data_3BE3 # _entry.id 3BE3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BE3 RCSB RCSB045404 WWPDB D_1000045404 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10206d _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BE3 _pdbx_database_status.recvd_initial_deposition_date 2007-11-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tyagi, R.' 1 ? 'Eswaramoorthy, S.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 'Swaminathan, S.' 4 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 5 ? # _citation.id primary _citation.title 'Crystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tyagi, R.' 1 ? primary 'Eswaramoorthy, S.' 2 ? primary 'Burley, S.K.' 3 0000-0002-2487-9713 primary 'Swaminathan, S.' 4 ? # _cell.entry_id 3BE3 _cell.length_a 84.728 _cell.length_b 84.728 _cell.length_c 44.582 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BE3 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 10521.347 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 135 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLA(MSE)QDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAGLP(MSE)STRLLRIWNETVDTGAGP QPRFAYVGHVTPEQGEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLAMQDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAGLPMSTRLLRIWNETVDTGAGPQPRFAYVGHVTP EQGEGHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier NYSGXRC-10206d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 ALA n 1 5 MSE n 1 6 GLN n 1 7 ASP n 1 8 PHE n 1 9 ARG n 1 10 PRO n 1 11 GLY n 1 12 VAL n 1 13 TYR n 1 14 ARG n 1 15 HIS n 1 16 TYR n 1 17 LYS n 1 18 GLY n 1 19 ASP n 1 20 HIS n 1 21 TYR n 1 22 LEU n 1 23 ALA n 1 24 LEU n 1 25 GLY n 1 26 LEU n 1 27 ALA n 1 28 ARG n 1 29 ALA n 1 30 ASP n 1 31 GLU n 1 32 THR n 1 33 ASP n 1 34 GLU n 1 35 VAL n 1 36 VAL n 1 37 VAL n 1 38 VAL n 1 39 TYR n 1 40 THR n 1 41 ARG n 1 42 LEU n 1 43 TYR n 1 44 ALA n 1 45 ARG n 1 46 ALA n 1 47 GLY n 1 48 LEU n 1 49 PRO n 1 50 MSE n 1 51 SER n 1 52 THR n 1 53 ARG n 1 54 LEU n 1 55 LEU n 1 56 ARG n 1 57 ILE n 1 58 TRP n 1 59 ASN n 1 60 GLU n 1 61 THR n 1 62 VAL n 1 63 ASP n 1 64 THR n 1 65 GLY n 1 66 ALA n 1 67 GLY n 1 68 PRO n 1 69 GLN n 1 70 PRO n 1 71 ARG n 1 72 PHE n 1 73 ALA n 1 74 TYR n 1 75 VAL n 1 76 GLY n 1 77 HIS n 1 78 VAL n 1 79 THR n 1 80 PRO n 1 81 GLU n 1 82 GLN n 1 83 GLY n 1 84 GLU n 1 85 GLY n 1 86 HIS n 1 87 HIS n 1 88 HIS n 1 89 HIS n 1 90 HIS n 1 91 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bordetella _entity_src_gen.pdbx_gene_src_gene '81430067, BB4950' _entity_src_gen.gene_src_species 'Bordetella bronchiseptica' _entity_src_gen.gene_src_strain 'RB50, NCTC 13252' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella bronchiseptica RB50' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 257310 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-588 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSGX3-BC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7WDN8_BORBR _struct_ref.pdbx_db_accession Q7WDN8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AMQDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAGLPMSTRLLRIWNETVDTGAGPQPRFAYVGHVTPEQG ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BE3 A 4 ? 83 ? Q7WDN8 2 ? 81 ? 4 83 2 1 3BE3 B 4 ? 83 ? Q7WDN8 2 ? 81 ? 4 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BE3 MSE A 1 ? UNP Q7WDN8 ? ? 'expression tag' 1 1 1 3BE3 SER A 2 ? UNP Q7WDN8 ? ? 'expression tag' 2 2 1 3BE3 LEU A 3 ? UNP Q7WDN8 ? ? 'expression tag' 3 3 1 3BE3 GLU A 84 ? UNP Q7WDN8 ? ? 'expression tag' 84 4 1 3BE3 GLY A 85 ? UNP Q7WDN8 ? ? 'expression tag' 85 5 1 3BE3 HIS A 86 ? UNP Q7WDN8 ? ? 'expression tag' 86 6 1 3BE3 HIS A 87 ? UNP Q7WDN8 ? ? 'expression tag' 87 7 1 3BE3 HIS A 88 ? UNP Q7WDN8 ? ? 'expression tag' 88 8 1 3BE3 HIS A 89 ? UNP Q7WDN8 ? ? 'expression tag' 89 9 1 3BE3 HIS A 90 ? UNP Q7WDN8 ? ? 'expression tag' 90 10 1 3BE3 HIS A 91 ? UNP Q7WDN8 ? ? 'expression tag' 91 11 2 3BE3 MSE B 1 ? UNP Q7WDN8 ? ? 'expression tag' 1 12 2 3BE3 SER B 2 ? UNP Q7WDN8 ? ? 'expression tag' 2 13 2 3BE3 LEU B 3 ? UNP Q7WDN8 ? ? 'expression tag' 3 14 2 3BE3 GLU B 84 ? UNP Q7WDN8 ? ? 'expression tag' 84 15 2 3BE3 GLY B 85 ? UNP Q7WDN8 ? ? 'expression tag' 85 16 2 3BE3 HIS B 86 ? UNP Q7WDN8 ? ? 'expression tag' 86 17 2 3BE3 HIS B 87 ? UNP Q7WDN8 ? ? 'expression tag' 87 18 2 3BE3 HIS B 88 ? UNP Q7WDN8 ? ? 'expression tag' 88 19 2 3BE3 HIS B 89 ? UNP Q7WDN8 ? ? 'expression tag' 89 20 2 3BE3 HIS B 90 ? UNP Q7WDN8 ? ? 'expression tag' 90 21 2 3BE3 HIS B 91 ? UNP Q7WDN8 ? ? 'expression tag' 91 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BE3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 43.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.5, 2.0 M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-11-13 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9790 # _reflns.entry_id 3BE3 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.04 _reflns.number_obs 12048 _reflns.number_all 12048 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.2 _reflns.B_iso_Wilson_estimate 9.5 _reflns.pdbx_redundancy 21.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.04 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.304 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 19.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1185 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BE3 _refine.ls_number_reflns_obs 11806 _refine.ls_number_reflns_all 11806 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 130435.42 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.58 _refine.ls_d_res_high 2.04 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_all 0.201 _refine.ls_R_factor_R_work 0.201 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.0 _refine.ls_number_reflns_R_free 359 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 21.4 _refine.aniso_B[1][1] 0.14 _refine.aniso_B[2][2] 0.14 _refine.aniso_B[3][3] -0.28 _refine.aniso_B[1][2] 0.12 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37786 _refine.solvent_model_param_bsol 39.7621 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3BE3 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1243 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 1388 _refine_hist.d_res_high 2.04 _refine_hist.d_res_low 44.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.33 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.14 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.27 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.27 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.04 _refine_ls_shell.d_res_low 2.17 _refine_ls_shell.number_reflns_R_work 1855 _refine_ls_shell.R_factor_R_work 0.196 _refine_ls_shell.percent_reflns_obs 96.8 _refine_ls_shell.R_factor_R_free 0.198 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free 2.5 _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 ion.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3BE3 _struct.title 'Crystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BE3 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;10206d, pfam DUF1653, PSI-2, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 55 ? ASN A 59 ? LEU A 55 ASN A 59 1 ? 5 HELX_P HELX_P2 2 ALA B 4 ? PHE B 8 ? ALA B 4 PHE B 8 5 ? 5 HELX_P HELX_P3 3 LEU B 55 ? ASN B 59 ? LEU B 55 ASN B 59 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 5 C ? ? ? 1_555 A GLN 6 N ? ? A MSE 5 A GLN 6 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A PRO 49 C ? ? ? 1_555 A MSE 50 N ? ? A PRO 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A MSE 50 C ? ? ? 1_555 A SER 51 N ? ? A MSE 50 A SER 51 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? B ALA 4 C ? ? ? 1_555 B MSE 5 N ? ? B ALA 4 B MSE 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? B MSE 5 C ? ? ? 1_555 B GLN 6 N ? ? B MSE 5 B GLN 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? B PRO 49 C ? ? ? 1_555 B MSE 50 N ? ? B PRO 49 B MSE 50 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? B MSE 50 C ? ? ? 1_555 B SER 51 N ? ? B MSE 50 B SER 51 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 5 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 50 ? LEU A 54 ? MSE A 50 LEU A 54 A 2 GLU A 34 ? ARG A 41 ? GLU A 34 ARG A 41 A 3 HIS A 20 ? ALA A 29 ? HIS A 20 ALA A 29 A 4 GLY A 11 ? HIS A 15 ? GLY A 11 HIS A 15 A 5 PHE A 72 ? GLY A 76 ? PHE A 72 GLY A 76 B 1 THR A 61 ? THR A 64 ? THR A 61 THR A 64 B 2 GLY A 67 ? PRO A 70 ? GLY A 67 PRO A 70 C 1 MSE B 50 ? LEU B 54 ? MSE B 50 LEU B 54 C 2 VAL B 35 ? ARG B 41 ? VAL B 35 ARG B 41 C 3 HIS B 20 ? ARG B 28 ? HIS B 20 ARG B 28 C 4 GLY B 11 ? HIS B 15 ? GLY B 11 HIS B 15 C 5 PHE B 72 ? GLY B 76 ? PHE B 72 GLY B 76 D 1 THR B 61 ? THR B 64 ? THR B 61 THR B 64 D 2 GLY B 67 ? PRO B 70 ? GLY B 67 PRO B 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 53 ? O ARG A 53 N VAL A 37 ? N VAL A 37 A 2 3 O THR A 40 ? O THR A 40 N LEU A 22 ? N LEU A 22 A 3 4 O ALA A 23 ? O ALA A 23 N GLY A 11 ? N GLY A 11 A 4 5 N ARG A 14 ? N ARG A 14 O ALA A 73 ? O ALA A 73 B 1 2 N VAL A 62 ? N VAL A 62 O GLN A 69 ? O GLN A 69 C 1 2 O ARG B 53 ? O ARG B 53 N VAL B 37 ? N VAL B 37 C 2 3 O VAL B 36 ? O VAL B 36 N ALA B 27 ? N ALA B 27 C 3 4 O ALA B 23 ? O ALA B 23 N GLY B 11 ? N GLY B 11 C 4 5 N VAL B 12 ? N VAL B 12 O GLY B 76 ? O GLY B 76 D 1 2 N VAL B 62 ? N VAL B 62 O GLN B 69 ? O GLN B 69 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 200 ? 4 'BINDING SITE FOR RESIDUE SO4 A 200' AC2 Software B SO4 200 ? 4 'BINDING SITE FOR RESIDUE SO4 B 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 15 ? HIS A 15 . ? 1_555 ? 2 AC1 4 TYR A 16 ? TYR A 16 . ? 1_555 ? 3 AC1 4 ARG A 53 ? ARG A 53 . ? 1_555 ? 4 AC1 4 ARG A 71 ? ARG A 71 . ? 1_555 ? 5 AC2 4 HIS B 15 ? HIS B 15 . ? 1_555 ? 6 AC2 4 TYR B 16 ? TYR B 16 . ? 1_555 ? 7 AC2 4 ARG B 53 ? ARG B 53 . ? 1_555 ? 8 AC2 4 ARG B 71 ? ARG B 71 . ? 1_555 ? # _database_PDB_matrix.entry_id 3BE3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BE3 _atom_sites.fract_transf_matrix[1][1] 0.011802 _atom_sites.fract_transf_matrix[1][2] 0.006814 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013628 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022431 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 MSE 5 5 5 MSE MSE A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 MSE 50 50 50 MSE MSE A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLN 82 82 ? ? ? A . n A 1 83 GLY 83 83 ? ? ? A . n A 1 84 GLU 84 84 ? ? ? A . n A 1 85 GLY 85 85 ? ? ? A . n A 1 86 HIS 86 86 ? ? ? A . n A 1 87 HIS 87 87 ? ? ? A . n A 1 88 HIS 88 88 ? ? ? A . n A 1 89 HIS 89 89 ? ? ? A . n A 1 90 HIS 90 90 ? ? ? A . n A 1 91 HIS 91 91 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 LEU 3 3 ? ? ? B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 MSE 5 5 5 MSE MSE B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 TYR 13 13 13 TYR TYR B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 HIS 15 15 15 HIS HIS B . n B 1 16 TYR 16 16 16 TYR TYR B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 HIS 20 20 20 HIS HIS B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 ASP 33 33 33 ASP ASP B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 TYR 39 39 39 TYR TYR B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 TYR 43 43 43 TYR TYR B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 PRO 49 49 49 PRO PRO B . n B 1 50 MSE 50 50 50 MSE MSE B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 THR 52 52 52 THR THR B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 ILE 57 57 57 ILE ILE B . n B 1 58 TRP 58 58 58 TRP TRP B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 THR 61 61 61 THR THR B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 PRO 68 68 68 PRO PRO B . n B 1 69 GLN 69 69 69 GLN GLN B . n B 1 70 PRO 70 70 70 PRO PRO B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 PHE 72 72 72 PHE PHE B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 TYR 74 74 74 TYR TYR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 HIS 77 77 77 HIS HIS B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 PRO 80 80 80 PRO PRO B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 GLN 82 82 ? ? ? B . n B 1 83 GLY 83 83 ? ? ? B . n B 1 84 GLU 84 84 ? ? ? B . n B 1 85 GLY 85 85 ? ? ? B . n B 1 86 HIS 86 86 ? ? ? B . n B 1 87 HIS 87 87 ? ? ? B . n B 1 88 HIS 88 88 ? ? ? B . n B 1 89 HIS 89 89 ? ? ? B . n B 1 90 HIS 90 90 ? ? ? B . n B 1 91 HIS 91 91 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 200 200 SO4 SO4 A . D 2 SO4 1 200 200 SO4 SO4 B . E 3 HOH 1 201 201 HOH HOH A . E 3 HOH 2 202 202 HOH HOH A . E 3 HOH 3 203 203 HOH HOH A . E 3 HOH 4 204 204 HOH HOH A . E 3 HOH 5 205 205 HOH HOH A . E 3 HOH 6 206 206 HOH HOH A . E 3 HOH 7 207 207 HOH HOH A . E 3 HOH 8 208 208 HOH HOH A . E 3 HOH 9 209 209 HOH HOH A . E 3 HOH 10 210 210 HOH HOH A . E 3 HOH 11 211 211 HOH HOH A . E 3 HOH 12 212 212 HOH HOH A . E 3 HOH 13 213 213 HOH HOH A . E 3 HOH 14 214 214 HOH HOH A . E 3 HOH 15 215 215 HOH HOH A . E 3 HOH 16 216 216 HOH HOH A . E 3 HOH 17 217 217 HOH HOH A . E 3 HOH 18 218 218 HOH HOH A . E 3 HOH 19 219 219 HOH HOH A . E 3 HOH 20 220 220 HOH HOH A . E 3 HOH 21 221 221 HOH HOH A . E 3 HOH 22 222 222 HOH HOH A . E 3 HOH 23 223 223 HOH HOH A . E 3 HOH 24 224 224 HOH HOH A . E 3 HOH 25 225 225 HOH HOH A . E 3 HOH 26 226 226 HOH HOH A . E 3 HOH 27 227 227 HOH HOH A . E 3 HOH 28 228 228 HOH HOH A . E 3 HOH 29 229 229 HOH HOH A . E 3 HOH 30 230 230 HOH HOH A . E 3 HOH 31 231 231 HOH HOH A . E 3 HOH 32 232 232 HOH HOH A . E 3 HOH 33 233 233 HOH HOH A . E 3 HOH 34 234 234 HOH HOH A . E 3 HOH 35 235 235 HOH HOH A . E 3 HOH 36 236 236 HOH HOH A . E 3 HOH 37 237 237 HOH HOH A . E 3 HOH 38 238 238 HOH HOH A . E 3 HOH 39 239 239 HOH HOH A . E 3 HOH 40 241 241 HOH HOH A . E 3 HOH 41 242 242 HOH HOH A . E 3 HOH 42 243 243 HOH HOH A . E 3 HOH 43 244 244 HOH HOH A . E 3 HOH 44 245 245 HOH HOH A . E 3 HOH 45 246 246 HOH HOH A . E 3 HOH 46 247 247 HOH HOH A . E 3 HOH 47 248 248 HOH HOH A . E 3 HOH 48 249 249 HOH HOH A . E 3 HOH 49 250 250 HOH HOH A . E 3 HOH 50 251 251 HOH HOH A . E 3 HOH 51 252 252 HOH HOH A . E 3 HOH 52 253 253 HOH HOH A . E 3 HOH 53 254 254 HOH HOH A . E 3 HOH 54 255 255 HOH HOH A . E 3 HOH 55 256 256 HOH HOH A . E 3 HOH 56 257 257 HOH HOH A . E 3 HOH 57 258 258 HOH HOH A . E 3 HOH 58 259 259 HOH HOH A . E 3 HOH 59 260 260 HOH HOH A . E 3 HOH 60 261 261 HOH HOH A . E 3 HOH 61 262 262 HOH HOH A . E 3 HOH 62 263 263 HOH HOH A . E 3 HOH 63 264 264 HOH HOH A . E 3 HOH 64 265 265 HOH HOH A . E 3 HOH 65 266 266 HOH HOH A . E 3 HOH 66 267 267 HOH HOH A . E 3 HOH 67 268 268 HOH HOH A . F 3 HOH 1 240 240 HOH HOH B . F 3 HOH 2 241 241 HOH HOH B . F 3 HOH 3 242 242 HOH HOH B . F 3 HOH 4 243 243 HOH HOH B . F 3 HOH 5 244 244 HOH HOH B . F 3 HOH 6 245 245 HOH HOH B . F 3 HOH 7 246 246 HOH HOH B . F 3 HOH 8 247 247 HOH HOH B . F 3 HOH 9 248 248 HOH HOH B . F 3 HOH 10 249 249 HOH HOH B . F 3 HOH 11 250 250 HOH HOH B . F 3 HOH 12 251 251 HOH HOH B . F 3 HOH 13 252 252 HOH HOH B . F 3 HOH 14 253 253 HOH HOH B . F 3 HOH 15 254 254 HOH HOH B . F 3 HOH 16 255 255 HOH HOH B . F 3 HOH 17 256 256 HOH HOH B . F 3 HOH 18 257 257 HOH HOH B . F 3 HOH 19 258 258 HOH HOH B . F 3 HOH 20 259 259 HOH HOH B . F 3 HOH 21 260 260 HOH HOH B . F 3 HOH 22 261 261 HOH HOH B . F 3 HOH 23 262 262 HOH HOH B . F 3 HOH 24 263 263 HOH HOH B . F 3 HOH 25 264 264 HOH HOH B . F 3 HOH 26 265 265 HOH HOH B . F 3 HOH 27 266 266 HOH HOH B . F 3 HOH 28 267 267 HOH HOH B . F 3 HOH 29 268 268 HOH HOH B . F 3 HOH 30 269 269 HOH HOH B . F 3 HOH 31 270 270 HOH HOH B . F 3 HOH 32 271 271 HOH HOH B . F 3 HOH 33 272 272 HOH HOH B . F 3 HOH 34 273 273 HOH HOH B . F 3 HOH 35 274 274 HOH HOH B . F 3 HOH 36 275 275 HOH HOH B . F 3 HOH 37 276 276 HOH HOH B . F 3 HOH 38 277 277 HOH HOH B . F 3 HOH 39 278 278 HOH HOH B . F 3 HOH 40 279 279 HOH HOH B . F 3 HOH 41 280 280 HOH HOH B . F 3 HOH 42 281 281 HOH HOH B . F 3 HOH 43 282 282 HOH HOH B . F 3 HOH 44 283 283 HOH HOH B . F 3 HOH 45 284 284 HOH HOH B . F 3 HOH 46 285 285 HOH HOH B . F 3 HOH 47 286 286 HOH HOH B . F 3 HOH 48 287 287 HOH HOH B . F 3 HOH 49 288 288 HOH HOH B . F 3 HOH 50 289 289 HOH HOH B . F 3 HOH 51 290 290 HOH HOH B . F 3 HOH 52 291 291 HOH HOH B . F 3 HOH 53 292 292 HOH HOH B . F 3 HOH 54 293 293 HOH HOH B . F 3 HOH 55 294 294 HOH HOH B . F 3 HOH 56 295 295 HOH HOH B . F 3 HOH 57 296 296 HOH HOH B . F 3 HOH 58 298 298 HOH HOH B . F 3 HOH 59 299 299 HOH HOH B . F 3 HOH 60 300 300 HOH HOH B . F 3 HOH 61 301 301 HOH HOH B . F 3 HOH 62 302 302 HOH HOH B . F 3 HOH 63 303 303 HOH HOH B . F 3 HOH 64 304 304 HOH HOH B . F 3 HOH 65 305 305 HOH HOH B . F 3 HOH 66 306 306 HOH HOH B . F 3 HOH 67 307 307 HOH HOH B . F 3 HOH 68 308 308 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 5 A MSE 5 ? MET SELENOMETHIONINE 2 A MSE 50 A MSE 50 ? MET SELENOMETHIONINE 3 B MSE 5 B MSE 5 ? MET SELENOMETHIONINE 4 B MSE 50 B MSE 50 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 1 2 B,D,F 2 1,2 A,B,C,D,E,F # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1560 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 146.7532008237 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHELX phasing . ? 5 SHARP phasing . ? 6 ARP/wARP 'model building' . ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 42 ? ? -113.33 53.43 2 1 LEU B 42 ? ? -115.55 50.84 3 1 THR B 64 ? ? -94.72 -148.90 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A GLN 82 ? A GLN 82 6 1 Y 1 A GLY 83 ? A GLY 83 7 1 Y 1 A GLU 84 ? A GLU 84 8 1 Y 1 A GLY 85 ? A GLY 85 9 1 Y 1 A HIS 86 ? A HIS 86 10 1 Y 1 A HIS 87 ? A HIS 87 11 1 Y 1 A HIS 88 ? A HIS 88 12 1 Y 1 A HIS 89 ? A HIS 89 13 1 Y 1 A HIS 90 ? A HIS 90 14 1 Y 1 A HIS 91 ? A HIS 91 15 1 Y 1 B MSE 1 ? B MSE 1 16 1 Y 1 B SER 2 ? B SER 2 17 1 Y 1 B LEU 3 ? B LEU 3 18 1 Y 1 B GLN 82 ? B GLN 82 19 1 Y 1 B GLY 83 ? B GLY 83 20 1 Y 1 B GLU 84 ? B GLU 84 21 1 Y 1 B GLY 85 ? B GLY 85 22 1 Y 1 B HIS 86 ? B HIS 86 23 1 Y 1 B HIS 87 ? B HIS 87 24 1 Y 1 B HIS 88 ? B HIS 88 25 1 Y 1 B HIS 89 ? B HIS 89 26 1 Y 1 B HIS 90 ? B HIS 90 27 1 Y 1 B HIS 91 ? B HIS 91 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #