HEADER HYDROLASE 15-NOV-07 3BDV TITLE CRYSTAL STRUCTURE OF A PUTATIVE YDEN-LIKE HYDROLASE (ECA3091) FROM TITLE 2 PECTOBACTERIUM ATROSEPTICUM SCRI1043 AT 1.66 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN DUF1234; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM SCRI1043; SOURCE 3 ORGANISM_TAXID: 218491; SOURCE 4 STRAIN: SCRI 1043; SOURCE 5 ATCC: BAA-672; SOURCE 6 GENE: YP_051181.1, ECA3091; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DUF1234 FAMILY PROTEIN, ALPHA/BETA-HYDROLASES FOLD, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 20-NOV-24 3BDV 1 REMARK REVDAT 7 25-JAN-23 3BDV 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3BDV 1 REMARK LINK REVDAT 5 25-OCT-17 3BDV 1 REMARK REVDAT 4 13-JUL-11 3BDV 1 VERSN REVDAT 3 23-MAR-11 3BDV 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BDV 1 VERSN REVDAT 1 27-NOV-07 3BDV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF YDEN-LIKE PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (DUF1234) (YP_051181.1) FROM ERWINIA CAROTOVORA SUBSP. JRNL TITL 3 ATROSEPTICA SCRI1043 AT 1.66 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2112 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2909 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3246 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2197 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4459 ; 1.485 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5341 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 5.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;36.857 ;23.416 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;13.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.559 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3686 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 694 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 679 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2414 ; 0.214 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1572 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1712 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.092 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.089 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2021 ; 1.962 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 779 ; 0.657 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3179 ; 2.698 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1441 ; 4.183 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1254 ; 5.683 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 188 4 REMARK 3 1 B 5 B 188 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2351 ; 0.350 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2351 ; 1.150 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2477 77.5532 33.5788 REMARK 3 T TENSOR REMARK 3 T11: -0.0379 T22: -0.0120 REMARK 3 T33: -0.0521 T12: 0.0261 REMARK 3 T13: -0.0059 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7355 L22: 1.5386 REMARK 3 L33: 0.4078 L12: 0.0911 REMARK 3 L13: -0.1064 L23: -0.4348 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0179 S13: 0.0278 REMARK 3 S21: 0.2141 S22: 0.0611 S23: 0.0834 REMARK 3 S31: -0.1029 S32: -0.0433 S33: -0.0626 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8661 89.5320 8.9302 REMARK 3 T TENSOR REMARK 3 T11: -0.0371 T22: -0.0122 REMARK 3 T33: -0.0337 T12: -0.0142 REMARK 3 T13: -0.0081 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.5454 L22: 2.6590 REMARK 3 L33: 0.9486 L12: 0.3481 REMARK 3 L13: 0.0789 L23: 0.1095 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 0.0502 S13: -0.0487 REMARK 3 S21: -0.3404 S22: 0.0773 S23: -0.0657 REMARK 3 S31: 0.0548 S32: -0.0024 S33: 0.0060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR REMARK 3 THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4. CALCIUM IONS, CHLORIDE IONS AND ETHYLENE GLYCOL MODELED REMARK 3 ARE PRESENT IN CRYSTALLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 3BDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 0.97953, 0.97939 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 42.563 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M CA(OAC)2, 10.0% PEG REMARK 280 8000, 0.1M IMIDAZOLE PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.82750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.04750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.65100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.04750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.82750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.65100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ASN B 189 REMARK 465 ARG B 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLN A 54 CD OE1 NE2 REMARK 470 THR B 4 OG1 CG2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 ARG B 26 NE CZ NH1 NH2 REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 GLN B 54 CG CD OE1 NE2 REMARK 470 GLU B 96 CD OE1 OE2 REMARK 470 GLN B 148 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 170.27 73.14 REMARK 500 SER A 81 -119.99 58.12 REMARK 500 ASP B 27 169.44 67.69 REMARK 500 SER B 81 -118.22 57.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 191 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 46 O REMARK 620 2 GLU A 67 OE1 83.1 REMARK 620 3 GLU A 67 OE2 87.5 50.1 REMARK 620 4 HOH A 239 O 83.5 121.0 72.2 REMARK 620 5 HOH A 268 O 164.2 91.1 77.6 87.0 REMARK 620 6 HOH A 342 O 115.8 84.4 127.0 151.0 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 191 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 185 O REMARK 620 2 EDO A 195 O1 80.9 REMARK 620 3 EDO A 195 O2 88.8 75.3 REMARK 620 4 HOH A 242 O 92.5 77.7 152.4 REMARK 620 5 ASP B 151 OD2 109.2 137.1 63.7 140.2 REMARK 620 6 HOH B 248 O 75.8 139.9 135.2 71.3 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 192 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A 194 O2 REMARK 620 2 EDO A 194 O1 63.4 REMARK 620 3 HOH A 265 O 165.5 131.1 REMARK 620 4 HOH A 285 O 126.6 69.3 66.4 REMARK 620 5 HOH A 313 O 81.4 141.7 84.7 130.0 REMARK 620 6 HOH A 367 O 75.3 63.5 110.1 62.1 94.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 196 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379345 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BDV A 1 190 UNP Q6D2K4 Q6D2K4_ERWCT 1 190 DBREF 3BDV B 1 190 UNP Q6D2K4 Q6D2K4_ERWCT 1 190 SEQADV 3BDV GLY A 0 UNP Q6D2K4 EXPRESSION TAG SEQADV 3BDV GLY B 0 UNP Q6D2K4 EXPRESSION TAG SEQRES 1 A 191 GLY MSE GLN THR THR GLU ILE ASP LEU ARG LEU THR GLU SEQRES 2 A 191 VAL SER GLN GLN LEU THR MSE VAL LEU VAL PRO GLY LEU SEQRES 3 A 191 ARG ASP SER ASP ASP GLU HIS TRP GLN SER HIS TRP GLU SEQRES 4 A 191 ARG ARG PHE PRO HIS TRP GLN ARG ILE ARG GLN ARG GLU SEQRES 5 A 191 TRP TYR GLN ALA ASP LEU ASP ARG TRP VAL LEU ALA ILE SEQRES 6 A 191 ARG ARG GLU LEU SER VAL CYS THR GLN PRO VAL ILE LEU SEQRES 7 A 191 ILE GLY HIS SER PHE GLY ALA LEU ALA ALA CYS HIS VAL SEQRES 8 A 191 VAL GLN GLN GLY GLN GLU GLY ILE ALA GLY VAL MSE LEU SEQRES 9 A 191 VAL ALA PRO ALA GLU PRO MSE ARG PHE GLU ILE ASP ASP SEQRES 10 A 191 ARG ILE GLN ALA SER PRO LEU SER VAL PRO THR LEU THR SEQRES 11 A 191 PHE ALA SER HIS ASN ASP PRO LEU MSE SER PHE THR ARG SEQRES 12 A 191 ALA GLN TYR TRP ALA GLN ALA TRP ASP SER GLU LEU VAL SEQRES 13 A 191 ASP VAL GLY GLU ALA GLY HIS ILE ASN ALA GLU ALA GLY SEQRES 14 A 191 PHE GLY PRO TRP GLU TYR GLY LEU LYS ARG LEU ALA GLU SEQRES 15 A 191 PHE SER GLU ILE LEU ILE PRO ASN ARG SEQRES 1 B 191 GLY MSE GLN THR THR GLU ILE ASP LEU ARG LEU THR GLU SEQRES 2 B 191 VAL SER GLN GLN LEU THR MSE VAL LEU VAL PRO GLY LEU SEQRES 3 B 191 ARG ASP SER ASP ASP GLU HIS TRP GLN SER HIS TRP GLU SEQRES 4 B 191 ARG ARG PHE PRO HIS TRP GLN ARG ILE ARG GLN ARG GLU SEQRES 5 B 191 TRP TYR GLN ALA ASP LEU ASP ARG TRP VAL LEU ALA ILE SEQRES 6 B 191 ARG ARG GLU LEU SER VAL CYS THR GLN PRO VAL ILE LEU SEQRES 7 B 191 ILE GLY HIS SER PHE GLY ALA LEU ALA ALA CYS HIS VAL SEQRES 8 B 191 VAL GLN GLN GLY GLN GLU GLY ILE ALA GLY VAL MSE LEU SEQRES 9 B 191 VAL ALA PRO ALA GLU PRO MSE ARG PHE GLU ILE ASP ASP SEQRES 10 B 191 ARG ILE GLN ALA SER PRO LEU SER VAL PRO THR LEU THR SEQRES 11 B 191 PHE ALA SER HIS ASN ASP PRO LEU MSE SER PHE THR ARG SEQRES 12 B 191 ALA GLN TYR TRP ALA GLN ALA TRP ASP SER GLU LEU VAL SEQRES 13 B 191 ASP VAL GLY GLU ALA GLY HIS ILE ASN ALA GLU ALA GLY SEQRES 14 B 191 PHE GLY PRO TRP GLU TYR GLY LEU LYS ARG LEU ALA GLU SEQRES 15 B 191 PHE SER GLU ILE LEU ILE PRO ASN ARG MODRES 3BDV MSE A 1 MET SELENOMETHIONINE MODRES 3BDV MSE A 19 MET SELENOMETHIONINE MODRES 3BDV MSE A 102 MET SELENOMETHIONINE MODRES 3BDV MSE A 110 MET SELENOMETHIONINE MODRES 3BDV MSE A 138 MET SELENOMETHIONINE MODRES 3BDV MSE B 19 MET SELENOMETHIONINE MODRES 3BDV MSE B 102 MET SELENOMETHIONINE MODRES 3BDV MSE B 110 MET SELENOMETHIONINE MODRES 3BDV MSE B 138 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 102 8 HET MSE A 110 8 HET MSE A 138 8 HET MSE B 19 13 HET MSE B 102 13 HET MSE B 110 13 HET MSE B 138 13 HET CA A 191 1 HET CA A 192 1 HET CL A 193 1 HET EDO A 194 4 HET EDO A 195 4 HET EDO A 196 4 HET CA B 191 1 HET CL B 192 1 HET EDO B 193 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 CA 3(CA 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 12 HOH *295(H2 O) HELIX 1 1 GLN A 2 GLN A 15 1 14 HELIX 2 2 HIS A 32 PHE A 41 1 10 HELIX 3 3 ASP A 56 VAL A 70 1 15 HELIX 4 4 SER A 81 GLN A 93 1 13 HELIX 5 5 GLU A 108 GLU A 113 5 6 HELIX 6 6 SER A 139 ASP A 151 1 13 HELIX 7 7 ASN A 164 GLY A 168 5 5 HELIX 8 8 TRP A 172 ILE A 185 1 14 HELIX 9 9 THR B 4 GLN B 15 1 12 HELIX 10 10 HIS B 32 PHE B 41 1 10 HELIX 11 11 ASP B 56 VAL B 70 1 15 HELIX 12 12 SER B 81 GLN B 93 1 13 HELIX 13 13 GLU B 108 GLU B 113 5 6 HELIX 14 14 SER B 139 ASP B 151 1 13 HELIX 15 15 ASN B 164 GLY B 168 5 5 HELIX 16 16 TRP B 172 ILE B 185 1 14 SHEET 1 A 6 GLN A 45 ARG A 46 0 SHEET 2 A 6 THR A 18 VAL A 22 1 N MSE A 19 O GLN A 45 SHEET 3 A 6 VAL A 75 HIS A 80 1 O ILE A 78 N VAL A 22 SHEET 4 A 6 ILE A 98 VAL A 104 1 O MSE A 102 N LEU A 77 SHEET 5 A 6 THR A 127 ALA A 131 1 O LEU A 128 N LEU A 103 SHEET 6 A 6 GLU A 153 ASP A 156 1 O VAL A 155 N THR A 129 SHEET 1 B 6 GLN B 45 ARG B 46 0 SHEET 2 B 6 THR B 18 VAL B 22 1 N MSE B 19 O GLN B 45 SHEET 3 B 6 VAL B 75 HIS B 80 1 O ILE B 78 N VAL B 22 SHEET 4 B 6 ILE B 98 VAL B 104 1 O MSE B 102 N LEU B 77 SHEET 5 B 6 THR B 127 ALA B 131 1 O LEU B 128 N LEU B 103 SHEET 6 B 6 GLU B 153 ASP B 156 1 O VAL B 155 N THR B 129 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLN A 2 1555 1555 1.34 LINK C THR A 18 N MSE A 19 1555 1555 1.32 LINK C MSE A 19 N VAL A 20 1555 1555 1.33 LINK C VAL A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N LEU A 103 1555 1555 1.33 LINK C PRO A 109 N MSE A 110 1555 1555 1.31 LINK C MSE A 110 N ARG A 111 1555 1555 1.35 LINK C LEU A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N SER A 139 1555 1555 1.33 LINK C THR B 18 N MSE B 19 1555 1555 1.33 LINK C MSE B 19 N VAL B 20 1555 1555 1.34 LINK C VAL B 101 N MSE B 102 1555 1555 1.32 LINK C MSE B 102 N LEU B 103 1555 1555 1.32 LINK C PRO B 109 N MSE B 110 1555 1555 1.34 LINK C MSE B 110 N ARG B 111 1555 1555 1.33 LINK C LEU B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N SER B 139 1555 1555 1.34 LINK O ARG A 46 CA CA A 191 1555 1555 2.44 LINK OE1 GLU A 67 CA CA A 191 1555 1555 2.53 LINK OE2 GLU A 67 CA CA A 191 1555 1555 2.56 LINK O ILE A 185 CA CA B 191 1555 1555 2.37 LINK CA CA A 191 O HOH A 239 1555 1555 2.37 LINK CA CA A 191 O HOH A 268 1555 1555 2.44 LINK CA CA A 191 O HOH A 342 1555 1555 2.27 LINK CA CA A 192 O2 EDO A 194 1555 1555 2.51 LINK CA CA A 192 O1 EDO A 194 1555 1555 2.52 LINK CA CA A 192 O HOH A 265 1555 1555 2.40 LINK CA CA A 192 O HOH A 285 1555 1555 2.34 LINK CA CA A 192 O HOH A 313 1555 1555 2.32 LINK CA CA A 192 O BHOH A 367 1555 1555 2.88 LINK O1 EDO A 195 CA CA B 191 1555 1555 2.41 LINK O2 EDO A 195 CA CA B 191 1555 1555 2.24 LINK O HOH A 242 CA CA B 191 1555 1555 2.39 LINK OD2 ASP B 151 CA CA B 191 1555 1555 2.47 LINK CA CA B 191 O HOH B 248 1555 1555 2.46 CISPEP 1 PHE A 169 GLY A 170 0 10.63 CISPEP 2 PHE B 169 GLY B 170 0 15.04 SITE 1 AC1 6 ARG A 46 GLU A 67 HOH A 239 HOH A 268 SITE 2 AC1 6 HOH A 342 ASP B 58 SITE 1 AC2 5 EDO A 194 HOH A 265 HOH A 285 HOH A 313 SITE 2 AC2 5 HOH A 367 SITE 1 AC3 6 ILE A 185 EDO A 195 HOH A 242 ASP B 151 SITE 2 AC3 6 GLU B 166 HOH B 248 SITE 1 AC4 5 LEU A 25 SER A 81 PHE A 82 PHE A 112 SITE 2 AC4 5 HOH A 229 SITE 1 AC5 4 LEU B 25 SER B 81 PHE B 82 HOH B 221 SITE 1 AC6 7 GLU A 113 ASP A 115 ASP A 116 ARG A 190 SITE 2 AC6 7 CA A 192 HOH A 285 HOH A 367 SITE 1 AC7 3 ARG B 111 PHE B 112 LEU B 137 SITE 1 AC8 8 ILE A 185 HOH A 242 ASP B 151 ALA B 165 SITE 2 AC8 8 GLU B 166 ALA B 167 GLY B 168 CA B 191 SITE 1 AC9 7 GLN A 2 GLU A 5 ILE A 6 ARG A 9 SITE 2 AC9 7 LYS A 177 HOH A 212 ASP B 156 CRYST1 35.655 93.302 104.095 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009607 0.00000 CONECT 3 5 CONECT 5 3 6 CONECT 6 5 7 9 CONECT 7 6 8 13 CONECT 8 7 CONECT 9 6 10 CONECT 10 9 11 CONECT 11 10 12 CONECT 12 11 CONECT 13 7 CONECT 145 150 CONECT 150 145 151 CONECT 151 150 152 154 CONECT 152 151 153 158 CONECT 153 152 CONECT 154 151 155 CONECT 155 154 156 CONECT 156 155 157 CONECT 157 156 CONECT 158 152 CONECT 408 3127 CONECT 603 3127 CONECT 604 3127 CONECT 847 855 CONECT 855 847 856 CONECT 856 855 857 859 CONECT 857 856 858 863 CONECT 858 857 CONECT 859 856 860 CONECT 860 859 861 CONECT 861 860 862 CONECT 862 861 CONECT 863 857 CONECT 906 911 CONECT 911 906 912 CONECT 912 911 913 915 CONECT 913 912 914 919 CONECT 914 913 CONECT 915 912 916 CONECT 916 915 917 CONECT 917 916 918 CONECT 918 917 CONECT 919 913 CONECT 1127 1133 CONECT 1133 1127 1134 CONECT 1134 1133 1135 1137 CONECT 1135 1134 1136 1141 CONECT 1136 1135 CONECT 1137 1134 1138 CONECT 1138 1137 1139 CONECT 1139 1138 1140 CONECT 1140 1139 CONECT 1141 1135 CONECT 1523 3142 CONECT 1687 1692 CONECT 1692 1687 1693 1694 CONECT 1693 1692 1695 1697 CONECT 1694 1692 1695 1698 CONECT 1695 1693 1694 1696 1705 CONECT 1696 1695 CONECT 1697 1693 1699 CONECT 1698 1694 1700 CONECT 1699 1697 1701 CONECT 1700 1698 1702 CONECT 1701 1699 1703 CONECT 1702 1700 1704 CONECT 1703 1701 CONECT 1704 1702 CONECT 1705 1695 CONECT 2400 2408 CONECT 2408 2400 2409 2410 CONECT 2409 2408 2411 2413 CONECT 2410 2408 2411 2414 CONECT 2411 2409 2410 2412 2421 CONECT 2412 2411 CONECT 2413 2409 2415 CONECT 2414 2410 2416 CONECT 2415 2413 2417 CONECT 2416 2414 2418 CONECT 2417 2415 2419 CONECT 2418 2416 2420 CONECT 2419 2417 CONECT 2420 2418 CONECT 2421 2411 CONECT 2464 2469 CONECT 2469 2464 2470 2471 CONECT 2470 2469 2472 2474 CONECT 2471 2469 2472 2475 CONECT 2472 2470 2471 2473 2482 CONECT 2473 2472 CONECT 2474 2470 2476 CONECT 2475 2471 2477 CONECT 2476 2474 2478 CONECT 2477 2475 2479 CONECT 2478 2476 2480 CONECT 2479 2477 2481 CONECT 2480 2478 CONECT 2481 2479 CONECT 2482 2472 CONECT 2700 2706 CONECT 2706 2700 2707 2708 CONECT 2707 2706 2709 2711 CONECT 2708 2706 2709 2712 CONECT 2709 2707 2708 2710 2719 CONECT 2710 2709 CONECT 2711 2707 2713 CONECT 2712 2708 2714 CONECT 2713 2711 2715 CONECT 2714 2712 2716 CONECT 2715 2713 2717 CONECT 2716 2714 2718 CONECT 2717 2715 CONECT 2718 2716 CONECT 2719 2709 CONECT 2836 3142 CONECT 3127 408 603 604 3190 CONECT 3127 3219 3293 CONECT 3128 3131 3133 3216 3236 CONECT 3128 3264 3320 CONECT 3130 3131 3132 CONECT 3131 3128 3130 CONECT 3132 3130 3133 CONECT 3133 3128 3132 CONECT 3134 3135 3136 CONECT 3135 3134 3142 CONECT 3136 3134 3137 CONECT 3137 3136 3142 CONECT 3138 3139 3140 CONECT 3139 3138 CONECT 3140 3138 3141 CONECT 3141 3140 CONECT 3142 1523 2836 3135 3137 CONECT 3142 3193 3377 CONECT 3144 3145 3146 CONECT 3145 3144 CONECT 3146 3144 3147 CONECT 3147 3146 CONECT 3190 3127 CONECT 3193 3142 CONECT 3216 3128 CONECT 3219 3127 CONECT 3236 3128 CONECT 3264 3128 CONECT 3293 3127 CONECT 3320 3128 CONECT 3377 3142 MASTER 433 0 18 16 12 0 16 6 3313 2 146 30 END