HEADER LIGASE 07-NOV-07 3BAB TITLE STRUCTURAL BASIS FOR THE INHIBITION OF BACTERIAL NAD+ DEPENDENT DNA TITLE 2 LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADENYLATION DOMAIN; COMPND 5 EC: 6.5.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 GENE: LIGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENYLATION DOMAIN, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, LIGASE, KEYWDS 2 NAD EXPDTA X-RAY DIFFRACTION AUTHOR C.PINKO REVDAT 4 21-FEB-24 3BAB 1 REMARK REVDAT 3 13-JUL-11 3BAB 1 VERSN REVDAT 2 24-FEB-09 3BAB 1 VERSN REVDAT 1 11-NOV-08 3BAB 0 JRNL AUTH C.PINKO,A.BORCHARDT,V.NIKULIN,Y.SU JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF BACTERIAL NAD+ JRNL TITL 2 DEPENDENT DNA LIGASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 316487.781 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 14477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1436 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2026 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 7.50000 REMARK 3 B33 (A**2) : -7.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.150 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 28.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : SO4.PARAM REMARK 3 PARAMETER FILE 4 : NMN.PARAM REMARK 3 PARAMETER FILE 5 : 3346.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 24.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.36300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.28500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.36300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 ALA A 321 REMARK 465 GLU A 322 REMARK 465 THR A 323 REMARK 465 VAL A 324 REMARK 465 LEU A 325 REMARK 465 GLU A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 34 77.49 -151.15 REMARK 500 TYR A 87 170.11 -59.17 REMARK 500 ILE A 150 42.73 -107.59 REMARK 500 PRO A 167 45.84 -70.78 REMARK 500 LYS A 236 -84.96 -79.20 REMARK 500 ALA A 237 118.99 27.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3BD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BA8 RELATED DB: PDB REMARK 900 RELATED ID: 3BA9 RELATED DB: PDB REMARK 900 RELATED ID: 3BAA RELATED DB: PDB DBREF 3BAB A 1 324 UNP Q837V6 Q837V6_ENTFA 1 324 SEQADV 3BAB LEU A 325 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB GLU A 326 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB HIS A 327 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB HIS A 328 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB HIS A 329 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB HIS A 330 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB HIS A 331 UNP Q837V6 EXPRESSION TAG SEQADV 3BAB HIS A 332 UNP Q837V6 EXPRESSION TAG SEQRES 1 A 332 MET GLU GLN GLN PRO LEU THR LEU THR ALA ALA THR THR SEQRES 2 A 332 ARG ALA GLN GLU LEU ARG LYS GLN LEU ASN GLN TYR SER SEQRES 3 A 332 HIS GLU TYR TYR VAL LYS ASP GLN PRO SER VAL GLU ASP SEQRES 4 A 332 TYR VAL TYR ASP ARG LEU TYR LYS GLU LEU VAL ASP ILE SEQRES 5 A 332 GLU THR GLU PHE PRO ASP LEU ILE THR PRO ASP SER PRO SEQRES 6 A 332 THR GLN ARG VAL GLY GLY LYS VAL LEU SER GLY PHE GLU SEQRES 7 A 332 LYS ALA PRO HIS ASP ILE PRO MET TYR SER LEU ASN ASP SEQRES 8 A 332 GLY PHE SER LYS GLU ASP ILE PHE ALA PHE ASP GLU ARG SEQRES 9 A 332 VAL ARG LYS ALA ILE GLY LYS PRO VAL ALA TYR CYS CYS SEQRES 10 A 332 GLU LEU LYS ILE ASP GLY LEU ALA ILE SER LEU ARG TYR SEQRES 11 A 332 GLU ASN GLY VAL PHE VAL ARG GLY ALA THR ARG GLY ASP SEQRES 12 A 332 GLY THR VAL GLY GLU ASN ILE THR GLU ASN LEU ARG THR SEQRES 13 A 332 VAL ARG SER VAL PRO MET ARG LEU THR GLU PRO ILE SER SEQRES 14 A 332 VAL GLU VAL ARG GLY GLU CYS TYR MET PRO LYS GLN SER SEQRES 15 A 332 PHE VAL ALA LEU ASN GLU GLU ARG GLU GLU ASN GLY GLN SEQRES 16 A 332 ASP ILE PHE ALA ASN PRO ARG ASN ALA ALA ALA GLY SER SEQRES 17 A 332 LEU ARG GLN LEU ASP THR LYS ILE VAL ALA LYS ARG ASN SEQRES 18 A 332 LEU ASN THR PHE LEU TYR THR VAL ALA ASP PHE GLY PRO SEQRES 19 A 332 MET LYS ALA LYS THR GLN PHE GLU ALA LEU GLU GLU LEU SEQRES 20 A 332 SER ALA ILE GLY PHE ARG THR ASN PRO GLU ARG GLN LEU SEQRES 21 A 332 CYS GLN SER ILE ASP GLU VAL TRP ALA TYR ILE GLU GLU SEQRES 22 A 332 TYR HIS GLU LYS ARG SER THR LEU PRO TYR GLU ILE ASP SEQRES 23 A 332 GLY ILE VAL ILE LYS VAL ASN GLU PHE ALA LEU GLN ASP SEQRES 24 A 332 GLU LEU GLY PHE THR VAL LYS ALA PRO ARG TRP ALA ILE SEQRES 25 A 332 ALA TYR LYS PHE PRO PRO GLU GLU ALA GLU THR VAL LEU SEQRES 26 A 332 GLU HIS HIS HIS HIS HIS HIS HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET NMN A 401 22 HET 3BD A 501 30 HET GOL A 603 6 HETNAM SO4 SULFATE ION HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM 3BD 7-AMINO-2-TERT-BUTYL-4-(4-PYRIMIDIN-2-YLPIPERAZIN-1- HETNAM 2 3BD YL)PYRIDO[2,3-D]PYRIMIDINE-6-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 NMN C11 H16 N2 O8 P 1+ FORMUL 7 3BD C20 H25 N9 O FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *90(H2 O) HELIX 1 1 THR A 7 VAL A 31 1 25 HELIX 2 2 GLU A 38 PHE A 56 1 19 HELIX 3 3 PRO A 57 ILE A 60 5 4 HELIX 4 4 SER A 64 GLY A 70 5 7 HELIX 5 5 SER A 94 GLY A 110 1 17 HELIX 6 6 ILE A 150 ARG A 155 1 6 HELIX 7 7 PRO A 179 ASN A 193 1 15 HELIX 8 8 ASN A 200 LEU A 209 1 10 HELIX 9 9 ASP A 213 ALA A 218 1 6 HELIX 10 10 THR A 239 ILE A 250 1 12 HELIX 11 11 SER A 263 ARG A 278 1 16 HELIX 12 12 SER A 279 LEU A 281 5 3 HELIX 13 13 GLU A 294 GLY A 302 1 9 SHEET 1 A 2 LYS A 79 PRO A 81 0 SHEET 2 A 2 VAL A 146 GLU A 148 -1 O GLY A 147 N ALA A 80 SHEET 1 B 5 ASP A 91 GLY A 92 0 SHEET 2 B 5 ALA A 311 LYS A 315 1 O LYS A 315 N GLY A 92 SHEET 3 B 5 ILE A 285 VAL A 292 -1 N ILE A 288 O TYR A 314 SHEET 4 B 5 TYR A 115 ILE A 121 -1 N GLU A 118 O VAL A 289 SHEET 5 B 5 GLN A 259 CYS A 261 -1 O GLN A 259 N CYS A 117 SHEET 1 C 4 VAL A 134 THR A 140 0 SHEET 2 C 4 LEU A 124 GLU A 131 -1 N ARG A 129 O ARG A 137 SHEET 3 C 4 VAL A 170 TYR A 177 -1 O VAL A 172 N LEU A 128 SHEET 4 C 4 ASN A 223 ASP A 231 -1 O PHE A 225 N GLU A 175 SITE 1 AC1 3 PRO A 81 ARG A 129 ARG A 137 SITE 1 AC2 4 ARG A 190 GLN A 195 GLN A 211 ARG A 220 SITE 1 AC3 3 GLN A 24 HIS A 27 LYS A 32 SITE 1 AC4 9 PRO A 81 HIS A 82 ASP A 83 SER A 127 SITE 2 AC4 9 ARG A 129 ARG A 137 GLU A 171 ARG A 173 SITE 3 AC4 9 HOH A 613 SITE 1 AC5 12 TYR A 25 TYR A 29 TYR A 30 VAL A 37 SITE 2 AC5 12 ASP A 39 TYR A 42 ASP A 43 TYR A 46 SITE 3 AC5 12 ARG A 158 HOH A 606 HOH A 669 HOH A 690 SITE 1 AC6 12 TYR A 87 GLU A 118 LEU A 119 LYS A 120 SITE 2 AC6 12 ILE A 121 ALA A 125 GLU A 175 TYR A 227 SITE 3 AC6 12 LYS A 291 TRP A 310 HOH A 630 HOH A 649 SITE 1 AC7 6 ASN A 23 ARG A 68 PRO A 161 MET A 162 SITE 2 AC7 6 ARG A 163 HOH A 607 CRYST1 90.570 86.726 56.856 90.00 100.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011041 0.000000 0.002143 0.00000 SCALE2 0.000000 0.011531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017917 0.00000