HEADER SIGNALING PROTEIN/TRANSPORT PROTEIN 12-NOV-07 3BC1 TITLE CRYSTAL STRUCTURE OF THE COMPLEX RAB27A-SLP2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-27A; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: RESIDUES IN DATABASE 1-193; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SYNAPTOTAGMIN-LIKE PROTEIN 2; COMPND 10 CHAIN: B, F; COMPND 11 FRAGMENT: SLP2A RAB-BINDING DOMAIN; COMPND 12 SYNONYM: SLP2-A, EXOPHILIN-4; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)LYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)LYSS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS RAB27, GTPASE, RAB, SIGNALING PROTEIN, GDPNP, SLP2A, EXOPHILIN-4, KEYWDS 2 GTP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, KEYWDS 3 PRENYLATION, SIGNALING PROTEIN-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.M.G.CHAVAS,K.IHARA,M.KAWASAKI,S.WAKATSUKI REVDAT 5 01-NOV-23 3BC1 1 REMARK REVDAT 4 10-NOV-21 3BC1 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3BC1 1 VERSN REVDAT 2 30-DEC-08 3BC1 1 JRNL VERSN REVDAT 1 02-SEP-08 3BC1 0 JRNL AUTH L.M.G.CHAVAS,K.IHARA,M.KAWASAKI,S.TORII,T.UEJIMA,R.KATO, JRNL AUTH 2 T.IZUMI,S.WAKATSUKI JRNL TITL ELUCIDATION OF RAB27 RECRUITMENT BY ITS EFFECTORS: STRUCTURE JRNL TITL 2 OF RAB27A BOUND TO EXOPHILIN4/SLP2-A JRNL REF STRUCTURE V. 16 1468 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18940603 JRNL DOI 10.1016/J.STR.2008.07.015 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 41151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3909 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2708 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5267 ; 1.054 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6542 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 5.297 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;36.233 ;24.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;13.246 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.740 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4306 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 829 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 768 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2835 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1853 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2010 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.099 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3004 ; 0.676 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 944 ; 0.104 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3655 ; 0.750 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1920 ; 1.199 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1612 ; 1.780 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4971 16.4512 -28.5018 REMARK 3 T TENSOR REMARK 3 T11: -0.0185 T22: -0.0668 REMARK 3 T33: -0.0409 T12: -0.0079 REMARK 3 T13: -0.0021 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2065 L22: 0.3052 REMARK 3 L33: 0.7210 L12: -0.0343 REMARK 3 L13: 0.0216 L23: -0.0515 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.0534 S13: 0.0580 REMARK 3 S21: 0.0292 S22: -0.0297 S23: 0.0023 REMARK 3 S31: -0.0733 S32: 0.0316 S33: 0.0216 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6235 3.4443 -23.0899 REMARK 3 T TENSOR REMARK 3 T11: -0.0198 T22: -0.0266 REMARK 3 T33: -0.0839 T12: 0.0226 REMARK 3 T13: -0.0302 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.8056 L22: 1.4286 REMARK 3 L33: 0.5017 L12: 1.1307 REMARK 3 L13: -0.3148 L23: 0.1167 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.1311 S13: -0.0530 REMARK 3 S21: -0.0471 S22: 0.0064 S23: -0.1364 REMARK 3 S31: 0.0092 S32: 0.1237 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 55 REMARK 3 RESIDUE RANGE : E 65 E 187 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6313 -7.2757 -1.1820 REMARK 3 T TENSOR REMARK 3 T11: -0.0791 T22: -0.0745 REMARK 3 T33: -0.0844 T12: 0.0064 REMARK 3 T13: -0.0081 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6373 L22: 0.7540 REMARK 3 L33: 0.5851 L12: -0.0877 REMARK 3 L13: -0.1778 L23: 0.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0394 S13: -0.0190 REMARK 3 S21: 0.0271 S22: -0.0075 S23: -0.0391 REMARK 3 S31: -0.0209 S32: 0.0731 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 5 F 55 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0951 12.6523 -5.2129 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: -0.0689 REMARK 3 T33: -0.0127 T12: 0.0022 REMARK 3 T13: 0.0015 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.4987 L22: 0.7694 REMARK 3 L33: 0.7163 L12: 0.7121 REMARK 3 L13: 0.3331 L23: 0.2308 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0513 S13: -0.0536 REMARK 3 S21: -0.0374 S22: -0.0065 S23: -0.0594 REMARK 3 S31: -0.0694 S32: 0.0581 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45347 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.345 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IF0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE, CACODYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.75250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.50550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.88850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.50550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.75250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.88850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 189 REMARK 465 ASP A 190 REMARK 465 LYS A 191 REMARK 465 SER A 192 REMARK 465 TRP A 193 REMARK 465 ALA B 57 REMARK 465 LYS B 58 REMARK 465 ALA B 59 REMARK 465 LYS B 60 REMARK 465 ARG B 61 REMARK 465 HIS B 62 REMARK 465 ALA B 63 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 ASP E 3 REMARK 465 ASN E 56 REMARK 465 GLY E 57 REMARK 465 PRO E 58 REMARK 465 ASP E 59 REMARK 465 GLY E 60 REMARK 465 ALA E 61 REMARK 465 VAL E 62 REMARK 465 GLY E 63 REMARK 465 ARG E 64 REMARK 465 SER E 188 REMARK 465 VAL E 189 REMARK 465 ASP E 190 REMARK 465 LYS E 191 REMARK 465 SER E 192 REMARK 465 TRP E 193 REMARK 465 GLU F 56 REMARK 465 ALA F 57 REMARK 465 LYS F 58 REMARK 465 ALA F 59 REMARK 465 LYS F 60 REMARK 465 ARG F 61 REMARK 465 HIS F 62 REMARK 465 ALA F 63 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 134 38.60 73.42 REMARK 500 LEU A 137 54.51 -98.62 REMARK 500 LYS E 134 39.87 71.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 194 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 23 OG1 REMARK 620 2 THR A 41 OG1 86.8 REMARK 620 3 GNP A 195 O3G 177.1 93.1 REMARK 620 4 GNP A 195 O2B 88.5 174.8 91.7 REMARK 620 5 HOH A 200 O 91.1 88.9 91.8 89.0 REMARK 620 6 HOH A 205 O 84.8 94.4 92.3 87.3 174.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 194 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR E 23 OG1 REMARK 620 2 THR E 41 OG1 84.7 REMARK 620 3 GNP E 195 O3G 173.5 90.3 REMARK 620 4 GNP E 195 O2B 90.8 175.3 94.2 REMARK 620 5 HOH E 305 O 84.9 93.7 91.2 87.3 REMARK 620 6 HOH E 311 O 88.9 86.1 95.0 92.4 173.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP E 195 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IF0 RELATED DB: PDB REMARK 900 RAB27B INACTIVE FORM REMARK 900 RELATED ID: 2IEY RELATED DB: PDB REMARK 900 RAB27B INACTIVE FORM REMARK 900 RELATED ID: 2IEZ RELATED DB: PDB REMARK 900 RAB27B INACTIVE FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE FOR CHAIN B, F IS Q9HCH5-3, REMARK 999 ISOFORM 3. DBREF 3BC1 A 1 193 UNP Q9ERI2 RB27A_MOUSE 1 193 DBREF 3BC1 B 10 62 UNP Q9HCH5 SYTL2_HUMAN 10 62 DBREF 3BC1 E 1 193 UNP Q9ERI2 RB27A_MOUSE 1 193 DBREF 3BC1 F 10 62 UNP Q9HCH5 SYTL2_HUMAN 10 62 SEQADV 3BC1 GLY A -1 UNP Q9ERI2 EXPRESSION TAG SEQADV 3BC1 SER A 0 UNP Q9ERI2 EXPRESSION TAG SEQADV 3BC1 LEU A 78 UNP Q9ERI2 GLN 78 ENGINEERED MUTATION SEQADV 3BC1 SER A 123 UNP Q9ERI2 CYS 123 ENGINEERED MUTATION SEQADV 3BC1 SER A 188 UNP Q9ERI2 CYS 188 ENGINEERED MUTATION SEQADV 3BC1 GLY B 5 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 SER B 6 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 PRO B 7 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 GLU B 8 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 PHE B 9 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 ALA B 63 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 GLY E -1 UNP Q9ERI2 EXPRESSION TAG SEQADV 3BC1 SER E 0 UNP Q9ERI2 EXPRESSION TAG SEQADV 3BC1 LEU E 78 UNP Q9ERI2 GLN 78 ENGINEERED MUTATION SEQADV 3BC1 SER E 123 UNP Q9ERI2 CYS 123 ENGINEERED MUTATION SEQADV 3BC1 SER E 188 UNP Q9ERI2 CYS 188 ENGINEERED MUTATION SEQADV 3BC1 GLY F 5 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 SER F 6 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 PRO F 7 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 GLU F 8 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 PHE F 9 UNP Q9HCH5 EXPRESSION TAG SEQADV 3BC1 ALA F 63 UNP Q9HCH5 EXPRESSION TAG SEQRES 1 A 195 GLY SER MET SER ASP GLY ASP TYR ASP TYR LEU ILE LYS SEQRES 2 A 195 PHE LEU ALA LEU GLY ASP SER GLY VAL GLY LYS THR SER SEQRES 3 A 195 VAL LEU TYR GLN TYR THR ASP GLY LYS PHE ASN SER LYS SEQRES 4 A 195 PHE ILE THR THR VAL GLY ILE ASP PHE ARG GLU LYS ARG SEQRES 5 A 195 VAL VAL TYR ARG ALA ASN GLY PRO ASP GLY ALA VAL GLY SEQRES 6 A 195 ARG GLY GLN ARG ILE HIS LEU GLN LEU TRP ASP THR ALA SEQRES 7 A 195 GLY LEU GLU ARG PHE ARG SER LEU THR THR ALA PHE PHE SEQRES 8 A 195 ARG ASP ALA MET GLY PHE LEU LEU LEU PHE ASP LEU THR SEQRES 9 A 195 ASN GLU GLN SER PHE LEU ASN VAL ARG ASN TRP ILE SER SEQRES 10 A 195 GLN LEU GLN MET HIS ALA TYR SER GLU ASN PRO ASP ILE SEQRES 11 A 195 VAL LEU CYS GLY ASN LYS SER ASP LEU GLU ASP GLN ARG SEQRES 12 A 195 ALA VAL LYS GLU GLU GLU ALA ARG GLU LEU ALA GLU LYS SEQRES 13 A 195 TYR GLY ILE PRO TYR PHE GLU THR SER ALA ALA ASN GLY SEQRES 14 A 195 THR ASN ILE SER HIS ALA ILE GLU MET LEU LEU ASP LEU SEQRES 15 A 195 ILE MET LYS ARG MET GLU ARG SER VAL ASP LYS SER TRP SEQRES 1 B 59 GLY SER PRO GLU PHE GLU GLU GLN GLU ALA ILE MET LYS SEQRES 2 B 59 VAL LEU GLN ARG ASP ALA ALA LEU LYS ARG ALA GLU GLU SEQRES 3 B 59 GLU ARG VAL ARG HIS LEU PRO GLU LYS ILE LYS ASP ASP SEQRES 4 B 59 GLN GLN LEU LYS ASN MET SER GLY GLN TRP PHE TYR GLU SEQRES 5 B 59 ALA LYS ALA LYS ARG HIS ALA SEQRES 1 E 195 GLY SER MET SER ASP GLY ASP TYR ASP TYR LEU ILE LYS SEQRES 2 E 195 PHE LEU ALA LEU GLY ASP SER GLY VAL GLY LYS THR SER SEQRES 3 E 195 VAL LEU TYR GLN TYR THR ASP GLY LYS PHE ASN SER LYS SEQRES 4 E 195 PHE ILE THR THR VAL GLY ILE ASP PHE ARG GLU LYS ARG SEQRES 5 E 195 VAL VAL TYR ARG ALA ASN GLY PRO ASP GLY ALA VAL GLY SEQRES 6 E 195 ARG GLY GLN ARG ILE HIS LEU GLN LEU TRP ASP THR ALA SEQRES 7 E 195 GLY LEU GLU ARG PHE ARG SER LEU THR THR ALA PHE PHE SEQRES 8 E 195 ARG ASP ALA MET GLY PHE LEU LEU LEU PHE ASP LEU THR SEQRES 9 E 195 ASN GLU GLN SER PHE LEU ASN VAL ARG ASN TRP ILE SER SEQRES 10 E 195 GLN LEU GLN MET HIS ALA TYR SER GLU ASN PRO ASP ILE SEQRES 11 E 195 VAL LEU CYS GLY ASN LYS SER ASP LEU GLU ASP GLN ARG SEQRES 12 E 195 ALA VAL LYS GLU GLU GLU ALA ARG GLU LEU ALA GLU LYS SEQRES 13 E 195 TYR GLY ILE PRO TYR PHE GLU THR SER ALA ALA ASN GLY SEQRES 14 E 195 THR ASN ILE SER HIS ALA ILE GLU MET LEU LEU ASP LEU SEQRES 15 E 195 ILE MET LYS ARG MET GLU ARG SER VAL ASP LYS SER TRP SEQRES 1 F 59 GLY SER PRO GLU PHE GLU GLU GLN GLU ALA ILE MET LYS SEQRES 2 F 59 VAL LEU GLN ARG ASP ALA ALA LEU LYS ARG ALA GLU GLU SEQRES 3 F 59 GLU ARG VAL ARG HIS LEU PRO GLU LYS ILE LYS ASP ASP SEQRES 4 F 59 GLN GLN LEU LYS ASN MET SER GLY GLN TRP PHE TYR GLU SEQRES 5 F 59 ALA LYS ALA LYS ARG HIS ALA HET GNP A 195 32 HET MG A 194 1 HET GNP E 195 32 HET MG E 194 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 5 GNP 2(C10 H17 N6 O13 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *351(H2 O) HELIX 1 1 GLY A 21 GLY A 32 1 12 HELIX 2 2 LEU A 78 ARG A 80 5 3 HELIX 3 3 PHE A 81 PHE A 88 1 8 HELIX 4 4 ASN A 103 ASN A 109 1 7 HELIX 5 5 ASN A 109 ALA A 121 1 13 HELIX 6 6 LEU A 137 ARG A 141 5 5 HELIX 7 7 LYS A 144 GLY A 156 1 13 HELIX 8 8 ASN A 169 SER A 188 1 20 HELIX 9 9 SER B 6 LEU B 36 1 31 HELIX 10 10 PRO B 37 LYS B 39 5 3 HELIX 11 11 ASP B 42 SER B 50 1 9 HELIX 12 12 GLY B 51 GLU B 56 5 6 HELIX 13 13 GLY E 21 GLY E 32 1 12 HELIX 14 14 LEU E 78 ARG E 80 5 3 HELIX 15 15 PHE E 81 PHE E 88 1 8 HELIX 16 16 PHE E 89 ALA E 92 5 4 HELIX 17 17 ASN E 103 ASN E 109 1 7 HELIX 18 18 ASN E 109 ALA E 121 1 13 HELIX 19 19 LEU E 137 ARG E 141 5 5 HELIX 20 20 LYS E 144 GLY E 156 1 13 HELIX 21 21 ASN E 169 ARG E 187 1 19 HELIX 22 22 SER F 6 HIS F 35 1 30 HELIX 23 23 HIS F 35 ILE F 40 1 6 HELIX 24 24 ASP F 42 SER F 50 1 9 SHEET 1 A 6 ILE A 44 TYR A 53 0 SHEET 2 A 6 GLN A 66 THR A 75 -1 O ASP A 74 N ASP A 45 SHEET 3 A 6 TYR A 8 LEU A 15 1 N PHE A 12 O TRP A 73 SHEET 4 A 6 GLY A 94 ASP A 100 1 O LEU A 98 N LEU A 15 SHEET 5 A 6 ILE A 128 ASN A 133 1 O ASN A 133 N PHE A 99 SHEET 6 A 6 TYR A 159 GLU A 161 1 O PHE A 160 N GLY A 132 SHEET 1 B 6 ILE E 44 TYR E 53 0 SHEET 2 B 6 GLN E 66 THR E 75 -1 O GLN E 66 N TYR E 53 SHEET 3 B 6 TYR E 8 LEU E 15 1 N TYR E 8 O HIS E 69 SHEET 4 B 6 GLY E 94 ASP E 100 1 O LEU E 98 N LEU E 15 SHEET 5 B 6 ASP E 127 ASN E 133 1 O ASN E 133 N PHE E 99 SHEET 6 B 6 TYR E 159 GLU E 161 1 O PHE E 160 N GLY E 132 LINK OG1 THR A 23 MG MG A 194 1555 1555 2.05 LINK OG1 THR A 41 MG MG A 194 1555 1555 2.02 LINK MG MG A 194 O3G GNP A 195 1555 1555 2.01 LINK MG MG A 194 O2B GNP A 195 1555 1555 2.08 LINK MG MG A 194 O HOH A 200 1555 1555 2.08 LINK MG MG A 194 O HOH A 205 1555 1555 2.20 LINK OG1 THR E 23 MG MG E 194 1555 1555 2.13 LINK OG1 THR E 41 MG MG E 194 1555 1555 2.01 LINK MG MG E 194 O3G GNP E 195 1555 1555 2.06 LINK MG MG E 194 O2B GNP E 195 1555 1555 2.02 LINK MG MG E 194 O HOH E 305 1555 1555 2.18 LINK MG MG E 194 O HOH E 311 1555 1555 2.06 CISPEP 1 PHE F 54 TYR F 55 0 22.94 SITE 1 AC1 4 THR A 23 THR A 41 HOH A 200 HOH A 205 SITE 1 AC2 4 THR E 23 THR E 41 HOH E 305 HOH E 311 SITE 1 AC3 25 SER A 18 GLY A 19 GLY A 21 LYS A 22 SITE 2 AC3 25 THR A 23 SER A 24 PHE A 34 ASN A 35 SITE 3 AC3 25 SER A 36 PHE A 38 THR A 40 THR A 41 SITE 4 AC3 25 GLY A 77 ASN A 133 LYS A 134 ASP A 136 SITE 5 AC3 25 LEU A 137 SER A 163 ALA A 164 ALA A 165 SITE 6 AC3 25 HOH A 196 HOH A 200 HOH A 205 HOH A 210 SITE 7 AC3 25 ASN E 166 SITE 1 AC4 31 ASN A 166 SER E 18 GLY E 19 GLY E 21 SITE 2 AC4 31 LYS E 22 THR E 23 SER E 24 PHE E 34 SITE 3 AC4 31 ASN E 35 SER E 36 LYS E 37 PHE E 38 SITE 4 AC4 31 THR E 40 THR E 41 GLY E 77 ASN E 133 SITE 5 AC4 31 LYS E 134 ASP E 136 LEU E 137 GLU E 153 SITE 6 AC4 31 LYS E 154 SER E 163 ALA E 164 ALA E 165 SITE 7 AC4 31 HOH E 305 HOH E 311 HOH E 315 HOH E 319 SITE 8 AC4 31 HOH E 322 HOH E 326 HOH E 345 CRYST1 53.505 77.777 115.011 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008695 0.00000