data_3BD1 # _entry.id 3BD1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BD1 pdb_00003bd1 10.2210/pdb3bd1/pdb RCSB RCSB045368 ? ? WWPDB D_1000045368 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2PIJ _pdbx_database_related.details 'Structure of the Cro protein from prophage Pfl 6 in Pseudomonas fluorescens Pf-5' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3BD1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, B.M.' 1 'Roberts, S.A.' 2 'Montfort, W.R.' 3 'Cordes, M.H.' 4 # _citation.id primary _citation.title ;Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds ; _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 2343 _citation.page_last 2348 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18227506 _citation.pdbx_database_id_DOI 10.1073/pnas.0711589105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Roessler, C.G.' 1 ? primary 'Hall, B.M.' 2 ? primary 'Anderson, W.J.' 3 ? primary 'Ingram, W.M.' 4 ? primary 'Roberts, S.A.' 5 ? primary 'Montfort, W.R.' 6 ? primary 'Cordes, M.H.' 7 ? # _cell.entry_id 3BD1 _cell.length_a 66.970 _cell.length_b 66.970 _cell.length_c 54.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BD1 _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cro protein' 8278.416 3 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MNAIDIAINKLGSVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVICRELRPDVFGASPAGHRPEASNAAA _entity_poly.pdbx_seq_one_letter_code_can MNAIDIAINKLGSVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVICRELRPDVFGASPAGHRPEASNAAA _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ALA n 1 4 ILE n 1 5 ASP n 1 6 ILE n 1 7 ALA n 1 8 ILE n 1 9 ASN n 1 10 LYS n 1 11 LEU n 1 12 GLY n 1 13 SER n 1 14 VAL n 1 15 SER n 1 16 ALA n 1 17 LEU n 1 18 ALA n 1 19 ALA n 1 20 SER n 1 21 LEU n 1 22 GLY n 1 23 VAL n 1 24 ARG n 1 25 GLN n 1 26 SER n 1 27 ALA n 1 28 ILE n 1 29 SER n 1 30 ASN n 1 31 TRP n 1 32 ARG n 1 33 ALA n 1 34 ARG n 1 35 GLY n 1 36 ARG n 1 37 VAL n 1 38 PRO n 1 39 ALA n 1 40 GLU n 1 41 ARG n 1 42 CYS n 1 43 ILE n 1 44 ASP n 1 45 ILE n 1 46 GLU n 1 47 ARG n 1 48 VAL n 1 49 THR n 1 50 ASN n 1 51 GLY n 1 52 ALA n 1 53 VAL n 1 54 ILE n 1 55 CYS n 1 56 ARG n 1 57 GLU n 1 58 LEU n 1 59 ARG n 1 60 PRO n 1 61 ASP n 1 62 VAL n 1 63 PHE n 1 64 GLY n 1 65 ALA n 1 66 SER n 1 67 PRO n 1 68 ALA n 1 69 GLY n 1 70 HIS n 1 71 ARG n 1 72 PRO n 1 73 GLU n 1 74 ALA n 1 75 SER n 1 76 ASN n 1 77 ALA n 1 78 ALA n 1 79 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Xylella _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Xylella fastidiosa' _entity_src_gen.gene_src_strain Ann-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xylella fastidiosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 155920 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3R0L1_XYLFA _struct_ref.pdbx_db_accession Q3R0L1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MNAIDIAINKLGSVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVICRELRPDVFGASPAGHRPEASNAAA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BD1 A 1 ? 79 ? Q3R0L1 1 ? 79 ? 1 79 2 1 3BD1 B 1 ? 79 ? Q3R0L1 1 ? 79 ? 1 79 3 1 3BD1 C 1 ? 79 ? Q3R0L1 1 ? 79 ? 1 79 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 3BD1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 56.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;16% glycerol, 1.5 M ammonium sulfate, 0.1 M Tris, 1 mM TCEP-hydrochloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_temp 100 _diffrn.id 1 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2005-11-05 _diffrn_detector.diffrn_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'BENT Ge(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9002 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9002 _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3BD1 _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 58.030 _reflns.number_obs 53726 _reflns.pdbx_scaling_rejects 1444 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_netI_over_sigmaI 13.300 _reflns.pdbx_chi_squared 0.990 _reflns.pdbx_redundancy 3.610 _reflns.percent_possible_obs 98.600 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 23.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.40 1.45 ? 19627 ? 0.386 3.2 ? 1.010 3.65 ? 5367 99.70 1 1 1.45 1.51 ? 19624 ? 0.313 3.7 ? 0.990 3.65 ? 5367 99.60 2 1 1.51 1.58 ? 19470 ? 0.248 4.5 ? 1.000 3.64 ? 5327 99.80 3 1 1.58 1.66 ? 19726 ? 0.192 5.6 ? 1.000 3.65 ? 5385 99.90 4 1 1.66 1.76 ? 19734 ? 0.138 7.5 ? 0.990 3.65 ? 5383 100.00 5 1 1.76 1.90 ? 19695 ? 0.101 9.7 ? 0.950 3.68 ? 5321 99.90 6 1 1.90 2.09 ? 19802 ? 0.063 14.8 ? 0.930 3.65 ? 5392 100.00 7 1 2.09 2.39 ? 19699 ? 0.046 20.1 ? 0.930 3.64 ? 5376 100.00 8 1 2.39 3.01 ? 19401 ? 0.035 26.8 ? 0.970 3.59 ? 5358 100.00 9 1 3.01 17.06 ? 15717 ? 0.025 44.3 ? 1.190 3.25 ? 4670 87.20 10 1 # _refine.entry_id 3BD1 _refine.ls_d_res_high 1.400 _refine.ls_d_res_low 17.060 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.500 _refine.ls_number_reflns_obs 52945 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.ls_R_factor_obs 0.147 _refine.ls_R_factor_R_work 0.147 _refine.ls_R_factor_R_free 0.182 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 2697 _refine.B_iso_mean 18.770 _refine.aniso_B[1][1] -0.730 _refine.aniso_B[2][2] -0.730 _refine.aniso_B[3][3] 1.100 _refine.aniso_B[1][2] -0.370 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.pdbx_overall_ESU_R 0.046 _refine.pdbx_overall_ESU_R_Free 0.047 _refine.overall_SU_ML 0.028 _refine.overall_SU_B 1.594 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'ACORN (DDM)' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 55642 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB entry 2HIN' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1441 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 1630 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 17.060 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1518 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1072 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2054 1.792 1.970 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2587 2.700 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 204 4.354 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 64 32.920 21.562 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 260 12.905 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24 15.105 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 240 0.103 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1692 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 317 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 357 0.231 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1184 0.237 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 793 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 842 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 103 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 12 0.243 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 56 0.333 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 22 0.147 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1261 5.283 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 399 3.971 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1565 5.579 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 588 9.176 9.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 482 12.145 12.000 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3098 5.312 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 155 18.588 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2577 9.454 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.45 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.580 _refine_ls_shell.number_reflns_R_work 3798 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 198 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3996 _refine_ls_shell.number_reflns_obs 3996 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BD1 _struct.title 'Structure of the Cro protein from putative prophage element Xfaso 1 in Xylella fastidiosa strain Ann-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BD1 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'transcription factor, helix-turn-helix, prophage, structural evolution, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 2 ? K N N 5 ? L N N 5 ? M N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? GLY A 12 ? ASN A 2 GLY A 12 1 ? 11 HELX_P HELX_P2 2 SER A 13 ? GLY A 22 ? SER A 13 GLY A 22 1 ? 10 HELX_P HELX_P3 3 ARG A 24 ? GLY A 35 ? ARG A 24 GLY A 35 1 ? 12 HELX_P HELX_P4 4 PRO A 38 ? GLU A 40 ? PRO A 38 GLU A 40 5 ? 3 HELX_P HELX_P5 5 ARG A 41 ? THR A 49 ? ARG A 41 THR A 49 1 ? 9 HELX_P HELX_P6 6 ILE A 54 ? ARG A 59 ? ILE A 54 ARG A 59 1 ? 6 HELX_P HELX_P7 7 ASN B 2 ? GLY B 12 ? ASN B 2 GLY B 12 1 ? 11 HELX_P HELX_P8 8 SER B 13 ? GLY B 22 ? SER B 13 GLY B 22 1 ? 10 HELX_P HELX_P9 9 ARG B 24 ? GLY B 35 ? ARG B 24 GLY B 35 1 ? 12 HELX_P HELX_P10 10 PRO B 38 ? GLU B 40 ? PRO B 38 GLU B 40 5 ? 3 HELX_P HELX_P11 11 ARG B 41 ? THR B 49 ? ARG B 41 THR B 49 1 ? 9 HELX_P HELX_P12 12 ILE B 54 ? ARG B 59 ? ILE B 54 ARG B 59 1 ? 6 HELX_P HELX_P13 13 ASN C 2 ? GLY C 12 ? ASN C 2 GLY C 12 1 ? 11 HELX_P HELX_P14 14 SER C 13 ? GLY C 22 ? SER C 13 GLY C 22 1 ? 10 HELX_P HELX_P15 15 ARG C 24 ? GLY C 35 ? ARG C 24 GLY C 35 1 ? 12 HELX_P HELX_P16 16 PRO C 38 ? GLU C 40 ? PRO C 38 GLU C 40 5 ? 3 HELX_P HELX_P17 17 ARG C 41 ? THR C 49 ? ARG C 41 THR C 49 1 ? 9 HELX_P HELX_P18 18 ILE C 54 ? ARG C 59 ? ILE C 54 ARG C 59 1 ? 6 HELX_P HELX_P19 19 ARG C 59 ? GLY C 64 ? ARG C 59 GLY C 64 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C SO4 160 ? 5 'BINDING SITE FOR RESIDUE SO4 C 160' AC2 Software C SO4 161 ? 4 'BINDING SITE FOR RESIDUE SO4 C 161' AC3 Software C CL 162 ? 5 'BINDING SITE FOR RESIDUE CL C 162' AC4 Software A GOL 156 ? 6 'BINDING SITE FOR RESIDUE GOL A 156' AC5 Software A GOL 157 ? 7 'BINDING SITE FOR RESIDUE GOL A 157' AC6 Software C GOL 158 ? 5 'BINDING SITE FOR RESIDUE GOL C 158' AC7 Software B GOL 159 ? 3 'BINDING SITE FOR RESIDUE GOL B 159' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PRO C 38 ? PRO C 38 . ? 1_555 ? 2 AC1 5 ALA C 39 ? ALA C 39 . ? 1_555 ? 3 AC1 5 ARG C 59 ? ARG C 59 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH C 201 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH C 220 . ? 1_555 ? 6 AC2 4 PRO C 38 ? PRO C 38 . ? 1_555 ? 7 AC2 4 ALA C 39 ? ALA C 39 . ? 1_555 ? 8 AC2 4 ARG C 59 ? ARG C 59 . ? 1_555 ? 9 AC2 4 HOH M . ? HOH C 201 . ? 1_555 ? 10 AC3 5 GLY A 12 ? GLY A 12 . ? 2_444 ? 11 AC3 5 LYS C 10 ? LYS C 10 . ? 2_444 ? 12 AC3 5 SER C 29 ? SER C 29 . ? 1_555 ? 13 AC3 5 ARG C 32 ? ARG C 32 . ? 1_555 ? 14 AC3 5 ASN C 50 ? ASN C 50 . ? 2_444 ? 15 AC4 6 PRO A 38 ? PRO A 38 . ? 1_555 ? 16 AC4 6 ALA A 39 ? ALA A 39 . ? 1_555 ? 17 AC4 6 GLU A 40 ? GLU A 40 . ? 1_555 ? 18 AC4 6 ARG A 59 ? ARG A 59 . ? 1_555 ? 19 AC4 6 ALA B 39 ? ALA B 39 . ? 1_555 ? 20 AC4 6 ARG B 59 ? ARG B 59 . ? 1_555 ? 21 AC5 7 SER A 15 ? SER A 15 . ? 1_555 ? 22 AC5 7 GLN A 25 ? GLN A 25 . ? 1_555 ? 23 AC5 7 HOH K . ? HOH A 180 . ? 1_555 ? 24 AC5 7 HOH K . ? HOH A 203 . ? 1_555 ? 25 AC5 7 ARG B 24 ? ARG B 24 . ? 2_554 ? 26 AC5 7 GLN B 25 ? GLN B 25 . ? 2_554 ? 27 AC5 7 SER B 26 ? SER B 26 . ? 2_554 ? 28 AC6 5 ASP A 5 ? ASP A 5 . ? 2_444 ? 29 AC6 5 ILE A 6 ? ILE A 6 . ? 2_444 ? 30 AC6 5 ASN A 9 ? ASN A 9 . ? 2_444 ? 31 AC6 5 ASN C 2 ? ASN C 2 . ? 3_545 ? 32 AC6 5 ASN C 9 ? ASN C 9 . ? 1_555 ? 33 AC7 3 ARG B 34 ? ARG B 34 . ? 1_555 ? 34 AC7 3 ARG B 36 ? ARG B 36 . ? 1_555 ? 35 AC7 3 PRO B 38 ? PRO B 38 . ? 1_555 ? # _database_PDB_matrix.entry_id 3BD1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3BD1 _atom_sites.fract_transf_matrix[1][1] 0.014932 _atom_sites.fract_transf_matrix[1][2] 0.008621 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017242 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018396 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 ? ? ? A . n A 1 67 PRO 67 67 ? ? ? A . n A 1 68 ALA 68 68 ? ? ? A . n A 1 69 GLY 69 69 ? ? ? A . n A 1 70 HIS 70 70 ? ? ? A . n A 1 71 ARG 71 71 ? ? ? A . n A 1 72 PRO 72 72 ? ? ? A . n A 1 73 GLU 73 73 ? ? ? A . n A 1 74 ALA 74 74 ? ? ? A . n A 1 75 SER 75 75 ? ? ? A . n A 1 76 ASN 76 76 ? ? ? A . n A 1 77 ALA 77 77 ? ? ? A . n A 1 78 ALA 78 78 ? ? ? A . n A 1 79 ALA 79 79 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 ILE 4 4 4 ILE ILE B . n B 1 5 ASP 5 5 5 ASP ASP B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 ASN 9 9 9 ASN ASN B . n B 1 10 LYS 10 10 10 LYS LYS B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 SER 13 13 13 SER SER B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 VAL 23 23 23 VAL VAL B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 TRP 31 31 31 TRP TRP B . n B 1 32 ARG 32 32 32 ARG ARG B . n B 1 33 ALA 33 33 33 ALA ALA B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 PRO 38 38 38 PRO PRO B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 CYS 42 42 42 CYS CYS B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 THR 49 49 49 THR THR B . n B 1 50 ASN 50 50 50 ASN ASN B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 VAL 53 53 53 VAL VAL B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 CYS 55 55 55 CYS CYS B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 PRO 60 60 60 PRO PRO B . n B 1 61 ASP 61 61 61 ASP ASP B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 PHE 63 63 63 PHE PHE B . n B 1 64 GLY 64 64 ? ? ? B . n B 1 65 ALA 65 65 ? ? ? B . n B 1 66 SER 66 66 ? ? ? B . n B 1 67 PRO 67 67 ? ? ? B . n B 1 68 ALA 68 68 ? ? ? B . n B 1 69 GLY 69 69 ? ? ? B . n B 1 70 HIS 70 70 ? ? ? B . n B 1 71 ARG 71 71 ? ? ? B . n B 1 72 PRO 72 72 ? ? ? B . n B 1 73 GLU 73 73 ? ? ? B . n B 1 74 ALA 74 74 ? ? ? B . n B 1 75 SER 75 75 ? ? ? B . n B 1 76 ASN 76 76 ? ? ? B . n B 1 77 ALA 77 77 ? ? ? B . n B 1 78 ALA 78 78 ? ? ? B . n B 1 79 ALA 79 79 ? ? ? B . n C 1 1 MET 1 1 1 MET MET C . n C 1 2 ASN 2 2 2 ASN ASN C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 ILE 4 4 4 ILE ILE C . n C 1 5 ASP 5 5 5 ASP ASP C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 ALA 7 7 7 ALA ALA C . n C 1 8 ILE 8 8 8 ILE ILE C . n C 1 9 ASN 9 9 9 ASN ASN C . n C 1 10 LYS 10 10 10 LYS LYS C . n C 1 11 LEU 11 11 11 LEU LEU C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 SER 13 13 13 SER SER C . n C 1 14 VAL 14 14 14 VAL VAL C . n C 1 15 SER 15 15 15 SER SER C . n C 1 16 ALA 16 16 16 ALA ALA C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 ALA 18 18 18 ALA ALA C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 SER 20 20 20 SER SER C . n C 1 21 LEU 21 21 21 LEU LEU C . n C 1 22 GLY 22 22 22 GLY GLY C . n C 1 23 VAL 23 23 23 VAL VAL C . n C 1 24 ARG 24 24 24 ARG ARG C . n C 1 25 GLN 25 25 25 GLN GLN C . n C 1 26 SER 26 26 26 SER SER C . n C 1 27 ALA 27 27 27 ALA ALA C . n C 1 28 ILE 28 28 28 ILE ILE C . n C 1 29 SER 29 29 29 SER SER C . n C 1 30 ASN 30 30 30 ASN ASN C . n C 1 31 TRP 31 31 31 TRP TRP C . n C 1 32 ARG 32 32 32 ARG ARG C . n C 1 33 ALA 33 33 33 ALA ALA C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 GLY 35 35 35 GLY GLY C . n C 1 36 ARG 36 36 36 ARG ARG C . n C 1 37 VAL 37 37 37 VAL VAL C . n C 1 38 PRO 38 38 38 PRO PRO C . n C 1 39 ALA 39 39 39 ALA ALA C . n C 1 40 GLU 40 40 40 GLU GLU C . n C 1 41 ARG 41 41 41 ARG ARG C . n C 1 42 CYS 42 42 42 CYS CYS C . n C 1 43 ILE 43 43 43 ILE ILE C . n C 1 44 ASP 44 44 44 ASP ASP C . n C 1 45 ILE 45 45 45 ILE ILE C . n C 1 46 GLU 46 46 46 GLU GLU C . n C 1 47 ARG 47 47 47 ARG ARG C . n C 1 48 VAL 48 48 48 VAL VAL C . n C 1 49 THR 49 49 49 THR THR C . n C 1 50 ASN 50 50 50 ASN ASN C . n C 1 51 GLY 51 51 51 GLY GLY C . n C 1 52 ALA 52 52 52 ALA ALA C . n C 1 53 VAL 53 53 53 VAL VAL C . n C 1 54 ILE 54 54 54 ILE ILE C . n C 1 55 CYS 55 55 55 CYS CYS C . n C 1 56 ARG 56 56 56 ARG ARG C . n C 1 57 GLU 57 57 57 GLU GLU C . n C 1 58 LEU 58 58 58 LEU LEU C . n C 1 59 ARG 59 59 59 ARG ARG C . n C 1 60 PRO 60 60 60 PRO PRO C . n C 1 61 ASP 61 61 61 ASP ASP C . n C 1 62 VAL 62 62 62 VAL VAL C . n C 1 63 PHE 63 63 63 PHE PHE C . n C 1 64 GLY 64 64 64 GLY GLY C . n C 1 65 ALA 65 65 ? ? ? C . n C 1 66 SER 66 66 ? ? ? C . n C 1 67 PRO 67 67 ? ? ? C . n C 1 68 ALA 68 68 ? ? ? C . n C 1 69 GLY 69 69 ? ? ? C . n C 1 70 HIS 70 70 ? ? ? C . n C 1 71 ARG 71 71 ? ? ? C . n C 1 72 PRO 72 72 ? ? ? C . n C 1 73 GLU 73 73 ? ? ? C . n C 1 74 ALA 74 74 ? ? ? C . n C 1 75 SER 75 75 ? ? ? C . n C 1 76 ASN 76 76 ? ? ? C . n C 1 77 ALA 77 77 ? ? ? C . n C 1 78 ALA 78 78 ? ? ? C . n C 1 79 ALA 79 79 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL 1 156 156 GOL GOL A . E 2 GOL 1 157 157 GOL GOL A . F 2 GOL 1 159 159 GOL GOL B . G 3 SO4 1 160 160 SO4 SO4 C . H 4 CL 1 162 162 CL CL C . I 3 SO4 1 161 161 SO4 SO4 C . J 2 GOL 1 158 158 GOL GOL C . K 5 HOH 1 158 158 HOH HOH A . K 5 HOH 2 159 159 HOH HOH A . K 5 HOH 3 160 160 HOH HOH A . K 5 HOH 4 161 161 HOH HOH A . K 5 HOH 5 162 162 HOH HOH A . K 5 HOH 6 163 163 HOH HOH A . K 5 HOH 7 164 164 HOH HOH A . K 5 HOH 8 165 165 HOH HOH A . K 5 HOH 9 166 166 HOH HOH A . K 5 HOH 10 167 167 HOH HOH A . K 5 HOH 11 168 168 HOH HOH A . K 5 HOH 12 169 169 HOH HOH A . K 5 HOH 13 170 170 HOH HOH A . K 5 HOH 14 171 171 HOH HOH A . K 5 HOH 15 172 172 HOH HOH A . K 5 HOH 16 173 173 HOH HOH A . K 5 HOH 17 174 174 HOH HOH A . K 5 HOH 18 175 175 HOH HOH A . K 5 HOH 19 176 176 HOH HOH A . K 5 HOH 20 177 177 HOH HOH A . K 5 HOH 21 178 178 HOH HOH A . K 5 HOH 22 179 179 HOH HOH A . K 5 HOH 23 180 180 HOH HOH A . K 5 HOH 24 181 181 HOH HOH A . K 5 HOH 25 182 182 HOH HOH A . K 5 HOH 26 183 183 HOH HOH A . K 5 HOH 27 184 184 HOH HOH A . K 5 HOH 28 185 185 HOH HOH A . K 5 HOH 29 186 186 HOH HOH A . K 5 HOH 30 187 187 HOH HOH A . K 5 HOH 31 188 188 HOH HOH A . K 5 HOH 32 189 189 HOH HOH A . K 5 HOH 33 190 190 HOH HOH A . K 5 HOH 34 191 191 HOH HOH A . K 5 HOH 35 192 192 HOH HOH A . K 5 HOH 36 193 193 HOH HOH A . K 5 HOH 37 194 194 HOH HOH A . K 5 HOH 38 195 195 HOH HOH A . K 5 HOH 39 196 196 HOH HOH A . K 5 HOH 40 197 197 HOH HOH A . K 5 HOH 41 198 198 HOH HOH A . K 5 HOH 42 199 199 HOH HOH A . K 5 HOH 43 200 200 HOH HOH A . K 5 HOH 44 201 201 HOH HOH A . K 5 HOH 45 202 202 HOH HOH A . K 5 HOH 46 203 203 HOH HOH A . K 5 HOH 47 204 204 HOH HOH A . K 5 HOH 48 205 205 HOH HOH A . K 5 HOH 49 206 206 HOH HOH A . K 5 HOH 50 207 207 HOH HOH A . K 5 HOH 51 208 208 HOH HOH A . K 5 HOH 52 209 209 HOH HOH A . K 5 HOH 53 210 210 HOH HOH A . K 5 HOH 54 211 211 HOH HOH A . K 5 HOH 55 212 212 HOH HOH A . K 5 HOH 56 213 213 HOH HOH A . K 5 HOH 57 214 214 HOH HOH A . K 5 HOH 58 215 215 HOH HOH A . K 5 HOH 59 216 216 HOH HOH A . K 5 HOH 60 217 217 HOH HOH A . K 5 HOH 61 218 218 HOH HOH A . K 5 HOH 62 219 219 HOH HOH A . K 5 HOH 63 220 220 HOH HOH A . K 5 HOH 64 221 221 HOH HOH A . K 5 HOH 65 222 222 HOH HOH A . K 5 HOH 66 223 223 HOH HOH A . K 5 HOH 67 224 224 HOH HOH A . K 5 HOH 68 225 225 HOH HOH A . K 5 HOH 69 226 226 HOH HOH A . L 5 HOH 1 160 160 HOH HOH B . L 5 HOH 2 161 161 HOH HOH B . L 5 HOH 3 162 162 HOH HOH B . L 5 HOH 4 163 163 HOH HOH B . L 5 HOH 5 164 164 HOH HOH B . L 5 HOH 6 165 165 HOH HOH B . L 5 HOH 7 166 166 HOH HOH B . L 5 HOH 8 167 167 HOH HOH B . L 5 HOH 9 168 168 HOH HOH B . L 5 HOH 10 169 169 HOH HOH B . L 5 HOH 11 170 170 HOH HOH B . L 5 HOH 12 171 171 HOH HOH B . L 5 HOH 13 172 172 HOH HOH B . L 5 HOH 14 173 173 HOH HOH B . L 5 HOH 15 174 174 HOH HOH B . L 5 HOH 16 175 175 HOH HOH B . L 5 HOH 17 176 176 HOH HOH B . L 5 HOH 18 177 177 HOH HOH B . L 5 HOH 19 178 178 HOH HOH B . L 5 HOH 20 179 179 HOH HOH B . L 5 HOH 21 180 180 HOH HOH B . L 5 HOH 22 181 181 HOH HOH B . L 5 HOH 23 182 182 HOH HOH B . L 5 HOH 24 183 183 HOH HOH B . L 5 HOH 25 184 184 HOH HOH B . M 5 HOH 1 163 163 HOH HOH C . M 5 HOH 2 164 164 HOH HOH C . M 5 HOH 3 165 165 HOH HOH C . M 5 HOH 4 166 166 HOH HOH C . M 5 HOH 5 167 167 HOH HOH C . M 5 HOH 6 168 168 HOH HOH C . M 5 HOH 7 169 169 HOH HOH C . M 5 HOH 8 170 170 HOH HOH C . M 5 HOH 9 171 171 HOH HOH C . M 5 HOH 10 172 172 HOH HOH C . M 5 HOH 11 173 173 HOH HOH C . M 5 HOH 12 174 174 HOH HOH C . M 5 HOH 13 175 175 HOH HOH C . M 5 HOH 14 176 176 HOH HOH C . M 5 HOH 15 177 177 HOH HOH C . M 5 HOH 16 178 178 HOH HOH C . M 5 HOH 17 179 179 HOH HOH C . M 5 HOH 18 180 180 HOH HOH C . M 5 HOH 19 181 181 HOH HOH C . M 5 HOH 20 182 182 HOH HOH C . M 5 HOH 21 183 183 HOH HOH C . M 5 HOH 22 184 184 HOH HOH C . M 5 HOH 23 185 185 HOH HOH C . M 5 HOH 24 186 186 HOH HOH C . M 5 HOH 25 187 187 HOH HOH C . M 5 HOH 26 188 188 HOH HOH C . M 5 HOH 27 189 189 HOH HOH C . M 5 HOH 28 190 190 HOH HOH C . M 5 HOH 29 191 191 HOH HOH C . M 5 HOH 30 192 192 HOH HOH C . M 5 HOH 31 193 193 HOH HOH C . M 5 HOH 32 194 194 HOH HOH C . M 5 HOH 33 195 195 HOH HOH C . M 5 HOH 34 196 196 HOH HOH C . M 5 HOH 35 197 197 HOH HOH C . M 5 HOH 36 198 198 HOH HOH C . M 5 HOH 37 199 199 HOH HOH C . M 5 HOH 38 200 200 HOH HOH C . M 5 HOH 39 201 201 HOH HOH C . M 5 HOH 40 202 202 HOH HOH C . M 5 HOH 41 203 203 HOH HOH C . M 5 HOH 42 204 204 HOH HOH C . M 5 HOH 43 205 205 HOH HOH C . M 5 HOH 44 206 206 HOH HOH C . M 5 HOH 45 207 207 HOH HOH C . M 5 HOH 46 208 208 HOH HOH C . M 5 HOH 47 209 209 HOH HOH C . M 5 HOH 48 210 210 HOH HOH C . M 5 HOH 49 211 211 HOH HOH C . M 5 HOH 50 212 212 HOH HOH C . M 5 HOH 51 213 213 HOH HOH C . M 5 HOH 52 214 214 HOH HOH C . M 5 HOH 53 215 215 HOH HOH C . M 5 HOH 54 216 216 HOH HOH C . M 5 HOH 55 217 217 HOH HOH C . M 5 HOH 56 218 218 HOH HOH C . M 5 HOH 57 219 219 HOH HOH C . M 5 HOH 58 220 220 HOH HOH C . M 5 HOH 59 221 221 HOH HOH C . M 5 HOH 60 222 222 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M 2 2 A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1020 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 2_444 -y-1,x-y-1,z-1/3 -0.5000000000 -0.8660254038 0.0000000000 -33.4850000000 0.8660254038 -0.5000000000 0.0000000000 -57.9977212914 0.0000000000 0.0000000000 1.0000000000 -18.1200000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.2SSI 'Nov 2 2004' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 XDISPLAYF . ? ? ? ? 'data collection' ? ? ? 4 d*TREK . ? ? ? ? 'data reduction' ? ? ? 5 ACORN . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O4 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 SO4 _pdbx_validate_close_contact.auth_seq_id_1 161 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.79 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE C ARG 36 ? ? CZ C ARG 36 ? ? NH2 C ARG 36 ? ? 116.37 120.30 -3.93 0.50 N 2 1 NE C ARG 47 ? ? CZ C ARG 47 ? ? NH1 C ARG 47 ? ? 125.20 120.30 4.90 0.50 N 3 1 NE C ARG 47 ? ? CZ C ARG 47 ? ? NH2 C ARG 47 ? ? 115.62 120.30 -4.68 0.50 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 66 ? A SER 66 2 1 Y 1 A PRO 67 ? A PRO 67 3 1 Y 1 A ALA 68 ? A ALA 68 4 1 Y 1 A GLY 69 ? A GLY 69 5 1 Y 1 A HIS 70 ? A HIS 70 6 1 Y 1 A ARG 71 ? A ARG 71 7 1 Y 1 A PRO 72 ? A PRO 72 8 1 Y 1 A GLU 73 ? A GLU 73 9 1 Y 1 A ALA 74 ? A ALA 74 10 1 Y 1 A SER 75 ? A SER 75 11 1 Y 1 A ASN 76 ? A ASN 76 12 1 Y 1 A ALA 77 ? A ALA 77 13 1 Y 1 A ALA 78 ? A ALA 78 14 1 Y 1 A ALA 79 ? A ALA 79 15 1 Y 1 B GLY 64 ? B GLY 64 16 1 Y 1 B ALA 65 ? B ALA 65 17 1 Y 1 B SER 66 ? B SER 66 18 1 Y 1 B PRO 67 ? B PRO 67 19 1 Y 1 B ALA 68 ? B ALA 68 20 1 Y 1 B GLY 69 ? B GLY 69 21 1 Y 1 B HIS 70 ? B HIS 70 22 1 Y 1 B ARG 71 ? B ARG 71 23 1 Y 1 B PRO 72 ? B PRO 72 24 1 Y 1 B GLU 73 ? B GLU 73 25 1 Y 1 B ALA 74 ? B ALA 74 26 1 Y 1 B SER 75 ? B SER 75 27 1 Y 1 B ASN 76 ? B ASN 76 28 1 Y 1 B ALA 77 ? B ALA 77 29 1 Y 1 B ALA 78 ? B ALA 78 30 1 Y 1 B ALA 79 ? B ALA 79 31 1 Y 1 C ALA 65 ? C ALA 65 32 1 Y 1 C SER 66 ? C SER 66 33 1 Y 1 C PRO 67 ? C PRO 67 34 1 Y 1 C ALA 68 ? C ALA 68 35 1 Y 1 C GLY 69 ? C GLY 69 36 1 Y 1 C HIS 70 ? C HIS 70 37 1 Y 1 C ARG 71 ? C ARG 71 38 1 Y 1 C PRO 72 ? C PRO 72 39 1 Y 1 C GLU 73 ? C GLU 73 40 1 Y 1 C ALA 74 ? C ALA 74 41 1 Y 1 C SER 75 ? C SER 75 42 1 Y 1 C ASN 76 ? C ASN 76 43 1 Y 1 C ALA 77 ? C ALA 77 44 1 Y 1 C ALA 78 ? C ALA 78 45 1 Y 1 C ALA 79 ? C ALA 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MET N N N N 245 MET CA C N S 246 MET C C N N 247 MET O O N N 248 MET CB C N N 249 MET CG C N N 250 MET SD S N N 251 MET CE C N N 252 MET OXT O N N 253 MET H H N N 254 MET H2 H N N 255 MET HA H N N 256 MET HB2 H N N 257 MET HB3 H N N 258 MET HG2 H N N 259 MET HG3 H N N 260 MET HE1 H N N 261 MET HE2 H N N 262 MET HE3 H N N 263 MET HXT H N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 SO4 S S N N 319 SO4 O1 O N N 320 SO4 O2 O N N 321 SO4 O3 O N N 322 SO4 O4 O N N 323 THR N N N N 324 THR CA C N S 325 THR C C N N 326 THR O O N N 327 THR CB C N R 328 THR OG1 O N N 329 THR CG2 C N N 330 THR OXT O N N 331 THR H H N N 332 THR H2 H N N 333 THR HA H N N 334 THR HB H N N 335 THR HG1 H N N 336 THR HG21 H N N 337 THR HG22 H N N 338 THR HG23 H N N 339 THR HXT H N N 340 TRP N N N N 341 TRP CA C N S 342 TRP C C N N 343 TRP O O N N 344 TRP CB C N N 345 TRP CG C Y N 346 TRP CD1 C Y N 347 TRP CD2 C Y N 348 TRP NE1 N Y N 349 TRP CE2 C Y N 350 TRP CE3 C Y N 351 TRP CZ2 C Y N 352 TRP CZ3 C Y N 353 TRP CH2 C Y N 354 TRP OXT O N N 355 TRP H H N N 356 TRP H2 H N N 357 TRP HA H N N 358 TRP HB2 H N N 359 TRP HB3 H N N 360 TRP HD1 H N N 361 TRP HE1 H N N 362 TRP HE3 H N N 363 TRP HZ2 H N N 364 TRP HZ3 H N N 365 TRP HH2 H N N 366 TRP HXT H N N 367 VAL N N N N 368 VAL CA C N S 369 VAL C C N N 370 VAL O O N N 371 VAL CB C N N 372 VAL CG1 C N N 373 VAL CG2 C N N 374 VAL OXT O N N 375 VAL H H N N 376 VAL H2 H N N 377 VAL HA H N N 378 VAL HB H N N 379 VAL HG11 H N N 380 VAL HG12 H N N 381 VAL HG13 H N N 382 VAL HG21 H N N 383 VAL HG22 H N N 384 VAL HG23 H N N 385 VAL HXT H N N 386 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 SO4 S O1 doub N N 303 SO4 S O2 doub N N 304 SO4 S O3 sing N N 305 SO4 S O4 sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 VAL N CA sing N N 351 VAL N H sing N N 352 VAL N H2 sing N N 353 VAL CA C sing N N 354 VAL CA CB sing N N 355 VAL CA HA sing N N 356 VAL C O doub N N 357 VAL C OXT sing N N 358 VAL CB CG1 sing N N 359 VAL CB CG2 sing N N 360 VAL CB HB sing N N 361 VAL CG1 HG11 sing N N 362 VAL CG1 HG12 sing N N 363 VAL CG1 HG13 sing N N 364 VAL CG2 HG21 sing N N 365 VAL CG2 HG22 sing N N 366 VAL CG2 HG23 sing N N 367 VAL OXT HXT sing N N 368 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SULFATE ION' SO4 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HIN _pdbx_initial_refinement_model.details 'PDB entry 2HIN' #