HEADER RIBOSOME 11-NOV-07 3BBU TITLE THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE TITLE 2 50S.NC-TRNA.HSP15 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 15; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSP15; COMPND 5 OTHER_DETAILS: PART OF THE 50S RIBOSOMAL PARTICLE IN ASSEMBLY WITH COMPND 6 TRNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS ALPHA-L RNA BINDING, HEAT SHOCK, RESCUE STALLED RIBOSOME, RIBOSOME EXPDTA ELECTRON MICROSCOPY AUTHOR L.JIANG,J.P.ABRAHAMS REVDAT 6 21-FEB-24 3BBU 1 REMARK REVDAT 5 18-JUL-18 3BBU 1 REMARK REVDAT 4 02-JUN-10 3BBU 1 REMARK REVDAT 3 17-MAR-09 3BBU 1 JRNL REVDAT 2 24-FEB-09 3BBU 1 VERSN REVDAT 1 21-OCT-08 3BBU 0 JRNL AUTH L.JIANG,C.SCHAFFITZEL,R.BINGEL-ERLENMEYER,N.BAN,P.KORBER, JRNL AUTH 2 R.I.KONING,D.C.DE GEUS,J.R.PLAISIER,J.P.ABRAHAMS JRNL TITL RECYCLING OF ABORTED RIBOSOMAL 50S SUBUNIT-NASCENT JRNL TITL 2 CHAIN-TRNA COMPLEXES BY THE HEAT SHOCK PROTEIN HSP15. JRNL REF J.MOL.BIOL. V. 386 1357 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19013177 JRNL DOI 10.1016/J.JMB.2008.10.079 REMARK 2 REMARK 2 RESOLUTION. 10.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LOCALFIT, SITUS, EMAN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1DM9 REMARK 3 REFINEMENT SPACE : RECIPROCAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : BEST VISUAL FIT, BEST CORRELATION REMARK 3 VALUE REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--COLORES REFINEMENT PROTOCOL--MULTI REMARK 3 -RIGID BODY REFINEMENT REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.540 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 10.00 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: EMAN SOFTWARE REMARK 4 REMARK 4 3BBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045329. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 50S.NC-TRNA.HSP15 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1.50 REMARK 245 MAXIMUM DEFOCUS (NM) : 3.50 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 ASN A 105 CG OD1 ND2 REMARK 470 LEU A 107 CG CD1 CD2 REMARK 470 THR A 108 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 6 40.81 -92.72 REMARK 500 SER A 43 -160.21 -125.00 REMARK 500 ALA A 78 -64.22 -28.13 REMARK 500 ALA A 82 -22.44 -28.19 REMARK 500 LEU A 107 34.77 -74.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DM9 RELATED DB: PDB REMARK 900 DIMER OF HSP15 PROTEIN REMARK 900 RELATED ID: 3BBV RELATED DB: PDB REMARK 900 RELATED ID: 3BBX RELATED DB: PDB REMARK 900 RELATED ID: EMD-1455 RELATED DB: EMDB DBREF 3BBU A 5 108 UNP P0ACG8 HSLR_ECOLI 5 108 SEQRES 1 A 104 PRO ALA VAL GLU VAL ARG LEU ASP LYS TRP LEU TRP ALA SEQRES 2 A 104 ALA ARG PHE TYR LYS THR ARG ALA LEU ALA ARG GLU MET SEQRES 3 A 104 ILE GLU GLY GLY LYS VAL HIS TYR ASN GLY GLN ARG SER SEQRES 4 A 104 LYS PRO SER LYS ILE VAL GLU LEU ASN ALA THR LEU THR SEQRES 5 A 104 LEU ARG GLN GLY ASN ASP GLU ARG THR VAL ILE VAL LYS SEQRES 6 A 104 ALA ILE THR GLU GLN ARG ARG PRO ALA SER GLU ALA ALA SEQRES 7 A 104 LEU LEU TYR GLU GLU THR ALA GLU SER VAL GLU LYS ARG SEQRES 8 A 104 GLU LYS MET ALA LEU ALA ARG LYS LEU ASN ALA LEU THR HELIX 1 1 ARG A 10 ALA A 18 1 9 HELIX 2 2 THR A 23 GLY A 33 1 11 HELIX 3 3 PRO A 77 ALA A 82 1 6 HELIX 4 4 THR A 88 LEU A 107 1 20 SHEET 1 A 5 GLN A 41 ARG A 42 0 SHEET 2 A 5 VAL A 36 TYR A 38 -1 N TYR A 38 O GLN A 41 SHEET 3 A 5 THR A 54 GLN A 59 -1 O THR A 56 N HIS A 37 SHEET 4 A 5 ASP A 62 VAL A 68 -1 O ASP A 62 N GLN A 59 SHEET 5 A 5 TYR A 85 GLU A 87 -1 O GLU A 86 N ILE A 67 CRYST1 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000