HEADER HYDROLASE 14-NOV-07 3BDI TITLE CRYSTAL STRUCTURE OF PREDICTED CIB-LIKE HYDROLASE (NP_393672.1) FROM TITLE 2 THERMOPLASMA ACIDOPHILUM AT 1.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN TA0194; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM DSM 1728; SOURCE 3 ORGANISM_TAXID: 273075; SOURCE 4 STRAIN: DSM 1728, AMRC-C165, IFO 15155, JCM 9062; SOURCE 5 ATCC: 25905; SOURCE 6 GENE: NP_393672.1, TA0194; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_393672.1, PREDICTED CIB-LIKE HYDROLASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 3BDI 1 REMARK SEQADV REVDAT 5 24-JUL-19 3BDI 1 REMARK LINK REVDAT 4 25-OCT-17 3BDI 1 REMARK REVDAT 3 13-JUL-11 3BDI 1 VERSN REVDAT 2 24-FEB-09 3BDI 1 VERSN REVDAT 1 27-NOV-07 3BDI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PREDICTED CIB-LIKE HYDROLASE JRNL TITL 2 (NP_393672.1) FROM THERMOPLASMA ACIDOPHILUM AT 1.45 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 12.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.094 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1779 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1211 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2414 ; 1.622 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2953 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 6.481 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;40.007 ;23.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;12.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2038 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 373 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 366 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1255 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 878 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 895 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 154 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.292 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1191 ; 1.847 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 453 ; 0.478 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1795 ; 2.415 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 752 ; 3.791 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 619 ; 4.910 ; 9.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5682 26.7390 13.5602 REMARK 3 T TENSOR REMARK 3 T11: -0.0013 T22: -0.0114 REMARK 3 T33: -0.0160 T12: -0.0016 REMARK 3 T13: 0.0182 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.2299 L22: 0.4640 REMARK 3 L33: 0.1473 L12: 0.1697 REMARK 3 L13: -0.0316 L23: -0.1047 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.0236 S13: -0.0248 REMARK 3 S21: -0.1118 S22: 0.0053 S23: -0.0359 REMARK 3 S31: -0.0081 S32: 0.0068 S33: 0.0161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. POLYETHYLENE GLYCOL MOLECULES FROM THE CRYSTALLIZATION REMARK 3 CONDITIONS WERE MODELED. REMARK 4 REMARK 4 3BDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94939, 0.97939, 0.97953 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.338 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : 0.19400 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 5.0% PEG 3000, 44.0% PEG REMARK 280 400, 0.1M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.69200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.82200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.14600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.82200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.69200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.14600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 ARG A 26 CD NE CZ NH1 NH2 REMARK 470 ARG A 27 CZ NH1 NH2 REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 94 CE NZ REMARK 470 ARG A 100 CD NE CZ NH1 NH2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 146 NH1 NH2 REMARK 470 LYS A 166 CD CE NZ REMARK 470 GLU A 193 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 87 O HOH A 318 2.14 REMARK 500 OE2 GLU A 87 OH TYR A 120 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 178 CD GLU A 178 OE2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 107 -122.66 62.67 REMARK 500 SER A 107 -119.55 62.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388819 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 2. DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS A GLU AT REMARK 999 POSITION 190 INSTEAD OF LYS. THIS IS CONSISTENT WITH THE REMARK 999 OBSERVED ELECTRON DENSITY AT THIS POSITION. DBREF 3BDI A 11 206 UNP Q9HLN3 Q9HLN3_THEAC 2 197 SEQADV 3BDI GLY A 0 UNP Q9HLN3 EXPRESSION TAG SEQADV 3BDI MSE A 1 UNP Q9HLN3 VARIANT SEQADV 3BDI ALA A 2 UNP Q9HLN3 VARIANT SEQADV 3BDI LEU A 3 UNP Q9HLN3 VARIANT SEQADV 3BDI GLN A 4 UNP Q9HLN3 VARIANT SEQADV 3BDI GLU A 5 UNP Q9HLN3 VARIANT SEQADV 3BDI GLU A 6 UNP Q9HLN3 VARIANT SEQADV 3BDI PHE A 7 UNP Q9HLN3 VARIANT SEQADV 3BDI ILE A 8 UNP Q9HLN3 VARIANT SEQADV 3BDI ASP A 9 UNP Q9HLN3 VARIANT SEQADV 3BDI VAL A 10 UNP Q9HLN3 VARIANT SEQADV 3BDI GLU A 190 UNP Q9HLN3 LYS 181 SEE REMARK 999 SEQRES 1 A 207 GLY MSE ALA LEU GLN GLU GLU PHE ILE ASP VAL ASN GLY SEQRES 2 A 207 THR ARG VAL PHE GLN ARG LYS MSE VAL THR ASP SER ASN SEQRES 3 A 207 ARG ARG SER ILE ALA LEU PHE HIS GLY TYR SER PHE THR SEQRES 4 A 207 SER MSE ASP TRP ASP LYS ALA ASP LEU PHE ASN ASN TYR SEQRES 5 A 207 SER LYS ILE GLY TYR ASN VAL TYR ALA PRO ASP TYR PRO SEQRES 6 A 207 GLY PHE GLY ARG SER ALA SER SER GLU LYS TYR GLY ILE SEQRES 7 A 207 ASP ARG GLY ASP LEU LYS HIS ALA ALA GLU PHE ILE ARG SEQRES 8 A 207 ASP TYR LEU LYS ALA ASN GLY VAL ALA ARG SER VAL ILE SEQRES 9 A 207 MSE GLY ALA SER MSE GLY GLY GLY MSE VAL ILE MSE THR SEQRES 10 A 207 THR LEU GLN TYR PRO ASP ILE VAL ASP GLY ILE ILE ALA SEQRES 11 A 207 VAL ALA PRO ALA TRP VAL GLU SER LEU LYS GLY ASP MSE SEQRES 12 A 207 LYS LYS ILE ARG GLN LYS THR LEU LEU VAL TRP GLY SER SEQRES 13 A 207 LYS ASP HIS VAL VAL PRO ILE ALA LEU SER LYS GLU TYR SEQRES 14 A 207 ALA SER ILE ILE SER GLY SER ARG LEU GLU ILE VAL GLU SEQRES 15 A 207 GLY SER GLY HIS PRO VAL TYR ILE GLU LYS PRO GLU GLU SEQRES 16 A 207 PHE VAL ARG ILE THR VAL ASP PHE LEU ARG ASN LEU MODRES 3BDI MSE A 1 MET SELENOMETHIONINE MODRES 3BDI MSE A 20 MET SELENOMETHIONINE MODRES 3BDI MSE A 40 MET SELENOMETHIONINE MODRES 3BDI MSE A 104 MET SELENOMETHIONINE MODRES 3BDI MSE A 108 MET SELENOMETHIONINE MODRES 3BDI MSE A 112 MET SELENOMETHIONINE MODRES 3BDI MSE A 115 MET SELENOMETHIONINE MODRES 3BDI MSE A 142 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 40 8 HET MSE A 104 16 HET MSE A 108 16 HET MSE A 112 8 HET MSE A 115 8 HET MSE A 142 8 HET PEG A 207 7 HET PEG A 208 7 HET PEG A 209 7 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 PEG 3(C4 H10 O3) FORMUL 5 HOH *203(H2 O) HELIX 1 1 THR A 38 ALA A 45 5 8 HELIX 2 2 ASP A 46 LYS A 53 1 8 HELIX 3 3 ASP A 81 ASN A 96 1 16 HELIX 4 4 SER A 107 TYR A 120 1 14 HELIX 5 5 VAL A 135 SER A 137 5 3 HELIX 6 6 LEU A 138 LYS A 143 1 6 HELIX 7 7 PRO A 161 ILE A 172 1 12 HELIX 8 8 PRO A 186 LYS A 191 1 6 HELIX 9 9 LYS A 191 ASN A 205 1 15 SHEET 1 A 8 GLN A 4 VAL A 10 0 SHEET 2 A 8 THR A 13 MSE A 20 -1 O GLN A 17 N GLU A 6 SHEET 3 A 8 TYR A 56 PRO A 61 -1 O VAL A 58 N MSE A 20 SHEET 4 A 8 ARG A 27 PHE A 32 1 N ARG A 27 O ASN A 57 SHEET 5 A 8 SER A 101 ALA A 106 1 O VAL A 102 N SER A 28 SHEET 6 A 8 VAL A 124 VAL A 130 1 O VAL A 130 N GLY A 105 SHEET 7 A 8 THR A 149 GLY A 154 1 O LEU A 150 N ALA A 129 SHEET 8 A 8 ARG A 176 VAL A 180 1 O ARG A 176 N LEU A 151 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C LYS A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N VAL A 21 1555 1555 1.32 LINK C SER A 39 N MSE A 40 1555 1555 1.34 LINK C MSE A 40 N ASP A 41 1555 1555 1.33 LINK C ILE A 103 N AMSE A 104 1555 1555 1.33 LINK C ILE A 103 N BMSE A 104 1555 1555 1.33 LINK C AMSE A 104 N GLY A 105 1555 1555 1.33 LINK C BMSE A 104 N GLY A 105 1555 1555 1.33 LINK C SER A 107 N AMSE A 108 1555 1555 1.33 LINK C SER A 107 N BMSE A 108 1555 1555 1.34 LINK C AMSE A 108 N GLY A 109 1555 1555 1.34 LINK C BMSE A 108 N GLY A 109 1555 1555 1.33 LINK C GLY A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N VAL A 113 1555 1555 1.34 LINK C ILE A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N THR A 116 1555 1555 1.32 LINK C ASP A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N LYS A 143 1555 1555 1.35 SITE 1 AC1 2 ASN A 11 LYS A 74 SITE 1 AC2 2 TYR A 35 GLY A 65 SITE 1 AC3 6 GLY A 67 ARG A 68 GLU A 190 LYS A 191 SITE 2 AC3 6 HOH A 366 HOH A 397 CRYST1 43.384 46.292 101.644 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009838 0.00000