLN A 384 REMARK 465 GLY A 385 REMARK 465 LEU A 386 REMARK 465 LYS A 387 REMARK 465 ASN A 388 REMARK 465 ARG A 389 REMARK 465 ILE A 390 REMARK 465 ASP A 391 REMARK 465 ALA A 392 REMARK 465 ALA A 393 REMARK 465 VAL A 394 REMARK 465 LEU A 395 REMARK 465 SER A 396 REMARK 465 ALA A 397 REMARK 465 LYS A 398 REMARK 465 SER A 399 REMARK 465 GLU A 400 REMARK 465 GLY A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 125 -61.40 -94.76 REMARK 500 ASP A 138 65.18 -160.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XQF RELATED DB: PDB REMARK 900 WILD-TYPE AMMONIUM TRANSPORTER AMTB FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1U7G RELATED DB: PDB REMARK 900 TRIPLE MUTANT OF THE AMMONIUM TRANSPORTER AMTB FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 2B2F RELATED DB: PDB REMARK 900 WILD-TYPE AMMONIUM TRANSPORTER AMT1 FROM ARCHAEOGLOBUS FULGIDUS DBREF 3B9W A 1 401 UNP Q82X47 Q82X47_NITEU 25 425 SEQADV 3B9W HIS A 402 UNP Q82X47 EXPRESSION TAG SEQADV 3B9W HIS A 403 UNP Q82X47 EXPRESSION TAG SEQADV 3B9W HIS A 404 UNP Q82X47 EXPRESSION TAG SEQADV 3B9W HIS A 405 UNP Q82X47 EXPRESSION TAG SEQADV 3B9W HIS A 406 UNP Q82X47 EXPRESSION TAG SEQADV 3B9W HIS A 407 UNP Q82X47 EXPRESSION TAG SEQRES 1 A 407 SER ALA VAL ALA PRO ALA GLU ILE ASN GLU ALA ARG LEU SEQRES 2 A 407 VAL ALA GLN TYR ASN TYR SER ILE ASN ILE LEU ALA MET SEQRES 3 A 407 LEU LEU VAL GLY PHE GLY PHE LEU MET VAL PHE VAL ARG SEQRES 4 A 407 ARG TYR GLY PHE SER ALA THR THR GLY THR TYR LEU VAL SEQRES 5 A 407 VAL ALA THR GLY LEU PRO LEU TYR ILE LEU LEU ARG ALA SEQRES 6 A 407 ASN GLY ILE PHE GLY HIS ALA LEU THR PRO HIS SER VAL SEQRES 7 A 407 ASP ALA VAL ILE TYR ALA GLU PHE ALA VAL ALA THR GLY SEQRES 8 A 407 LEU ILE ALA MET GLY ALA VAL LEU GLY ARG LEU ARG VAL SEQRES 9 A 407 PHE GLN TYR ALA LEU LEU ALA LEU PHE ILE VAL PRO VAL SEQRES 10 A 407 TYR LEU LEU ASN GLU TRP LEU VAL LEU ASP ASN ALA SER SEQRES 11 A 407 GLY LEU THR GLU GLY PHE GLN ASP SER ALA GLY SER ILE SEQRES 12 A 407 ALA ILE HIS ALA PHE GLY ALA TYR PHE GLY LEU GLY VAL SEQRES 13 A 407 SER ILE ALA LEU THR THR ALA ALA GLN ARG ALA GLN PRO SEQRES 14 A 407 ILE GLU SER ASP ALA THR SER ASP ARG PHE SER MET LEU SEQRES 15 A 407 GLY SER MET VAL LEU TRP LEU PHE TRP PRO SER PHE ALA SEQRES 16 A 407 THR ALA ILE VAL PRO PHE GLU GLN MET PRO GLN THR ILE SEQRES 17 A 407 VAL ASN THR LEU LEU ALA LEU CYS GLY ALA THR LEU ALA SEQRES 18 A 407 THR TYR PHE LEU SER ALA LEU PHE HIS LYS GLY LYS ALA SEQRES 19 A 407 SER ILE VAL ASP MET ALA ASN ALA ALA LEU ALA GLY GLY SEQRES 20 A 407 VAL ALA ILE GLY SER VAL CYS ASN ILE VAL GLY PRO VAL SEQRES 21 A 407 GLY ALA PHE VAL ILE GLY LEU LEU GLY GLY ALA ILE SER SEQRES 22 A 407 VAL VAL GLY PHE VAL PHE ILE GLN PRO MET LEU GLU SER SEQRES 23 A 407 LYS ALA LYS THR ILE ASP THR CYS GLY VAL HIS ASN LEU SEQRES 24 A 407 HIS GLY LEU PRO GLY LEU LEU GLY GLY PHE SER ALA ILE SEQRES 25 A 407 LEU ILE VAL PRO GLY ILE ALA VAL ALA GLN LEU THR GLY SEQRES 26 A 407 ILE GLY ILE THR LEU ALA LEU ALA LEU ILE GLY GLY VAL SEQRES 27 A 407 ILE ALA GLY ALA LEU ILE LYS LEU THR GLY THR THR LYS SEQRES 28 A 407 GLN ALA TYR GLU ASP SER HIS GLU PHE ILE HIS LEU ALA SEQRES 29 A 407 GLY PRO GLU ASP GLU HIS LYS ALA GLU ARG LEU VAL LEU SEQRES 30 A 407 GLU ALA LYS THR GLU ILE GLN GLY LEU LYS ASN ARG ILE SEQRES 31 A 407 ASP ALA ALA VAL LEU SER ALA LYS SER GLU GLY HIS HIS SEQRES 32 A 407 HIS HIS HIS HIS HET BOG A 408 20 HET GOL A 409 6 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM GOL GLYCEROL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BOG C14 H28 O6 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *372(H2 O) HELIX 1 1 ASN A 9 MET A 35 1 27 HELIX 2 2 VAL A 36 VAL A 38 5 3 HELIX 3 3 TYR A 41 ASN A 66 1 26 HELIX 4 4 SER A 77 LEU A 99 1 23 HELIX 5 5 ARG A 103 LEU A 126 1 24 HELIX 6 6 ILE A 145 THR A 161 1 17 HELIX 7 7 THR A 162 ALA A 167 1 6 HELIX 8 8 ASP A 173 ALA A 197 1 25 HELIX 9 9 PRO A 200 GLU A 202 5 3 HELIX 10 10 GLN A 203 HIS A 230 1 28 HELIX 11 11 SER A 235 ALA A 243 1 9 HELIX 12 12 LEU A 244 GLY A 251 1 8 HELIX 13 13 GLY A 258 PHE A 279 1 22 HELIX 14 14 PHE A 279 ALA A 288 1 10 HELIX 15 15 GLY A 295 HIS A 300 1 6 HELIX 16 16 GLY A 301 VAL A 315 1 15 HELIX 17 17 ILE A 318 LEU A 346 1 29 HELIX 18 18 GLU A 355 GLU A 359 5 5 HELIX 19 19 GLY A 365 GLU A 369 5 5 CRYST1 100.061 100.061 143.828 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009994 0.005770 0.000000 0.00000 SCALE2 0.000000 0.011540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006953 0.00000