HEADER HYDROLASE 20-NOV-07 3BER TITLE HUMAN DEAD-BOX RNA-HELICASE DDX47, CONSERVED DOMAIN I IN COMPLEX WITH TITLE 2 AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX47; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CONSERVED DOMAIN I (DEAD): RESIDUES 5-230; COMPND 5 SYNONYM: DEAD BOX PROTEIN 47; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX47; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS RNA HELICASE, DEAD, AMP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, ATP-BINDING, HYDROLASE, NUCLEOTIDE-BINDING, KEYWDS 3 NUCLEUS, RNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,R.D.BUSAM,C.H.ARROWSMITH,H.BERGLUND,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 I.JOHANSSON,A.KALLAS,T.KOTENYOVA,L.LEHTIO,M.MOCHE,M.E.NILSSON, AUTHOR 4 P.NORDLUND,T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON,A.G.THORSELL, AUTHOR 5 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,L.HOLMBERG-SCHIAVONE, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 30-AUG-23 3BER 1 REMARK SEQADV REVDAT 3 27-OCT-10 3BER 1 JRNL REVDAT 2 24-FEB-09 3BER 1 VERSN REVDAT 1 04-DEC-07 3BER 0 JRNL AUTH P.SCHUTZ,T.KARLBERG,S.VAN DEN BERG,R.COLLINS,L.LEHTIO, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG-SCHIAVONE,W.TEMPEL,H.W.PARK, JRNL AUTH 3 M.HAMMARSTROM,M.MOCHE,A.G.THORSELL,H.SCHULER JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX RNA JRNL TITL 2 HELICASES. JRNL REF PLOS ONE V. 5 12791 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20941364 JRNL DOI 10.1371/JOURNAL.PONE.0012791 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.833 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1836 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2497 ; 1.638 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 5.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;37.769 ;25.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;12.646 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1317 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 922 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1312 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.527 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.313 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1169 ; 1.053 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1871 ; 1.697 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 725 ; 2.710 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 4.307 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97472 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) CRYSTALS REMARK 200 OPTICS : LIQUID NITROGEN COOLED CHANNEL REMARK 200 -CUT SILICON MONOCHROMATOR AND A REMARK 200 CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.02900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.14100 REMARK 200 R SYM FOR SHELL (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 14.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42.5% PEG 200, 100MM SODIUM/POTASSIUM REMARK 280 PHOSPHATE, 50MM SODIUM CHLORIDE, PH 5.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.52500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.52500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 672 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 VAL A -8 REMARK 465 ASP A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 THR A -4 REMARK 465 GLU A -3 REMARK 465 ASN A -2 REMARK 465 LEU A -1 REMARK 465 TYR A 0 REMARK 465 PHE A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 HIS A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 450 O HOH A 673 1.66 REMARK 500 O HOH A 693 O HOH A 695 2.02 REMARK 500 OE2 GLU A 175 O HOH A 686 2.11 REMARK 500 NH1 ARG A 178 O HOH A 670 2.13 REMARK 500 O HOH A 563 O HOH A 689 2.13 REMARK 500 O HOH A 601 O HOH A 620 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 484 O HOH A 691 4556 1.71 REMARK 500 O HOH A 484 O HOH A 679 4556 1.88 REMARK 500 O HOH A 457 O HOH A 699 2555 1.90 REMARK 500 OE2 GLU A 185 NZ LYS A 211 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 401 DBREF 3BER A 5 230 UNP Q9H0S4 DDX47_HUMAN 5 230 SEQADV 3BER MET A -18 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER HIS A -17 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER HIS A -16 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER HIS A -15 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER HIS A -14 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER HIS A -13 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER HIS A -12 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER SER A -11 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER SER A -10 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER GLY A -9 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER VAL A -8 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER ASP A -7 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER LEU A -6 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER GLY A -5 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER THR A -4 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER GLU A -3 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER ASN A -2 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER LEU A -1 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER TYR A 0 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER PHE A 1 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER GLN A 2 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER SER A 3 UNP Q9H0S4 EXPRESSION TAG SEQADV 3BER MET A 4 UNP Q9H0S4 EXPRESSION TAG SEQRES 1 A 249 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 249 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLU HIS SEQRES 3 A 249 ASP SER PRO THR GLU ALA SER GLN PRO ILE VAL GLU GLU SEQRES 4 A 249 GLU GLU THR LYS THR PHE LYS ASP LEU GLY VAL THR ASP SEQRES 5 A 249 VAL LEU CYS GLU ALA CYS ASP GLN LEU GLY TRP THR LYS SEQRES 6 A 249 PRO THR LYS ILE GLN ILE GLU ALA ILE PRO LEU ALA LEU SEQRES 7 A 249 GLN GLY ARG ASP ILE ILE GLY LEU ALA GLU THR GLY SER SEQRES 8 A 249 GLY LYS THR GLY ALA PHE ALA LEU PRO ILE LEU ASN ALA SEQRES 9 A 249 LEU LEU GLU THR PRO GLN ARG LEU PHE ALA LEU VAL LEU SEQRES 10 A 249 THR PRO THR ARG GLU LEU ALA PHE GLN ILE SER GLU GLN SEQRES 11 A 249 PHE GLU ALA LEU GLY SER SER ILE GLY VAL GLN SER ALA SEQRES 12 A 249 VAL ILE VAL GLY GLY ILE ASP SER MET SER GLN SER LEU SEQRES 13 A 249 ALA LEU ALA LYS LYS PRO HIS ILE ILE ILE ALA THR PRO SEQRES 14 A 249 GLY ARG LEU ILE ASP HIS LEU GLU ASN THR LYS GLY PHE SEQRES 15 A 249 ASN LEU ARG ALA LEU LYS TYR LEU VAL MET ASP GLU ALA SEQRES 16 A 249 ASP ARG ILE LEU ASN MET ASP PHE GLU THR GLU VAL ASP SEQRES 17 A 249 LYS ILE LEU LYS VAL ILE PRO ARG ASP ARG LYS THR PHE SEQRES 18 A 249 LEU PHE SER ALA THR MET THR LYS LYS VAL GLN LYS LEU SEQRES 19 A 249 GLN ARG ALA ALA LEU LYS ASN PRO VAL LYS CYS ALA VAL SEQRES 20 A 249 SER SER HET PO4 A 350 5 HET AMP A 300 23 HET PGE A 400 10 HET PGE A 401 10 HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 PGE 2(C6 H14 O4) FORMUL 6 HOH *299(H2 O) HELIX 1 1 ILE A 17 LYS A 24 1 8 HELIX 2 2 PHE A 26 GLY A 30 5 5 HELIX 3 3 THR A 32 LEU A 42 1 11 HELIX 4 4 THR A 48 GLN A 60 1 13 HELIX 5 5 GLY A 73 THR A 89 1 17 HELIX 6 6 THR A 101 SER A 117 1 17 HELIX 7 7 SER A 118 GLY A 120 5 3 HELIX 8 8 ASP A 131 LYS A 141 1 11 HELIX 9 9 THR A 149 THR A 160 1 12 HELIX 10 10 GLU A 175 MET A 182 1 8 HELIX 11 11 PHE A 184 VAL A 194 1 11 HELIX 12 12 THR A 209 LEU A 220 1 12 SHEET 1 A 7 SER A 123 ILE A 126 0 SHEET 2 A 7 ILE A 145 ALA A 148 1 O ILE A 147 N ILE A 126 SHEET 3 A 7 ALA A 95 LEU A 98 1 N VAL A 97 O ILE A 146 SHEET 4 A 7 TYR A 170 MET A 173 1 O VAL A 172 N LEU A 98 SHEET 5 A 7 LYS A 200 SER A 205 1 O PHE A 204 N MET A 173 SHEET 6 A 7 ILE A 64 LEU A 67 1 N GLY A 66 O LEU A 203 SHEET 7 A 7 VAL A 224 ALA A 227 1 O CYS A 226 N ILE A 65 SITE 1 AC1 8 GLY A 128 GLY A 129 GLY A 151 ARG A 152 SITE 2 AC1 8 ASP A 155 HOH A 457 HOH A 517 HOH A 568 SITE 1 AC2 17 PHE A 26 TRP A 44 LYS A 46 GLN A 51 SITE 2 AC2 17 THR A 70 GLY A 71 SER A 72 GLY A 73 SITE 3 AC2 17 LYS A 74 THR A 75 GLN A 111 HOH A 404 SITE 4 AC2 17 HOH A 430 HOH A 534 HOH A 543 HOH A 648 SITE 5 AC2 17 HOH A 695 SITE 1 AC3 5 ASP A 155 HIS A 156 ASN A 159 THR A 160 SITE 2 AC3 5 HOH A 580 SITE 1 AC4 9 VAL A 18 LEU A 192 ARG A 197 ARG A 199 SITE 2 AC4 9 ARG A 217 ALA A 218 ALA A 219 LEU A 220 SITE 3 AC4 9 HOH A 521 CRYST1 93.050 70.370 35.860 90.00 90.70 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010747 0.000000 0.000131 0.00000 SCALE2 0.000000 0.014211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027888 0.00000