HEADER TRANSFERASE 16-NOV-07 3BED TITLE MANNOSE/SORBOSE SPECIFIC IIA SUBUNIT OF PHOSPHOTRANSFERASE SYSTEM FROM TITLE 2 ENTEROCOCCUS FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS SYSTEM, IIA COMPONENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 ATCC: 700802; SOURCE 6 GENE: EF_0461; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MANNOSE/SORBOSE, PHOSPHOTRANSFERASE SYSTEM, STRUCTURAL GENOMICS, KEYWDS 2 APC28805, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.WU,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3BED 1 VERSN REVDAT 2 24-FEB-09 3BED 1 VERSN REVDAT 1 27-NOV-07 3BED 0 SPRSDE 27-NOV-07 3BED 2IAC JRNL AUTH J.OSIPIUK,R.WU,S.MOY,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF MANNOSE/SORBOSE SPECIFIC IIA JRNL TITL 2 SUBUNIT OF PHOSPHOTRANSFERASE SYSTEM FROM ENTEROCOCCUS JRNL TITL 3 FAECALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.8 REMARK 3 NUMBER OF REFLECTIONS : 34957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1872 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 32.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.25000 REMARK 3 B22 (A**2) : 3.39000 REMARK 3 B33 (A**2) : -2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2068 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2852 ; 1.805 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;41.374 ;27.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;14.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.128 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.332 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1493 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1196 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1485 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1433 ; 1.697 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2258 ; 2.136 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 699 ; 4.732 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 569 ; 5.418 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2132 ; 4.065 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 330 ; 6.648 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2025 ; 4.280 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB045414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 37.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 31.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M HEPES REMARK 280 BUFFER, 30% PEG 4000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.02950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.75150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.02950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.75150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 148 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 188 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 133 REMARK 465 GLU A 134 REMARK 465 GLU A 135 REMARK 465 GLU A 136 REMARK 465 PHE A 137 REMARK 465 GLU A 138 REMARK 465 GLU A 139 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 130 REMARK 465 LEU B 131 REMARK 465 THR B 132 REMARK 465 ASP B 133 REMARK 465 GLU B 134 REMARK 465 GLU B 135 REMARK 465 GLU B 136 REMARK 465 PHE B 137 REMARK 465 GLU B 138 REMARK 465 GLU B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 201 O HOH B 256 1.87 REMARK 500 O LYS B 54 O HOH B 283 2.15 REMARK 500 O HOH B 159 O HOH B 285 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 128 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MLY A 2 -85.22 -72.19 REMARK 500 ASP B 30 33.30 -140.87 REMARK 500 MLY B 68 118.69 -31.90 REMARK 500 LEU B 92 120.38 -37.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MLY A 2 -35.3 L D WRONG HAND REMARK 500 GLU A 130 24.9 L L OUTSIDE RANGE REMARK 500 MLY B 2 -1.0 L D WRONG HAND REMARK 500 MLY B 68 14.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 263 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 269 DISTANCE = 5.23 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC28805 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 LYSINE RESIDUES OF THE PROTEIN WERE CHEMICALLY REMARK 999 DIMETHYLATED AFTER PROTEIN PURIFICATION. DBREF 3BED A 1 139 UNP Q838I6 Q838I6_ENTFA 1 139 DBREF 3BED B 1 139 UNP Q838I6 Q838I6_ENTFA 1 139 SEQADV 3BED SER A -2 UNP Q838I6 EXPRESSION TAG SEQADV 3BED ASN A -1 UNP Q838I6 EXPRESSION TAG SEQADV 3BED ALA A 0 UNP Q838I6 EXPRESSION TAG SEQADV 3BED SER B -2 UNP Q838I6 EXPRESSION TAG SEQADV 3BED ASN B -1 UNP Q838I6 EXPRESSION TAG SEQADV 3BED ALA B 0 UNP Q838I6 EXPRESSION TAG SEQRES 1 A 142 SER ASN ALA MSE MLY PRO LYS LEU ILE LEU MSE SER HIS SEQRES 2 A 142 GLY ARG MSE ALA GLU GLU THR LEU ALA SER THR GLN MSE SEQRES 3 A 142 ILE VAL GLY GLU LEU ALA ASP ALA ALA ILE VAL SER MSE SEQRES 4 A 142 THR ALA GLU ASP GLY LEU SER GLY THR GLN ALA LYS LEU SEQRES 5 A 142 ALA ALA ILE LEU LYS GLU ALA GLY ASN VAL PRO THR LEU SEQRES 6 A 142 VAL LEU ALA ASP LEU MLY GLY GLY THR PRO CYS ASN VAL SEQRES 7 A 142 ALA MSE MSE ALA MSE GLY THR TYR PRO GLN LEU ARG VAL SEQRES 8 A 142 VAL ALA GLY LEU ASN LEU ALA MSE ALA ILE GLU ALA ALA SEQRES 9 A 142 VAL SER PRO VAL GLU ASN VAL ASP GLU LEU ALA ALA TYR SEQRES 10 A 142 LEU THR GLN ILE GLY GLN SER ALA VAL THR THR ILE ASP SEQRES 11 A 142 LEU PRO GLU LEU THR ASP GLU GLU GLU PHE GLU GLU SEQRES 1 B 142 SER ASN ALA MSE MLY PRO LYS LEU ILE LEU MSE SER HIS SEQRES 2 B 142 GLY ARG MSE ALA GLU GLU THR LEU ALA SER THR GLN MSE SEQRES 3 B 142 ILE VAL GLY GLU LEU ALA ASP ALA ALA ILE VAL SER MSE SEQRES 4 B 142 THR ALA GLU ASP GLY LEU SER GLY THR GLN ALA LYS LEU SEQRES 5 B 142 ALA ALA ILE LEU LYS GLU ALA GLY ASN VAL PRO THR LEU SEQRES 6 B 142 VAL LEU ALA ASP LEU MLY GLY GLY THR PRO CYS ASN VAL SEQRES 7 B 142 ALA MSE MSE ALA MSE GLY THR TYR PRO GLN LEU ARG VAL SEQRES 8 B 142 VAL ALA GLY LEU ASN LEU ALA MSE ALA ILE GLU ALA ALA SEQRES 9 B 142 VAL SER PRO VAL GLU ASN VAL ASP GLU LEU ALA ALA TYR SEQRES 10 B 142 LEU THR GLN ILE GLY GLN SER ALA VAL THR THR ILE ASP SEQRES 11 B 142 LEU PRO GLU LEU THR ASP GLU GLU GLU PHE GLU GLU MODRES 3BED MSE A 1 MET SELENOMETHIONINE MODRES 3BED MLY A 2 LYS N-DIMETHYL-LYSINE MODRES 3BED MSE A 8 MET SELENOMETHIONINE MODRES 3BED MSE A 13 MET SELENOMETHIONINE MODRES 3BED MSE A 23 MET SELENOMETHIONINE MODRES 3BED MSE A 36 MET SELENOMETHIONINE MODRES 3BED MLY A 68 LYS N-DIMETHYL-LYSINE MODRES 3BED MSE A 77 MET SELENOMETHIONINE MODRES 3BED MSE A 78 MET SELENOMETHIONINE MODRES 3BED MSE A 80 MET SELENOMETHIONINE MODRES 3BED MSE A 96 MET SELENOMETHIONINE MODRES 3BED MSE B 1 MET SELENOMETHIONINE MODRES 3BED MLY B 2 LYS N-DIMETHYL-LYSINE MODRES 3BED MSE B 8 MET SELENOMETHIONINE MODRES 3BED MSE B 13 MET SELENOMETHIONINE MODRES 3BED MSE B 23 MET SELENOMETHIONINE MODRES 3BED MSE B 36 MET SELENOMETHIONINE MODRES 3BED MLY B 68 LYS N-DIMETHYL-LYSINE MODRES 3BED MSE B 77 MET SELENOMETHIONINE MODRES 3BED MSE B 78 MET SELENOMETHIONINE MODRES 3BED MSE B 80 MET SELENOMETHIONINE MODRES 3BED MSE B 96 MET SELENOMETHIONINE HET MSE A 1 16 HET MLY A 2 11 HET MSE A 8 8 HET MSE A 13 8 HET MSE A 23 8 HET MSE A 36 8 HET MLY A 68 11 HET MSE A 77 13 HET MSE A 78 8 HET MSE A 80 8 HET MSE A 96 13 HET MSE B 1 13 HET MLY B 2 11 HET MSE B 8 8 HET MSE B 13 8 HET MSE B 23 8 HET MSE B 36 8 HET MLY B 68 11 HET MSE B 77 8 HET MSE B 78 8 HET MSE B 80 8 HET MSE B 96 16 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 1 MLY 4(C8 H18 N2 O2) FORMUL 3 HOH *330(H2 O) HELIX 1 1 ARG A 12 GLY A 26 1 15 HELIX 2 2 ASP A 40 GLY A 57 1 18 HELIX 3 3 GLY A 70 MSE A 80 1 11 HELIX 4 4 ASN A 93 SER A 103 1 11 HELIX 5 5 ASN A 107 ALA A 122 1 16 HELIX 6 6 ARG B 12 GLY B 26 1 15 HELIX 7 7 GLU B 27 ALA B 29 5 3 HELIX 8 8 ASP B 40 GLY B 57 1 18 HELIX 9 9 GLY B 70 MSE B 80 1 11 HELIX 10 10 ASN B 93 SER B 103 1 11 HELIX 11 11 ASN B 107 ALA B 122 1 16 SHEET 1 A 5 ALA A 32 MSE A 36 0 SHEET 2 A 5 LYS A 4 HIS A 10 1 N SER A 9 O MSE A 36 SHEET 3 A 5 THR A 61 ALA A 65 1 O LEU A 62 N LYS A 4 SHEET 4 A 5 LEU A 86 ALA A 90 1 O VAL A 89 N ALA A 65 SHEET 5 A 5 THR B 124 THR B 125 -1 O THR B 124 N ALA A 90 SHEET 1 B 5 THR A 124 ILE A 126 0 SHEET 2 B 5 LEU B 86 ALA B 90 -1 O ALA B 90 N THR A 124 SHEET 3 B 5 THR B 61 ALA B 65 1 N ALA B 65 O VAL B 89 SHEET 4 B 5 LYS B 4 HIS B 10 1 N LYS B 4 O LEU B 62 SHEET 5 B 5 ALA B 32 MSE B 36 1 O ALA B 32 N LEU B 7 LINK C AMSE A 1 N MLY A 2 1555 1555 1.33 LINK C BMSE A 1 N MLY A 2 1555 1555 1.33 LINK C MLY A 2 N PRO A 3 1555 1555 1.33 LINK C LEU A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N SER A 9 1555 1555 1.34 LINK C ARG A 12 N MSE A 13 1555 1555 1.34 LINK C MSE A 13 N ALA A 14 1555 1555 1.34 LINK C GLN A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N ILE A 24 1555 1555 1.33 LINK C SER A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N THR A 37 1555 1555 1.31 LINK C LEU A 67 N MLY A 68 1555 1555 1.30 LINK C MLY A 68 N GLY A 69 1555 1555 1.34 LINK C ALA A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N MSE A 78 1555 1555 1.34 LINK C MSE A 78 N ALA A 79 1555 1555 1.32 LINK C ALA A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLY A 81 1555 1555 1.34 LINK C ALA A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N ALA A 97 1555 1555 1.33 LINK C MSE B 1 N MLY B 2 1555 1555 1.32 LINK C MLY B 2 N PRO B 3 1555 1555 1.35 LINK C LEU B 7 N MSE B 8 1555 1555 1.33 LINK C MSE B 8 N SER B 9 1555 1555 1.33 LINK C ARG B 12 N MSE B 13 1555 1555 1.34 LINK C MSE B 13 N ALA B 14 1555 1555 1.34 LINK C GLN B 22 N MSE B 23 1555 1555 1.34 LINK C MSE B 23 N ILE B 24 1555 1555 1.32 LINK C SER B 35 N MSE B 36 1555 1555 1.35 LINK C MSE B 36 N THR B 37 1555 1555 1.34 LINK C LEU B 67 N MLY B 68 1555 1555 1.35 LINK C MLY B 68 N GLY B 69 1555 1555 1.34 LINK C ALA B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N MSE B 78 1555 1555 1.34 LINK C MSE B 78 N ALA B 79 1555 1555 1.34 LINK C ALA B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N GLY B 81 1555 1555 1.34 LINK C ALA B 95 N AMSE B 96 1555 1555 1.33 LINK C ALA B 95 N BMSE B 96 1555 1555 1.33 LINK C AMSE B 96 N ALA B 97 1555 1555 1.33 LINK C BMSE B 96 N ALA B 97 1555 1555 1.34 CRYST1 106.059 37.503 76.993 90.00 121.49 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009429 0.000000 0.005777 0.00000 SCALE2 0.000000 0.026665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015232 0.00000 HETATM 1 N AMSE A 1 -15.599 33.068 25.995 0.30 27.25 N ANISOU 1 N AMSE A 1 3363 3534 3456 -42 0 -47 N HETATM 2 N BMSE A 1 -15.722 33.084 26.405 0.30 25.71 N ANISOU 2 N BMSE A 1 3181 3354 3231 -1 61 -72 N HETATM 3 CA AMSE A 1 -16.503 34.242 25.978 0.30 27.52 C ANISOU 3 CA AMSE A 1 3413 3555 3485 -45 -14 -62 C HETATM 4 CA BMSE A 1 -16.587 34.234 26.044 0.30 25.89 C ANISOU 4 CA BMSE A 1 3231 3338 3268 0 50 -51 C HETATM 5 C AMSE A 1 -17.768 33.878 25.209 0.30 27.10 C ANISOU 5 C AMSE A 1 3340 3510 3446 -60 -8 -61 C HETATM 6 C BMSE A 1 -17.558 33.843 24.948 0.30 26.06 C ANISOU 6 C BMSE A 1 3230 3409 3260 -53 39 -50 C HETATM 7 O AMSE A 1 -18.262 32.755 25.338 0.30 27.97 O ANISOU 7 O AMSE A 1 3479 3570 3579 -29 27 -74 O HETATM 8 O BMSE A 1 -17.618 32.680 24.562 0.30 26.92 O ANISOU 8 O BMSE A 1 3372 3527 3327 -32 98 -30 O HETATM 9 CB AMSE A 1 -15.806 35.443 25.347 0.30 27.96 C ANISOU 9 CB AMSE A 1 3472 3572 3576 -43 -24 -86 C HETATM 10 CB BMSE A 1 -15.756 35.401 25.557 0.30 25.93 C ANISOU 10 CB BMSE A 1 3260 3308 3282 20 35 -51 C HETATM 11 CG AMSE A 1 -15.958 35.580 23.839 0.30 29.45 C ANISOU 11 CG AMSE A 1 3646 3830 3713 -90 -122 -80 C HETATM 12 CG BMSE A 1 -16.598 36.527 24.966 0.30 25.78 C ANISOU 12 CG BMSE A 1 3187 3305 3303 27 -1 -14 C HETATM 13 SE AMSE A 1 -14.669 34.634 22.750 0.24 32.87 SE ANISOU 13 SE AMSE A 1 3609 4629 4250 -224 -255 -554 SE HETATM 14 SE BMSE A 1 -15.715 37.531 23.562 0.24 25.31 SE ANISOU 14 SE BMSE A 1 3106 3182 3326 75 135 -95 SE HETATM 15 CE AMSE A 1 -13.525 36.183 22.495 0.30 30.67 C ANISOU 15 CE AMSE A 1 3725 4019 3909 18 -106 -142 C HETATM 16 CE BMSE A 1 -14.776 36.060 22.661 0.30 21.23 C ANISOU 16 CE BMSE A 1 2878 2547 2641 -10 17 161 C HETATM 17 N MLY A 2 -18.291 34.836 24.442 1.00 26.85 N ANISOU 17 N MLY A 2 3313 3529 3357 -113 35 -63 N HETATM 18 CA MLY A 2 -19.409 34.620 23.488 1.00 26.18 C ANISOU 18 CA MLY A 2 3140 3569 3237 -109 75 -74 C HETATM 19 CB MLY A 2 -20.536 33.983 24.278 1.00 26.67 C ANISOU 19 CB MLY A 2 3218 3668 3247 -204 114 12 C HETATM 20 CG MLY A 2 -21.819 33.661 23.539 1.00 28.88 C ANISOU 20 CG MLY A 2 3376 3853 3742 -280 71 15 C HETATM 21 CD MLY A 2 -22.486 32.747 24.585 1.00 29.25 C ANISOU 21 CD MLY A 2 3722 3785 3608 -182 19 208 C HETATM 22 CE MLY A 2 -23.929 32.350 24.333 1.00 30.81 C ANISOU 22 CE MLY A 2 3968 3905 3834 -212 -7 61 C HETATM 23 NZ MLY A 2 -24.126 31.051 25.033 1.00 29.18 N ANISOU 23 NZ MLY A 2 3799 4058 3227 -389 -63 194 N HETATM 24 CH1 MLY A 2 -25.139 30.154 24.481 1.00 14.56 C ANISOU 24 CH1 MLY A 2 2298 1914 1316 -309 570 -281 C HETATM 25 CH2 MLY A 2 -24.432 31.330 26.438 1.00 31.79 C ANISOU 25 CH2 MLY A 2 4109 4223 3743 -307 39 -222 C HETATM 26 C MLY A 2 -18.927 33.823 22.279 1.00 24.54 C ANISOU 26 C MLY A 2 2979 3290 3052 -72 50 -91 C HETATM 27 O MLY A 2 -19.028 32.573 22.224 1.00 25.09 O ANISOU 27 O MLY A 2 3037 3395 3099 -139 120 13 O