HEADER OXIDOREDUCTASE 07-NOV-07 3BA3 TITLE CRYSTAL STRUCTURE OF PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-LIKE PROTEIN TITLE 2 (NP_783940.1) FROM LACTOBACILLUS PLANTARUM AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN LP_0091; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM WCFS1; SOURCE 3 ORGANISM_TAXID: 220668; SOURCE 4 STRAIN: WCFS1, NCIMB 8826; SOURCE 5 ATCC: BAA-793; SOURCE 6 GENE: NP_783940.1, LP_0091; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_783940.1, PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-LIKE PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 3BA3 1 REMARK SEQADV REVDAT 5 24-JUL-19 3BA3 1 REMARK LINK REVDAT 4 25-OCT-17 3BA3 1 REMARK REVDAT 3 13-JUL-11 3BA3 1 VERSN REVDAT 2 24-FEB-09 3BA3 1 VERSN REVDAT 1 20-NOV-07 3BA3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-LIKE JRNL TITL 2 PROTEIN (NP_783940.1) FROM LACTOBACILLUS PLANTARUM AT 1.55 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3263 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4424 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2463 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1565 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3374 ; 1.684 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3880 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;38.986 ;26.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;12.127 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2771 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 526 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1670 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1253 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1235 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 281 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.270 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1662 ; 2.274 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 605 ; 0.595 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2536 ; 2.894 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1006 ; 4.472 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 838 ; 6.065 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 78.6660 103.7680 46.2000 REMARK 3 T TENSOR REMARK 3 T11: -0.0516 T22: -0.0808 REMARK 3 T33: -0.0339 T12: -0.0143 REMARK 3 T13: -0.0569 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.3050 L22: 2.6353 REMARK 3 L33: 1.3752 L12: 1.1745 REMARK 3 L13: 0.0384 L23: -0.2816 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0732 S13: -0.1341 REMARK 3 S21: 0.1642 S22: -0.0775 S23: -0.3712 REMARK 3 S31: 0.0175 S32: -0.0349 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): 56.4950 99.8340 38.1360 REMARK 3 T TENSOR REMARK 3 T11: -0.0528 T22: -0.0638 REMARK 3 T33: -0.0473 T12: 0.0006 REMARK 3 T13: -0.0078 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.8713 L22: 0.7710 REMARK 3 L33: 0.9438 L12: 0.3751 REMARK 3 L13: -0.0818 L23: 0.2805 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: -0.0564 S13: 0.0409 REMARK 3 S21: 0.0521 S22: -0.0419 S23: 0.0672 REMARK 3 S31: -0.0126 S32: -0.0325 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. SULFATE ION FROM THE CRYSTALLIZATION CONDITIONS AND REMARK 3 ETHYLENE GLYCOL FROM THE CRYO CONDITIONS ARE MODELED REMARK 3 IN THE STRUCTURE. REMARK 3 5. UNKNOWN ELECTRON DENSITY NEAR RESIDUE 18 IN SUBUNIT A REMARK 3 AND RESIDUE 14 IN SUBUNIT B IS NOT MODELED. REMARK 4 REMARK 4 3BA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.975 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.91300 REMARK 200 R SYM FOR SHELL (I) : 0.91300 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 2.0M (NH4)2SO4, 0.2M LI2SO4, REMARK 280 0.1M TRIS-HCL PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.68950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.68950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.68950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.68950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.68950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.68950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 68.68950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 68.68950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 68.68950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 68.68950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 68.68950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 68.68950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 68.68950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 68.68950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 68.68950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 68.68950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 68.68950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 68.68950 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 34.34475 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 103.03425 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 103.03425 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 34.34475 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 34.34475 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.34475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 103.03425 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 103.03425 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 34.34475 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 103.03425 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 34.34475 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 103.03425 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 34.34475 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 103.03425 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 103.03425 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 103.03425 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 34.34475 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 103.03425 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 34.34475 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 34.34475 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 34.34475 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 103.03425 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 103.03425 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 34.34475 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 34.34475 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 103.03425 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 103.03425 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 103.03425 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 103.03425 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 34.34475 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 103.03425 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 34.34475 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 103.03425 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 34.34475 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 34.34475 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 34.34475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 153 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 236 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 144 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS B 7 CD CE NZ REMARK 470 GLU B 25 OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASN B 144 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 122 CB GLU B 122 CG -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 126 -81.85 -100.53 REMARK 500 ALA B 21 31.37 -143.59 REMARK 500 THR B 126 -80.14 -108.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378137 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BA3 A 1 144 UNP Q890D6 Q890D6_LACPL 1 144 DBREF 3BA3 B 1 144 UNP Q890D6 Q890D6_LACPL 1 144 SEQADV 3BA3 GLY A 0 UNP Q890D6 EXPRESSION TAG SEQADV 3BA3 GLY B 0 UNP Q890D6 EXPRESSION TAG SEQRES 1 A 145 GLY MSE ASP ILE SER LEU LEU LYS GLN VAL VAL GLN SER SEQRES 2 A 145 THR ASN LYS ILE ALA LEU SER THR ALA VAL ASN ASN GLU SEQRES 3 A 145 ALA ASP VAL LYS ILE VAL ASN PHE VAL TRP TYR GLU ALA SEQRES 4 A 145 GLN PRO ASP THR LEU TYR PHE SER SER VAL LYS THR SER SEQRES 5 A 145 PRO ALA LEU LYS VAL TYR ASP GLN ASN PRO ASP ILE ALA SEQRES 6 A 145 PHE ILE THR ILE PRO ASN ASP GLY THR ALA GLY ASN PRO SEQRES 7 A 145 TYR LEU ARG ALA GLN HIS VAL LYS LEU GLN ARG SER THR SEQRES 8 A 145 LYS THR MSE THR ASP LEU LEU PRO GLN TYR LEU GLU THR SEQRES 9 A 145 VAL PRO ASN TYR GLN GLN VAL TRP ASP ALA ILE GLY SER SEQRES 10 A 145 THR LEU VAL VAL PHE GLU LEU LYS LEU THR ASP LEU PHE SEQRES 11 A 145 VAL ASP ALA GLY VAL GLY GLY GLU LYS GLN THR LEU THR SEQRES 12 A 145 PHE ASN SEQRES 1 B 145 GLY MSE ASP ILE SER LEU LEU LYS GLN VAL VAL GLN SER SEQRES 2 B 145 THR ASN LYS ILE ALA LEU SER THR ALA VAL ASN ASN GLU SEQRES 3 B 145 ALA ASP VAL LYS ILE VAL ASN PHE VAL TRP TYR GLU ALA SEQRES 4 B 145 GLN PRO ASP THR LEU TYR PHE SER SER VAL LYS THR SER SEQRES 5 B 145 PRO ALA LEU LYS VAL TYR ASP GLN ASN PRO ASP ILE ALA SEQRES 6 B 145 PHE ILE THR ILE PRO ASN ASP GLY THR ALA GLY ASN PRO SEQRES 7 B 145 TYR LEU ARG ALA GLN HIS VAL LYS LEU GLN ARG SER THR SEQRES 8 B 145 LYS THR MSE THR ASP LEU LEU PRO GLN TYR LEU GLU THR SEQRES 9 B 145 VAL PRO ASN TYR GLN GLN VAL TRP ASP ALA ILE GLY SER SEQRES 10 B 145 THR LEU VAL VAL PHE GLU LEU LYS LEU THR ASP LEU PHE SEQRES 11 B 145 VAL ASP ALA GLY VAL GLY GLY GLU LYS GLN THR LEU THR SEQRES 12 B 145 PHE ASN MODRES 3BA3 MSE A 1 MET SELENOMETHIONINE MODRES 3BA3 MSE A 93 MET SELENOMETHIONINE MODRES 3BA3 MSE B 1 MET SELENOMETHIONINE MODRES 3BA3 MSE B 93 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 93 8 HET MSE B 1 16 HET MSE B 93 8 HET SO4 A 145 5 HET SO4 A 146 5 HET EDO A 147 4 HET EDO A 148 4 HET EDO A 149 4 HET EDO A 150 4 HET EDO A 151 4 HET EDO A 152 4 HET EDO B 145 4 HET EDO B 146 4 HET EDO B 147 4 HET EDO B 148 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 EDO 10(C2 H6 O2) FORMUL 15 HOH *413(H2 O) HELIX 1 1 ILE A 3 SER A 12 1 10 HELIX 2 2 PRO A 52 ASP A 58 1 7 HELIX 3 3 THR A 92 VAL A 104 1 13 HELIX 4 4 ASN A 106 GLY A 115 1 10 HELIX 5 5 ILE B 3 GLN B 11 1 9 HELIX 6 6 ALA B 21 GLU B 25 5 5 HELIX 7 7 ALA B 53 ASP B 58 1 6 HELIX 8 8 THR B 92 VAL B 104 1 13 HELIX 9 9 ASN B 106 GLY B 115 1 10 SHEET 1 A 7 GLU A 25 ASN A 32 0 SHEET 2 A 7 THR A 13 VAL A 22 -1 N LEU A 18 O LYS A 29 SHEET 3 A 7 ASP A 62 PRO A 69 -1 O ALA A 64 N SER A 19 SHEET 4 A 7 TYR A 78 ARG A 88 -1 O VAL A 84 N ILE A 63 SHEET 5 A 7 LEU A 118 LYS A 124 -1 O LYS A 124 N LYS A 85 SHEET 6 A 7 THR A 42 VAL A 48 -1 N PHE A 45 O PHE A 121 SHEET 7 A 7 VAL A 34 TRP A 35 -1 N VAL A 34 O TYR A 44 SHEET 1 B 6 GLU A 25 ASN A 32 0 SHEET 2 B 6 THR A 13 VAL A 22 -1 N LEU A 18 O LYS A 29 SHEET 3 B 6 ASP A 62 PRO A 69 -1 O ALA A 64 N SER A 19 SHEET 4 B 6 TYR A 78 ARG A 88 -1 O VAL A 84 N ILE A 63 SHEET 5 B 6 ASP A 127 ASP A 131 -1 O PHE A 129 N ARG A 80 SHEET 6 B 6 LYS A 138 THR A 142 -1 O GLN A 139 N VAL A 130 SHEET 1 C 6 ASP B 27 ASN B 32 0 SHEET 2 C 6 THR B 13 THR B 20 -1 N LEU B 18 O LYS B 29 SHEET 3 C 6 ASP B 62 PRO B 69 -1 O ALA B 64 N SER B 19 SHEET 4 C 6 TYR B 78 ARG B 88 -1 O ALA B 81 N PHE B 65 SHEET 5 C 6 LEU B 118 LYS B 124 -1 O GLU B 122 N GLN B 87 SHEET 6 C 6 THR B 42 VAL B 48 -1 N PHE B 45 O PHE B 121 SHEET 1 D 6 ASP B 27 ASN B 32 0 SHEET 2 D 6 THR B 13 THR B 20 -1 N LEU B 18 O LYS B 29 SHEET 3 D 6 ASP B 62 PRO B 69 -1 O ALA B 64 N SER B 19 SHEET 4 D 6 TYR B 78 ARG B 88 -1 O ALA B 81 N PHE B 65 SHEET 5 D 6 ASP B 127 ASP B 131 -1 O PHE B 129 N ARG B 80 SHEET 6 D 6 LYS B 138 THR B 142 -1 O GLN B 139 N VAL B 130 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C THR A 92 N MSE A 93 1555 1555 1.31 LINK C MSE A 93 N ATHR A 94 1555 1555 1.33 LINK C MSE A 93 N BTHR A 94 1555 1555 1.33 LINK C AMSE B 1 N ASP B 2 1555 1555 1.32 LINK C BMSE B 1 N ASP B 2 1555 1555 1.33 LINK C THR B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N THR B 94 1555 1555 1.33 SITE 1 AC1 8 GLY A 133 VAL A 134 GLY A 135 LYS A 138 SITE 2 AC1 8 EDO A 149 LYS B 138 HOH B 180 HOH B 383 SITE 1 AC2 10 ASN A 14 LYS A 15 PRO A 105 HOH A 169 SITE 2 AC2 10 HOH A 191 HOH A 197 HOH A 222 HOH A 274 SITE 3 AC2 10 HOH A 318 HOH B 297 SITE 1 AC3 8 ASP B 112 ALA B 113 ILE B 114 GLY B 115 SITE 2 AC3 8 SER B 116 HOH B 217 HOH B 312 HOH B 327 SITE 1 AC4 7 ASP A 112 ALA A 113 ILE A 114 GLY A 115 SITE 2 AC4 7 SER A 116 HOH A 236 HOH A 283 SITE 1 AC5 4 TYR B 36 LYS B 91 ASP B 95 EDO B 148 SITE 1 AC6 5 LYS B 15 ASN B 32 HOH B 289 HOH B 291 SITE 2 AC6 5 HOH B 315 SITE 1 AC7 5 LYS A 15 ILE A 30 HOH A 169 HOH A 195 SITE 2 AC7 5 ASN B 76 SITE 1 AC8 4 LYS A 29 GLY A 135 GLY A 136 SO4 A 145 SITE 1 AC9 5 TYR A 36 LYS A 91 ASP A 95 HOH A 293 SITE 2 AC9 5 HOH A 300 SITE 1 BC1 6 LEU A 101 GLU A 102 THR A 103 PRO A 105 SITE 2 BC1 6 HOH A 207 HOH A 301 SITE 1 BC2 5 ALA B 38 GLN B 39 TYR B 44 EDO B 146 SITE 2 BC2 5 HOH B 336 SITE 1 BC3 4 HOH A 205 LYS B 29 GLU B 137 GLN B 139 CRYST1 137.379 137.379 137.379 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007279 0.00000 HETATM 1 N MSE A 1 92.645 88.720 50.230 1.00 39.30 N HETATM 2 CA MSE A 1 91.405 88.600 49.389 1.00 37.29 C HETATM 3 C MSE A 1 91.696 88.940 47.922 1.00 34.69 C HETATM 4 O MSE A 1 92.331 89.947 47.625 1.00 36.44 O HETATM 5 CB MSE A 1 90.314 89.524 49.937 1.00 38.75 C HETATM 6 CG MSE A 1 88.958 89.452 49.223 1.00 39.85 C HETATM 7 SE MSE A 1 87.829 90.985 49.714 0.75 39.56 SE HETATM 8 CE MSE A 1 87.200 90.258 51.431 1.00 39.93 C