HEADER HYDROLASE 14-NOV-07 3BDC TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS AT TITLE 2 CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 5 EC: 3.1.31.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 4 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS STAPHYLOCOCCAL NUCLEASE, HYPERSTABLE VARIANT, HYDROLASE, PDTP EXPDTA X-RAY DIFFRACTION AUTHOR V.KHANGULOV,J.L.SCHLESSMAN,B.E.GARCIA-MORENO REVDAT 5 30-AUG-23 3BDC 1 REMARK REVDAT 4 20-OCT-21 3BDC 1 REMARK SEQADV REVDAT 3 06-OCT-09 3BDC 1 JRNL REVDAT 2 24-FEB-09 3BDC 1 VERSN REVDAT 1 04-NOV-08 3BDC 0 JRNL AUTH C.A.CASTANEDA,C.A.FITCH,A.MAJUMDAR,V.KHANGULOV, JRNL AUTH 2 J.L.SCHLESSMAN,B.E.GARCIA-MORENO JRNL TITL MOLECULAR DETERMINANTS OF THE PK(A) VALUES OF ASP AND GLU JRNL TITL 2 RESIDUES IN STAPHYLOCOCCAL NUCLEASE. JRNL REF PROTEINS V. 77 570 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19533744 JRNL DOI 10.1002/PROT.22470 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 10735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1179 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1093 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1474 ; 1.772 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 133 ; 5.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;34.112 ;24.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;16.675 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 9.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 160 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 789 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 466 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 737 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 119 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.121 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 662 ; 1.110 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1038 ; 1.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 490 ; 2.535 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 433 ; 3.785 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GE111 REMARK 200 OPTICS : MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER APEX II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.18 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15200 REMARK 200 FOR THE DATA SET : 51.8980 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.86 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41500 REMARK 200 FOR SHELL : 6.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TQO.PDB WHERE ALL WATERS REMOVED, ALL BS=20.0 REMARK 200 A^2, AND E92A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.32550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -72.98 -116.07 REMARK 500 TYR A 54 -5.40 70.33 REMARK 500 ASN A 138 -100.68 49.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 150 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 ASP A 40 OD1 83.4 REMARK 620 3 THR A 41 O 87.8 75.2 REMARK 620 4 GLU A 43 OE2 154.9 120.6 104.5 REMARK 620 5 HOH A 157 O 76.0 136.4 140.3 80.8 REMARK 620 6 HOH A 162 O 78.1 137.2 65.9 87.0 75.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RBM RELATED DB: PDB REMARK 900 RELATED ID: 3C1E RELATED DB: PDB REMARK 900 RELATED ID: 3C1F RELATED DB: PDB REMARK 900 RELATED ID: 3D4D RELATED DB: PDB REMARK 900 RELATED ID: 3D6C RELATED DB: PDB REMARK 900 RELATED ID: 3DMU RELATED DB: PDB REMARK 900 RELATED ID: 3E5S RELATED DB: PDB REMARK 900 RELATED ID: 3EJI RELATED DB: PDB REMARK 900 RELATED ID: 3ERO RELATED DB: PDB REMARK 900 RELATED ID: 3ERQ RELATED DB: PDB REMARK 900 RELATED ID: 3EVQ RELATED DB: PDB DBREF 3BDC A 1 149 UNP P00644 NUC_STAAW 83 231 SEQADV 3BDC A UNP P00644 THR 126 DELETION SEQADV 3BDC A UNP P00644 LYS 127 DELETION SEQADV 3BDC A UNP P00644 HIS 128 DELETION SEQADV 3BDC A UNP P00644 PRO 129 DELETION SEQADV 3BDC A UNP P00644 LYS 130 DELETION SEQADV 3BDC A UNP P00644 LYS 131 DELETION SEQADV 3BDC PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 3BDC ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 3BDC GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 3BDC LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 3BDC ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET CA A 150 1 HET THP A 151 25 HETNAM CA CALCIUM ION HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 2 CA CA 2+ FORMUL 3 THP C10 H16 N2 O11 P2 FORMUL 4 HOH *106(H2 O) HELIX 1 1 TYR A 54 ALA A 69 1 16 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 HIS A 121 GLU A 135 1 15 HELIX 4 4 LEU A 137 SER A 141 5 5 SHEET 1 A 7 LYS A 97 MET A 98 0 SHEET 2 A 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 A 7 ILE A 72 GLU A 75 -1 N GLU A 73 O TYR A 93 SHEET 4 A 7 LYS A 9 ASP A 19 -1 N GLU A 10 O VAL A 74 SHEET 5 A 7 THR A 22 TYR A 27 -1 O LYS A 24 N LYS A 16 SHEET 6 A 7 GLN A 30 LEU A 36 -1 O PHE A 34 N VAL A 23 SHEET 7 A 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 B 2 VAL A 39 ASP A 40 0 SHEET 2 B 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 LINK OD2 ASP A 21 CA CA A 150 1555 1555 2.90 LINK OD1 ASP A 40 CA CA A 150 1555 1555 2.72 LINK O THR A 41 CA CA A 150 1555 1555 2.84 LINK OE2 GLU A 43 CA CA A 150 1555 1555 2.93 LINK CA CA A 150 O HOH A 157 1555 1555 2.79 LINK CA CA A 150 O HOH A 162 1555 1555 2.66 SITE 1 AC1 7 ASP A 21 ASP A 40 THR A 41 GLU A 43 SITE 2 AC1 7 THP A 151 HOH A 157 HOH A 162 SITE 1 AC2 18 ARG A 35 ASP A 40 LYS A 84 TYR A 85 SITE 2 AC2 18 ARG A 87 LEU A 89 TYR A 113 TYR A 115 SITE 3 AC2 18 LYS A 127 CA A 150 HOH A 157 HOH A 169 SITE 4 AC2 18 HOH A 177 HOH A 178 HOH A 179 HOH A 185 SITE 5 AC2 18 HOH A 199 HOH A 211 CRYST1 31.097 60.651 36.948 90.00 94.44 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032157 0.000000 0.002497 0.00000 SCALE2 0.000000 0.016488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027147 0.00000 TER 1048 SER A 141 HETATM 1049 CA CA A 150 15.778 11.438 7.839 1.00 22.98 CA HETATM 1050 P2 THP A 151 17.951 11.217 4.318 1.00 19.78 P HETATM 1051 O4P THP A 151 16.757 11.998 4.830 1.00 19.47 O HETATM 1052 O5P THP A 151 18.031 9.755 4.704 1.00 19.53 O HETATM 1053 O6P THP A 151 19.218 11.933 4.649 1.00 19.96 O HETATM 1054 P1 THP A 151 21.206 14.559 0.337 1.00 22.61 P HETATM 1055 O1P THP A 151 22.120 15.149 -0.714 1.00 25.67 O HETATM 1056 O2P THP A 151 21.951 13.495 1.086 1.00 24.50 O HETATM 1057 O3P THP A 151 20.546 15.451 1.362 1.00 24.68 O HETATM 1058 O5' THP A 151 17.828 11.301 2.702 1.00 16.52 O HETATM 1059 C5' THP A 151 18.063 12.560 2.064 1.00 16.17 C HETATM 1060 C4' THP A 151 18.947 12.356 0.846 1.00 18.16 C HETATM 1061 O4' THP A 151 18.556 11.171 0.167 1.00 16.25 O HETATM 1062 C3' THP A 151 18.786 13.519 -0.139 1.00 18.88 C HETATM 1063 O3' THP A 151 20.084 13.941 -0.654 1.00 21.96 O HETATM 1064 C2' THP A 151 17.907 12.979 -1.245 1.00 15.79 C HETATM 1065 C1' THP A 151 18.092 11.462 -1.173 1.00 17.16 C HETATM 1066 N1 THP A 151 16.804 10.873 -1.478 1.00 16.57 N HETATM 1067 C2 THP A 151 16.485 10.622 -2.844 1.00 18.42 C HETATM 1068 O2 THP A 151 17.324 10.876 -3.755 1.00 19.88 O HETATM 1069 N3 THP A 151 15.305 10.095 -3.199 1.00 18.67 N HETATM 1070 C4 THP A 151 14.368 9.796 -2.276 1.00 17.15 C HETATM 1071 O4 THP A 151 13.322 9.299 -2.711 1.00 17.33 O HETATM 1072 C5 THP A 151 14.652 10.044 -0.838 1.00 18.17 C HETATM 1073 C5M THP A 151 13.634 9.762 0.244 1.00 15.18 C HETATM 1074 C6 THP A 151 15.885 10.599 -0.505 1.00 16.71 C HETATM 1075 O HOH A 152 11.017 -10.224 8.725 1.00 19.61 O HETATM 1076 O HOH A 153 6.830 17.922 0.152 1.00 29.75 O HETATM 1077 O HOH A 154 4.600 19.320 2.607 1.00 25.97 O HETATM 1078 O HOH A 155 5.893 -1.977 -7.626 1.00 21.46 O HETATM 1079 O HOH A 156 -1.439 17.379 3.827 1.00 25.20 O HETATM 1080 O HOH A 157 17.262 9.171 7.188 1.00 19.79 O HETATM 1081 O HOH A 158 3.036 -6.749 4.833 1.00 22.62 O HETATM 1082 O HOH A 159 -0.381 2.425 7.284 1.00 36.95 O HETATM 1083 O HOH A 160 19.112 8.893 12.429 1.00 22.85 O HETATM 1084 O HOH A 161 5.286 1.053 16.096 1.00 26.80 O HETATM 1085 O HOH A 162 15.683 9.921 10.017 1.00 21.22 O HETATM 1086 O HOH A 163 19.959 -12.055 -5.570 1.00 26.51 O HETATM 1087 O HOH A 164 9.098 -10.813 6.270 1.00 21.32 O HETATM 1088 O HOH A 165 20.435 14.712 -4.192 1.00 38.83 O HETATM 1089 O HOH A 166 10.886 2.981 -6.209 1.00 16.25 O HETATM 1090 O HOH A 167 20.828 6.162 5.614 1.00 21.01 O HETATM 1091 O HOH A 168 10.005 -10.204 -6.165 1.00 19.57 O HETATM 1092 O HOH A 169 19.259 9.853 -5.421 1.00 29.06 O HETATM 1093 O HOH A 170 -1.444 1.151 5.126 1.00 29.92 O HETATM 1094 O HOH A 171 7.226 -11.231 -5.882 1.00 22.79 O HETATM 1095 O HOH A 172 0.777 -6.495 -4.709 1.00 25.72 O HETATM 1096 O HOH A 173 2.970 13.907 10.026 1.00 14.15 O HETATM 1097 O HOH A 174 9.687 -8.961 10.927 1.00 23.82 O HETATM 1098 O HOH A 175 15.227 14.718 9.071 1.00 41.62 O HETATM 1099 O HOH A 176 24.644 -8.967 -1.310 1.00 42.37 O HETATM 1100 O HOH A 177 16.307 14.684 5.245 1.00 28.84 O HETATM 1101 O HOH A 178 15.186 9.587 -5.809 1.00 21.36 O HETATM 1102 O HOH A 179 19.498 14.395 5.861 1.00 30.13 O HETATM 1103 O HOH A 180 -3.935 8.273 4.503 1.00 19.00 O HETATM 1104 O HOH A 181 14.841 8.356 13.436 1.00 23.65 O HETATM 1105 O HOH A 182 7.590 -11.361 3.112 1.00 20.74 O HETATM 1106 O HOH A 183 16.604 1.522 15.865 1.00 28.42 O HETATM 1107 O HOH A 184 14.286 0.972 11.295 1.00 19.38 O HETATM 1108 O HOH A 185 10.681 9.923 -1.962 1.00 16.44 O HETATM 1109 O HOH A 186 -0.165 0.218 -3.760 1.00 28.39 O HETATM 1110 O HOH A 187 10.435 -4.410 18.711 1.00 34.47 O HETATM 1111 O HOH A 188 18.609 -7.806 -4.173 1.00 27.31 O HETATM 1112 O HOH A 189 16.148 -4.850 14.436 1.00 27.59 O HETATM 1113 O HOH A 190 -2.156 8.530 -3.070 1.00 20.87 O HETATM 1114 O HOH A 191 12.529 13.502 20.956 1.00 41.05 O HETATM 1115 O HOH A 192 10.544 0.399 19.751 1.00 27.83 O HETATM 1116 O HOH A 193 19.205 8.650 9.057 1.00 25.91 O HETATM 1117 O HOH A 194 0.674 13.063 -6.650 1.00 34.58 O HETATM 1118 O HOH A 195 1.290 17.643 3.357 1.00 26.47 O HETATM 1119 O HOH A 196 14.947 -11.926 0.487 1.00 18.01 O HETATM 1120 O HOH A 197 7.735 5.654 19.289 1.00 25.09 O HETATM 1121 O HOH A 198 12.906 17.456 15.153 1.00 34.16 O HETATM 1122 O HOH A 199 21.441 16.892 -2.462 1.00 25.51 O HETATM 1123 O HOH A 200 14.724 5.085 19.678 1.00 39.54 O HETATM 1124 O HOH A 201 -1.414 7.844 -7.204 1.00 33.43 O HETATM 1125 O HOH A 202 14.724 -13.218 2.795 1.00 25.91 O HETATM 1126 O HOH A 203 2.272 14.890 20.946 1.00 35.25 O HETATM 1127 O HOH A 204 4.136 -4.562 13.289 1.00 31.26 O HETATM 1128 O HOH A 205 -1.892 2.222 2.947 1.00 27.21 O HETATM 1129 O HOH A 206 11.828 16.772 7.729 1.00 24.80 O HETATM 1130 O HOH A 207 14.450 2.062 14.006 1.00 32.20 O HETATM 1131 O HOH A 208 16.548 -11.716 7.093 1.00 23.72 O HETATM 1132 O HOH A 209 10.384 1.239 -10.625 1.00 29.66 O HETATM 1133 O HOH A 210 -9.486 10.985 14.554 1.00 35.70 O HETATM 1134 O HOH A 211 18.214 13.672 -4.385 1.00 37.98 O HETATM 1135 O HOH A 212 17.308 2.135 -9.789 1.00 39.72 O HETATM 1136 O HOH A 213 -1.294 0.675 -0.067 1.00 32.29 O HETATM 1137 O HOH A 214 7.743 -13.479 6.777 1.00 41.23 O HETATM 1138 O HOH A 215 13.625 -4.370 -7.957 1.00 39.38 O HETATM 1139 O HOH A 216 -9.402 10.000 11.853 1.00 39.76 O HETATM 1140 O HOH A 217 -2.358 5.727 -2.899 1.00 27.65 O HETATM 1141 O HOH A 218 10.913 15.657 9.650 1.00 36.44 O HETATM 1142 O HOH A 219 -4.351 14.617 0.659 1.00 26.63 O HETATM 1143 O HOH A 220 12.036 9.310 -5.598 1.00 31.54 O HETATM 1144 O HOH A 221 1.980 -3.529 11.128 1.00 32.20 O HETATM 1145 O HOH A 222 -5.085 4.328 5.158 1.00 45.70 O HETATM 1146 O HOH A 223 7.572 -0.577 -10.206 1.00 44.05 O HETATM 1147 O HOH A 224 17.701 14.751 8.213 1.00 30.96 O HETATM 1148 O HOH A 225 -2.005 -2.002 -0.141 1.00 36.26 O HETATM 1149 O HOH A 226 12.776 -13.446 -1.235 1.00 18.60 O HETATM 1150 O HOH A 227 18.671 17.803 -1.697 1.00 27.47 O HETATM 1151 O HOH A 228 10.345 -14.236 -3.881 1.00 22.08 O HETATM 1152 O HOH A 229 23.993 -3.412 1.781 1.00 39.41 O HETATM 1153 O HOH A 230 7.508 -3.582 -6.251 1.00 24.11 O HETATM 1154 O HOH A 231 12.502 -10.849 -2.328 1.00 21.31 O HETATM 1155 O HOH A 232 8.360 18.045 -4.051 1.00 31.25 O HETATM 1156 O HOH A 233 2.440 -7.028 12.999 1.00 29.23 O HETATM 1157 O HOH A 234 5.351 17.999 4.562 1.00 16.18 O HETATM 1158 O HOH A 235 8.821 17.326 -1.591 1.00 18.11 O HETATM 1159 O HOH A 236 6.367 -14.392 -0.629 1.00 20.85 O HETATM 1160 O HOH A 237 9.880 10.327 -4.583 1.00 22.64 O HETATM 1161 O HOH A 238 15.886 18.552 17.643 1.00 36.46 O HETATM 1162 O HOH A 239 -4.620 9.427 -3.839 1.00 33.55 O HETATM 1163 O HOH A 240 -0.906 10.594 -5.102 1.00 27.06 O HETATM 1164 O HOH A 241 -6.895 14.711 6.631 1.00 37.59 O HETATM 1165 O HOH A 242 18.093 5.290 15.199 1.00 25.45 O HETATM 1166 O HOH A 243 4.102 -10.469 -8.530 1.00 35.10 O HETATM 1167 O HOH A 244 0.156 -6.769 2.567 1.00 36.65 O HETATM 1168 O HOH A 245 1.043 -11.276 8.014 1.00 40.81 O HETATM 1169 O HOH A 246 11.600 -11.818 -4.561 1.00 20.62 O HETATM 1170 O HOH A 247 7.399 -13.825 -4.755 1.00 20.19 O HETATM 1171 O HOH A 248 5.416 -14.049 -2.862 1.00 21.34 O HETATM 1172 O HOH A 249 3.984 -11.845 -2.881 1.00 24.67 O HETATM 1173 O HOH A 250 5.662 -12.113 1.423 1.00 30.94 O HETATM 1174 O HOH A 251 21.808 -1.026 0.599 1.00 21.86 O HETATM 1175 O HOH A 252 -8.788 9.391 3.587 1.00 28.52 O HETATM 1176 O HOH A 253 4.833 -10.215 -5.213 1.00 35.91 O HETATM 1177 O HOH A 254 4.981 -10.139 -0.890 1.00 28.16 O HETATM 1178 O HOH A 255 22.453 -5.501 -1.888 1.00 36.59 O HETATM 1179 O HOH A 256 22.167 -1.029 -4.059 1.00 29.43 O HETATM 1180 O HOH A 257 12.596 8.437 -10.266 1.00 30.52 O CONECT 117 1049 CONECT 272 1049 CONECT 277 1049 CONECT 296 1049 CONECT 1049 117 272 277 296 CONECT 1049 1080 1085 CONECT 1050 1051 1052 1053 1058 CONECT 1051 1050 CONECT 1052 1050 CONECT 1053 1050 CONECT 1054 1055 1056 1057 1063 CONECT 1055 1054 CONECT 1056 1054 CONECT 1057 1054 CONECT 1058 1050 1059 CONECT 1059 1058 1060 CONECT 1060 1059 1061 1062 CONECT 1061 1060 1065 CONECT 1062 1060 1063 1064 CONECT 1063 1054 1062 CONECT 1064 1062 1065 CONECT 1065 1061 1064 1066 CONECT 1066 1065 1067 1074 CONECT 1067 1066 1068 1069 CONECT 1068 1067 CONECT 1069 1067 1070 CONECT 1070 1069 1071 1072 CONECT 1071 1070 CONECT 1072 1070 1073 1074 CONECT 1073 1072 CONECT 1074 1066 1072 CONECT 1080 1049 CONECT 1085 1049 MASTER 308 0 2 4 9 0 7 6 1165 1 33 11 END