HEADER HYDROLASE 09-NOV-07 3BBJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE II (TFU_2367) FROM TITLE 2 THERMOBIFIDA FUSCA YX AT 2.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOESTERASE II; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: YP_290423.1, TFU_2367; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE THIOESTERASE II, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BBJ 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BBJ 1 REMARK LINK REVDAT 5 25-OCT-17 3BBJ 1 REMARK REVDAT 4 13-JUL-11 3BBJ 1 VERSN REVDAT 3 28-JUL-10 3BBJ 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BBJ 1 VERSN REVDAT 1 20-NOV-07 3BBJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE THIOESTERASE II (YP_290423.1) JRNL TITL 2 FROM THERMOBIFIDA FUSCA YX AT 2.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 72.7 REMARK 3 NUMBER OF REFLECTIONS : 22593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 536 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 24.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.27000 REMARK 3 B22 (A**2) : -6.80000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.440 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.258 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4220 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2803 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5788 ; 1.408 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6795 ; 0.892 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 4.606 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;31.766 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;12.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;15.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4753 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 874 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 777 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2884 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1959 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2269 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 169 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2763 ; 1.508 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1062 ; 0.241 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4332 ; 2.349 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 3.983 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1453 ; 5.426 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 118 2 REMARK 3 1 B 5 B 118 2 REMARK 3 2 A 125 A 133 2 REMARK 3 2 B 125 B 133 2 REMARK 3 3 A 145 A 164 2 REMARK 3 3 B 145 B 164 2 REMARK 3 4 A 171 A 208 2 REMARK 3 4 B 171 B 208 2 REMARK 3 5 A 215 A 267 2 REMARK 3 5 B 215 B 267 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1369 ; 0.100 ; 0.100 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1616 ; 0.370 ; 0.750 REMARK 3 TIGHT THERMAL 1 A (A**2): 1369 ; 0.110 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1616 ; 0.730 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 271 REMARK 3 RESIDUE RANGE : B 0 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): 73.4540 19.2302 40.1787 REMARK 3 T TENSOR REMARK 3 T11: -0.0689 T22: -0.0117 REMARK 3 T33: -0.0424 T12: 0.0130 REMARK 3 T13: 0.0221 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.2215 L22: 1.1617 REMARK 3 L33: 0.3795 L12: 0.0484 REMARK 3 L13: 0.0348 L23: -0.0406 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0498 S13: 0.0173 REMARK 3 S21: 0.0411 S22: 0.0059 S23: -0.0026 REMARK 3 S31: -0.0342 S32: -0.0116 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION REMARK 3 4. EDO, CL AND SO4 MOLECULES FROM THE CRYSTALLIZATION/CRYO REMARK 3 SOLUTION REMARK 3 ARE MODELED. REMARK 3 5. THE NOMINAL RESOLUTION IS 2.45 A WITH 3406 OBSERVED REFLECTIONS REMARK 3 BETWEEN 2.45-2.16 (35.7% COMPLETE FOR THIS SHELL) INCLUDED REMARK 3 IN THE REFINEMENT. REMARK 4 REMARK 4 3BBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9796, 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.393 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 26.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 22.2% PEG 3350, 0.171M REMARK 280 SODIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.90900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.82700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.90900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.82700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 ARG B 137 REMARK 465 GLN B 138 REMARK 465 SER B 139 REMARK 465 HIS B 140 REMARK 465 LEU B 141 REMARK 465 PRO B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 4 CG SE CE REMARK 470 ARG A 20 NE CZ NH1 NH2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 ARG A 137 CZ NH1 NH2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 THR A 167 OG1 CG2 REMARK 470 VAL A 168 CG1 CG2 REMARK 470 ARG B 20 NE CZ NH1 NH2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 ARG B 164 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 168 79.56 -103.21 REMARK 500 ASP A 210 51.58 -92.88 REMARK 500 ILE B 31 77.00 -113.01 REMARK 500 THR B 169 -74.98 -104.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 276 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 371241 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BBJ A 1 271 UNP Q47MC2 Q47MC2_THEFY 1 271 DBREF 3BBJ B 1 271 UNP Q47MC2 Q47MC2_THEFY 1 271 SEQADV 3BBJ GLY A 0 UNP Q47MC2 EXPRESSION TAG SEQADV 3BBJ GLY B 0 UNP Q47MC2 EXPRESSION TAG SEQRES 1 A 272 GLY MSE VAL PRO MSE THR ARG PHE ASP SER ALA THR GLU SEQRES 2 A 272 VAL VAL ARG VAL GLY GLU ASN ARG TYR ALA VAL GLU LEU SEQRES 3 A 272 ASP PRO GLY TYR LEU ILE GLY THR ALA MSE ASN GLY GLY SEQRES 4 A 272 TYR LEU MSE THR VAL LEU GLN ARG SER ALA LEU ALA GLU SEQRES 5 A 272 SER ASP HIS LEU HIS ALA VAL SER SER SER TYR HIS PHE SEQRES 6 A 272 HIS ARG PRO ALA SER SER GLY PRO ALA GLU ILE GLU THR SEQRES 7 A 272 ARG VAL LEU LYS ARG GLY ARG THR VAL THR THR VAL GLN SEQRES 8 A 272 THR THR LEU PHE GLN GLU GLY ARG THR ILE LEU THR GLY SEQRES 9 A 272 THR LEU ALA THR ALA THR LEU ASP PRO HIS ALA GLU PRO SEQRES 10 A 272 ARG TYR ALA ALA PRO GLN PRO ALA ILE PRO PRO GLN HIS SEQRES 11 A 272 GLN CYS ARG ARG VAL ASP PRO ARG GLN SER HIS LEU PRO SEQRES 12 A 272 ASP ASP GLY PHE LEU ALA ARG VAL ASP VAL ASP PHE SER SEQRES 13 A 272 PRO ASP SER TYR ALA ALA LEU ALA ARG GLU ARG THR VAL SEQRES 14 A 272 THR THR PRO GLU LEU CYS GLY TYR VAL ASP LEU SER ALA SEQRES 15 A 272 ARG ASP GLY GLY SER ALA LYS ASP PRO LEU ALA PHE LEU SEQRES 16 A 272 PRO LEU ALA VAL ASP ALA LEU PRO PRO ILE VAL SER LEU SEQRES 17 A 272 LEU VAL ASP TRP SER TRP ALA PRO THR VAL GLU LEU THR SEQRES 18 A 272 TRP HIS LEU ARG ALA ILE PRO GLU PRO GLY PRO LEU ALA SEQRES 19 A 272 PHE ARG SER THR CYS ALA LEU VAL SER ASP GLY TRP PHE SEQRES 20 A 272 ASP GLU ASN VAL ASP LEU TRP ASP ALA ARG GLY ARG LEU SEQRES 21 A 272 VAL ALA GLN SER ARG GLN LEU ALA ARG VAL GLY ARG SEQRES 1 B 272 GLY MSE VAL PRO MSE THR ARG PHE ASP SER ALA THR GLU SEQRES 2 B 272 VAL VAL ARG VAL GLY GLU ASN ARG TYR ALA VAL GLU LEU SEQRES 3 B 272 ASP PRO GLY TYR LEU ILE GLY THR ALA MSE ASN GLY GLY SEQRES 4 B 272 TYR LEU MSE THR VAL LEU GLN ARG SER ALA LEU ALA GLU SEQRES 5 B 272 SER ASP HIS LEU HIS ALA VAL SER SER SER TYR HIS PHE SEQRES 6 B 272 HIS ARG PRO ALA SER SER GLY PRO ALA GLU ILE GLU THR SEQRES 7 B 272 ARG VAL LEU LYS ARG GLY ARG THR VAL THR THR VAL GLN SEQRES 8 B 272 THR THR LEU PHE GLN GLU GLY ARG THR ILE LEU THR GLY SEQRES 9 B 272 THR LEU ALA THR ALA THR LEU ASP PRO HIS ALA GLU PRO SEQRES 10 B 272 ARG TYR ALA ALA PRO GLN PRO ALA ILE PRO PRO GLN HIS SEQRES 11 B 272 GLN CYS ARG ARG VAL ASP PRO ARG GLN SER HIS LEU PRO SEQRES 12 B 272 ASP ASP GLY PHE LEU ALA ARG VAL ASP VAL ASP PHE SER SEQRES 13 B 272 PRO ASP SER TYR ALA ALA LEU ALA ARG GLU ARG THR VAL SEQRES 14 B 272 THR THR PRO GLU LEU CYS GLY TYR VAL ASP LEU SER ALA SEQRES 15 B 272 ARG ASP GLY GLY SER ALA LYS ASP PRO LEU ALA PHE LEU SEQRES 16 B 272 PRO LEU ALA VAL ASP ALA LEU PRO PRO ILE VAL SER LEU SEQRES 17 B 272 LEU VAL ASP TRP SER TRP ALA PRO THR VAL GLU LEU THR SEQRES 18 B 272 TRP HIS LEU ARG ALA ILE PRO GLU PRO GLY PRO LEU ALA SEQRES 19 B 272 PHE ARG SER THR CYS ALA LEU VAL SER ASP GLY TRP PHE SEQRES 20 B 272 ASP GLU ASN VAL ASP LEU TRP ASP ALA ARG GLY ARG LEU SEQRES 21 B 272 VAL ALA GLN SER ARG GLN LEU ALA ARG VAL GLY ARG MODRES 3BBJ MSE A 4 MET SELENOMETHIONINE MODRES 3BBJ MSE A 35 MET SELENOMETHIONINE MODRES 3BBJ MSE A 41 MET SELENOMETHIONINE MODRES 3BBJ MSE B 1 MET SELENOMETHIONINE MODRES 3BBJ MSE B 4 MET SELENOMETHIONINE MODRES 3BBJ MSE B 35 MET SELENOMETHIONINE MODRES 3BBJ MSE B 41 MET SELENOMETHIONINE HET MSE A 4 5 HET MSE A 35 8 HET MSE A 41 8 HET MSE B 1 8 HET MSE B 4 8 HET MSE B 35 8 HET MSE B 41 8 HET SO4 A 272 5 HET CL A 273 1 HET CL A 274 1 HET CL A 275 1 HET EDO A 276 4 HET SO4 B 272 5 HET SO4 B 273 5 HET CL B 274 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 CL 4(CL 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 11 HOH *164(H2 O) HELIX 1 1 THR A 5 THR A 11 1 7 HELIX 2 2 ASP A 26 LEU A 30 5 5 HELIX 3 3 ASN A 36 GLU A 51 1 16 HELIX 4 4 PRO A 127 CYS A 131 5 5 HELIX 5 5 LEU A 141 ALA A 148 5 8 HELIX 6 6 SER A 155 ALA A 163 1 9 HELIX 7 7 ASP A 189 VAL A 198 1 10 HELIX 8 8 PRO A 203 LEU A 208 5 6 HELIX 9 9 THR B 5 THR B 11 1 7 HELIX 10 10 ASP B 26 GLY B 28 5 3 HELIX 11 11 ASN B 36 GLU B 51 1 16 HELIX 12 12 PRO B 127 CYS B 131 5 5 HELIX 13 13 GLY B 145 ALA B 148 5 4 HELIX 14 14 SER B 155 ALA B 163 1 9 HELIX 15 15 ASP B 189 VAL B 198 1 10 HELIX 16 16 PRO B 203 LEU B 208 5 6 SHEET 1 A13 VAL A 14 GLY A 17 0 SHEET 2 A13 ARG A 20 LEU A 25 -1 O ALA A 22 N VAL A 14 SHEET 3 A13 GLY A 71 LYS A 81 -1 O GLY A 71 N LEU A 25 SHEET 4 A13 THR A 87 GLN A 95 -1 O GLN A 90 N ARG A 78 SHEET 5 A13 ARG A 98 ALA A 108 -1 O ILE A 100 N LEU A 93 SHEET 6 A13 HIS A 56 PHE A 64 -1 N SER A 59 O ALA A 106 SHEET 7 A13 THR A 216 LEU A 223 -1 O LEU A 219 N TYR A 62 SHEET 8 A13 LEU A 259 ARG A 268 -1 O GLN A 262 N HIS A 222 SHEET 9 A13 TRP A 245 TRP A 253 -1 N LEU A 252 O VAL A 260 SHEET 10 A13 LEU A 232 THR A 237 -1 N THR A 237 O ASN A 249 SHEET 11 A13 GLU A 172 LEU A 179 -1 N VAL A 177 O LEU A 232 SHEET 12 A13 VAL A 150 PHE A 154 -1 N ASP A 153 O TYR A 176 SHEET 13 A13 ARG A 132 ARG A 133 -1 N ARG A 132 O PHE A 154 SHEET 1 B11 VAL A 14 GLY A 17 0 SHEET 2 B11 ARG A 20 LEU A 25 -1 O ALA A 22 N VAL A 14 SHEET 3 B11 GLY A 71 LYS A 81 -1 O GLY A 71 N LEU A 25 SHEET 4 B11 THR A 87 GLN A 95 -1 O GLN A 90 N ARG A 78 SHEET 5 B11 ARG A 98 ALA A 108 -1 O ILE A 100 N LEU A 93 SHEET 6 B11 HIS A 56 PHE A 64 -1 N SER A 59 O ALA A 106 SHEET 7 B11 THR A 216 LEU A 223 -1 O LEU A 219 N TYR A 62 SHEET 8 B11 LEU A 259 ARG A 268 -1 O GLN A 262 N HIS A 222 SHEET 9 B11 TRP A 245 TRP A 253 -1 N LEU A 252 O VAL A 260 SHEET 10 B11 LEU A 240 SER A 242 -1 N SER A 242 O TRP A 245 SHEET 11 B11 TYR B 118 ALA B 119 -1 O TYR B 118 N VAL A 241 SHEET 1 C11 TYR A 118 ALA A 119 0 SHEET 2 C11 LEU B 240 SER B 242 -1 O VAL B 241 N TYR A 118 SHEET 3 C11 TRP B 245 TRP B 253 -1 O TRP B 245 N SER B 242 SHEET 4 C11 LEU B 259 ARG B 268 -1 O VAL B 260 N LEU B 252 SHEET 5 C11 THR B 216 LEU B 223 -1 N HIS B 222 O GLN B 262 SHEET 6 C11 HIS B 56 PHE B 64 -1 N TYR B 62 O LEU B 219 SHEET 7 C11 ARG B 98 ALA B 108 -1 O ALA B 106 N SER B 59 SHEET 8 C11 THR B 87 GLN B 95 -1 N LEU B 93 O ILE B 100 SHEET 9 C11 GLY B 71 LYS B 81 -1 N GLU B 74 O PHE B 94 SHEET 10 C11 ARG B 20 LEU B 25 -1 N TYR B 21 O ILE B 75 SHEET 11 C11 VAL B 14 GLY B 17 -1 N VAL B 14 O ALA B 22 SHEET 1 D 6 TYR A 118 ALA A 119 0 SHEET 2 D 6 LEU B 240 SER B 242 -1 O VAL B 241 N TYR A 118 SHEET 3 D 6 TRP B 245 TRP B 253 -1 O TRP B 245 N SER B 242 SHEET 4 D 6 LEU B 232 THR B 237 -1 N ALA B 233 O TRP B 253 SHEET 5 D 6 GLU B 172 LEU B 179 -1 N VAL B 177 O LEU B 232 SHEET 6 D 6 VAL B 150 PHE B 154 -1 N ASP B 151 O ASP B 178 SHEET 1 E 2 LEU B 30 ILE B 31 0 SHEET 2 E 2 ALA B 34 MSE B 35 -1 O ALA B 34 N ILE B 31 LINK C MSE A 4 N THR A 5 1555 1555 1.34 LINK C ALA A 34 N MSE A 35 1555 1555 1.32 LINK C MSE A 35 N ASN A 36 1555 1555 1.32 LINK C LEU A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N THR A 42 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N VAL B 2 1555 1555 1.32 LINK C PRO B 3 N MSE B 4 1555 1555 1.33 LINK C MSE B 4 N THR B 5 1555 1555 1.33 LINK C ALA B 34 N MSE B 35 1555 1555 1.33 LINK C MSE B 35 N ASN B 36 1555 1555 1.33 LINK C LEU B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N THR B 42 1555 1555 1.34 SITE 1 AC1 6 ARG A 271 GLY B 83 ARG B 84 THR B 85 SITE 2 AC1 6 VAL B 86 HOH B 365 SITE 1 AC2 2 ARG A 66 ARG A 98 SITE 1 AC3 2 ARG B 66 ARG B 98 SITE 1 AC4 2 ARG A 82 ARG B 66 SITE 1 AC5 1 ARG B 82 SITE 1 AC6 2 ILE A 31 THR A 33 SITE 1 AC7 3 LYS A 81 ARG A 84 EDO A 276 SITE 1 AC8 4 ARG A 84 THR A 85 VAL A 86 CL A 275 CRYST1 99.818 103.654 54.734 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018270 0.00000 HETATM 1 N MSE A 4 70.477 44.532 61.761 1.00 64.91 N HETATM 2 CA MSE A 4 70.044 43.852 60.511 1.00 63.80 C HETATM 3 C MSE A 4 70.931 44.256 59.313 1.00 61.65 C HETATM 4 O MSE A 4 71.437 45.371 59.268 1.00 60.76 O HETATM 5 CB MSE A 4 68.574 44.201 60.222 1.00 63.04 C