data_3BF2 # _entry.id 3BF2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BF2 pdb_00003bf2 10.2210/pdb3bf2/pdb RCSB RCSB045439 ? ? WWPDB D_1000045439 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB MR36a . unspecified PDB 2R76 'Crystal structure of the rare lipoprotein B (SO_1173) from Shewanella oneidensis (structurally similar protein)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BF2 _pdbx_database_status.recvd_initial_deposition_date 2007-11-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.M.' 1 'Abashidze, M.' 2 'Seetharaman, J.' 3 'Cunningham, K.' 4 'Maglaqui, M.' 5 'Owens, L.' 6 'Fang, Y.' 7 'Xiao, R.' 8 'Acton, T.B.' 9 'Montelione, G.T.' 10 'Tong, L.' 11 'Hunt, J.F.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 # _citation.id primary _citation.title 'Crystal structure of the A1KSW9_NEIMF protein from Neisseria meningitidis.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vorobiev, S.M.' 1 ? primary 'Abashidze, M.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Cunningham, K.' 4 ? primary 'Maglaqui, M.' 5 ? primary 'Owens, L.' 6 ? primary 'Fang, Y.' 7 ? primary 'Xiao, R.' 8 ? primary 'Acton, T.B.' 9 ? primary 'Montelione, G.T.' 10 ? primary 'Tong, L.' 11 ? primary 'Hunt, J.F.' 12 ? # _cell.entry_id 3BF2 _cell.length_a 65.296 _cell.length_b 65.296 _cell.length_c 92.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BF2 _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative lipoprotein' 17331.871 1 ? L20M 'Residues 17-159' ? 2 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GFH(MSE)KGADGISPPLTYRSWHIEGGQALQFPLETALYQASGRVDDAAGAQ(MSE)TLRIDSVSQNKETYTVT RAAVINEYLLILTVEAQVLKRGEPVGKP(MSE)TVSVRRVLAYADNEILGKQEEEAALWAE(MSE)RQDAAEQIVRRLTF LKAELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGFHMKGADGISPPLTYRSWHIEGGQALQFPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLIL TVEAQVLKRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAELEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MR36a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 PHE n 1 4 HIS n 1 5 MSE n 1 6 LYS n 1 7 GLY n 1 8 ALA n 1 9 ASP n 1 10 GLY n 1 11 ILE n 1 12 SER n 1 13 PRO n 1 14 PRO n 1 15 LEU n 1 16 THR n 1 17 TYR n 1 18 ARG n 1 19 SER n 1 20 TRP n 1 21 HIS n 1 22 ILE n 1 23 GLU n 1 24 GLY n 1 25 GLY n 1 26 GLN n 1 27 ALA n 1 28 LEU n 1 29 GLN n 1 30 PHE n 1 31 PRO n 1 32 LEU n 1 33 GLU n 1 34 THR n 1 35 ALA n 1 36 LEU n 1 37 TYR n 1 38 GLN n 1 39 ALA n 1 40 SER n 1 41 GLY n 1 42 ARG n 1 43 VAL n 1 44 ASP n 1 45 ASP n 1 46 ALA n 1 47 ALA n 1 48 GLY n 1 49 ALA n 1 50 GLN n 1 51 MSE n 1 52 THR n 1 53 LEU n 1 54 ARG n 1 55 ILE n 1 56 ASP n 1 57 SER n 1 58 VAL n 1 59 SER n 1 60 GLN n 1 61 ASN n 1 62 LYS n 1 63 GLU n 1 64 THR n 1 65 TYR n 1 66 THR n 1 67 VAL n 1 68 THR n 1 69 ARG n 1 70 ALA n 1 71 ALA n 1 72 VAL n 1 73 ILE n 1 74 ASN n 1 75 GLU n 1 76 TYR n 1 77 LEU n 1 78 LEU n 1 79 ILE n 1 80 LEU n 1 81 THR n 1 82 VAL n 1 83 GLU n 1 84 ALA n 1 85 GLN n 1 86 VAL n 1 87 LEU n 1 88 LYS n 1 89 ARG n 1 90 GLY n 1 91 GLU n 1 92 PRO n 1 93 VAL n 1 94 GLY n 1 95 LYS n 1 96 PRO n 1 97 MSE n 1 98 THR n 1 99 VAL n 1 100 SER n 1 101 VAL n 1 102 ARG n 1 103 ARG n 1 104 VAL n 1 105 LEU n 1 106 ALA n 1 107 TYR n 1 108 ALA n 1 109 ASP n 1 110 ASN n 1 111 GLU n 1 112 ILE n 1 113 LEU n 1 114 GLY n 1 115 LYS n 1 116 GLN n 1 117 GLU n 1 118 GLU n 1 119 GLU n 1 120 ALA n 1 121 ALA n 1 122 LEU n 1 123 TRP n 1 124 ALA n 1 125 GLU n 1 126 MSE n 1 127 ARG n 1 128 GLN n 1 129 ASP n 1 130 ALA n 1 131 ALA n 1 132 GLU n 1 133 GLN n 1 134 ILE n 1 135 VAL n 1 136 ARG n 1 137 ARG n 1 138 LEU n 1 139 THR n 1 140 PHE n 1 141 LEU n 1 142 LYS n 1 143 ALA n 1 144 GLU n 1 145 LEU n 1 146 GLU n 1 147 HIS n 1 148 HIS n 1 149 HIS n 1 150 HIS n 1 151 HIS n 1 152 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Neisseria _entity_src_gen.pdbx_gene_src_gene NMC0657 _entity_src_gen.gene_src_species 'Neisseria meningitidis' _entity_src_gen.gene_src_strain 'FAM18 / Serogroup C / Serotype 2a' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Neisseria meningitidis FAM18' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272831 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700532 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21-23C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1KSW9_NEIMF _struct_ref.pdbx_db_accession A1KSW9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GFHLKGADGISPPLTYRSWHIEGGQALQFPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLILT VEAQVLKRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAE ; _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BF2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1KSW9 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BF2 MSE A 1 ? UNP A1KSW9 ? ? 'expression tag' 16 1 1 3BF2 MSE A 5 ? UNP A1KSW9 LEU 20 'engineered mutation' 20 2 1 3BF2 LEU A 145 ? UNP A1KSW9 ? ? 'expression tag' 160 3 1 3BF2 GLU A 146 ? UNP A1KSW9 ? ? 'expression tag' 161 4 1 3BF2 HIS A 147 ? UNP A1KSW9 ? ? 'expression tag' 162 5 1 3BF2 HIS A 148 ? UNP A1KSW9 ? ? 'expression tag' 163 6 1 3BF2 HIS A 149 ? UNP A1KSW9 ? ? 'expression tag' 164 7 1 3BF2 HIS A 150 ? UNP A1KSW9 ? ? 'expression tag' 165 8 1 3BF2 HIS A 151 ? UNP A1KSW9 ? ? 'expression tag' 166 9 1 3BF2 HIS A 152 ? UNP A1KSW9 ? ? 'expression tag' 167 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BF2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '2.5 M Li chloride, 0.1 M MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2007-11-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97910 1.0 2 0.97940 1.0 3 0.96785 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97910, 0.97940, 0.96785' # _reflns.entry_id 3BF2 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.6 _reflns.number_obs 11698 _reflns.number_all 11698 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.89 _reflns.B_iso_Wilson_estimate 54.5 _reflns.pdbx_redundancy 15.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.463 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.72 _reflns_shell.pdbx_redundancy 15.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1286 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BF2 _refine.ls_number_reflns_obs 10968 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 563251.90 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.31 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.226 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 552 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 57.8 _refine.aniso_B[1][1] 4.85 _refine.aniso_B[2][2] 4.85 _refine.aniso_B[3][3] -9.70 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.34641 _refine.solvent_model_param_bsol 51.3514 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'The Friedel pairs were used in phasing' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3BF2 _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.35 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 944 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 982 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 41.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.84 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 1493 _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 80.5 _refine_ls_shell.R_factor_R_free 0.258 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 6.3 _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 3BF2 _struct.title 'Crystal structure of the A1KSW9_NEIMF protein from Neisseria meningitidis. Northeast Structural Genomics Consortium target MR36a' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BF2 _struct_keywords.pdbx_keywords LIPOPROTEIN _struct_keywords.text 'Lipoprotein, NESG, MR36a, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'Dimer according to analytical gel filtration' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 25 ? ALA A 39 ? GLY A 40 ALA A 54 1 ? 15 HELX_P HELX_P2 2 GLY A 114 ? PHE A 140 ? GLY A 129 PHE A 155 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 50 C ? ? ? 1_555 A MSE 51 N ? ? A GLN 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 51 C ? ? ? 1_555 A THR 52 N ? ? A MSE 66 A THR 67 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A PRO 96 C ? ? ? 1_555 A MSE 97 N ? ? A PRO 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A MSE 97 C ? ? ? 1_555 A THR 98 N ? ? A MSE 112 A THR 113 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A GLU 125 C ? ? ? 1_555 A MSE 126 N ? ? A GLU 140 A MSE 141 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A MSE 126 C ? ? ? 1_555 A ARG 127 N ? ? A MSE 141 A ARG 142 1_555 ? ? ? ? ? ? ? 1.324 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 42 ? VAL A 43 ? ARG A 57 VAL A 58 A 2 SER A 19 ? GLU A 23 ? SER A 34 GLU A 38 A 3 MSE A 51 ? THR A 64 ? MSE A 66 THR A 79 A 4 TYR A 76 ? LYS A 88 ? TYR A 91 LYS A 103 A 5 GLU A 91 ? PRO A 92 ? GLU A 106 PRO A 107 B 1 ARG A 42 ? VAL A 43 ? ARG A 57 VAL A 58 B 2 SER A 19 ? GLU A 23 ? SER A 34 GLU A 38 B 3 MSE A 51 ? THR A 64 ? MSE A 66 THR A 79 B 4 TYR A 76 ? LYS A 88 ? TYR A 91 LYS A 103 B 5 MSE A 97 ? LEU A 105 ? MSE A 112 LEU A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 42 ? O ARG A 57 N TRP A 20 ? N TRP A 35 A 2 3 N HIS A 21 ? N HIS A 36 O LEU A 53 ? O LEU A 68 A 3 4 N SER A 59 ? N SER A 74 O THR A 81 ? O THR A 96 A 4 5 N LYS A 88 ? N LYS A 103 O GLU A 91 ? O GLU A 106 B 1 2 O ARG A 42 ? O ARG A 57 N TRP A 20 ? N TRP A 35 B 2 3 N HIS A 21 ? N HIS A 36 O LEU A 53 ? O LEU A 68 B 3 4 N SER A 59 ? N SER A 74 O THR A 81 ? O THR A 96 B 4 5 N LEU A 78 ? N LEU A 93 O ARG A 103 ? O ARG A 118 # _database_PDB_matrix.entry_id 3BF2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BF2 _atom_sites.fract_transf_matrix[1][1] 0.015315 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015315 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010812 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 16 ? ? ? A . n A 1 2 GLY 2 17 ? ? ? A . n A 1 3 PHE 3 18 ? ? ? A . n A 1 4 HIS 4 19 ? ? ? A . n A 1 5 MSE 5 20 ? ? ? A . n A 1 6 LYS 6 21 ? ? ? A . n A 1 7 GLY 7 22 ? ? ? A . n A 1 8 ALA 8 23 ? ? ? A . n A 1 9 ASP 9 24 ? ? ? A . n A 1 10 GLY 10 25 ? ? ? A . n A 1 11 ILE 11 26 ? ? ? A . n A 1 12 SER 12 27 ? ? ? A . n A 1 13 PRO 13 28 ? ? ? A . n A 1 14 PRO 14 29 ? ? ? A . n A 1 15 LEU 15 30 30 LEU LEU A . n A 1 16 THR 16 31 31 THR THR A . n A 1 17 TYR 17 32 32 TYR TYR A . n A 1 18 ARG 18 33 33 ARG ALA A . n A 1 19 SER 19 34 34 SER SER A . n A 1 20 TRP 20 35 35 TRP TRP A . n A 1 21 HIS 21 36 36 HIS HIS A . n A 1 22 ILE 22 37 37 ILE ILE A . n A 1 23 GLU 23 38 38 GLU GLU A . n A 1 24 GLY 24 39 39 GLY GLY A . n A 1 25 GLY 25 40 40 GLY GLY A . n A 1 26 GLN 26 41 41 GLN GLN A . n A 1 27 ALA 27 42 42 ALA ALA A . n A 1 28 LEU 28 43 43 LEU LEU A . n A 1 29 GLN 29 44 44 GLN GLN A . n A 1 30 PHE 30 45 45 PHE PHE A . n A 1 31 PRO 31 46 46 PRO PRO A . n A 1 32 LEU 32 47 47 LEU LEU A . n A 1 33 GLU 33 48 48 GLU GLU A . n A 1 34 THR 34 49 49 THR THR A . n A 1 35 ALA 35 50 50 ALA ALA A . n A 1 36 LEU 36 51 51 LEU LEU A . n A 1 37 TYR 37 52 52 TYR TYR A . n A 1 38 GLN 38 53 53 GLN GLN A . n A 1 39 ALA 39 54 54 ALA ALA A . n A 1 40 SER 40 55 55 SER SER A . n A 1 41 GLY 41 56 56 GLY GLY A . n A 1 42 ARG 42 57 57 ARG ARG A . n A 1 43 VAL 43 58 58 VAL VAL A . n A 1 44 ASP 44 59 59 ASP ASP A . n A 1 45 ASP 45 60 60 ASP ALA A . n A 1 46 ALA 46 61 61 ALA ALA A . n A 1 47 ALA 47 62 62 ALA ALA A . n A 1 48 GLY 48 63 63 GLY GLY A . n A 1 49 ALA 49 64 64 ALA ALA A . n A 1 50 GLN 50 65 65 GLN ALA A . n A 1 51 MSE 51 66 66 MSE MSE A . n A 1 52 THR 52 67 67 THR THR A . n A 1 53 LEU 53 68 68 LEU LEU A . n A 1 54 ARG 54 69 69 ARG ARG A . n A 1 55 ILE 55 70 70 ILE ILE A . n A 1 56 ASP 56 71 71 ASP ASP A . n A 1 57 SER 57 72 72 SER SER A . n A 1 58 VAL 58 73 73 VAL VAL A . n A 1 59 SER 59 74 74 SER SER A . n A 1 60 GLN 60 75 75 GLN GLN A . n A 1 61 ASN 61 76 76 ASN ASN A . n A 1 62 LYS 62 77 77 LYS LYS A . n A 1 63 GLU 63 78 78 GLU GLU A . n A 1 64 THR 64 79 79 THR THR A . n A 1 65 TYR 65 80 80 TYR TYR A . n A 1 66 THR 66 81 81 THR THR A . n A 1 67 VAL 67 82 82 VAL VAL A . n A 1 68 THR 68 83 83 THR ALA A . n A 1 69 ARG 69 84 ? ? ? A . n A 1 70 ALA 70 85 ? ? ? A . n A 1 71 ALA 71 86 86 ALA ALA A . n A 1 72 VAL 72 87 87 VAL ALA A . n A 1 73 ILE 73 88 88 ILE ALA A . n A 1 74 ASN 74 89 89 ASN ALA A . n A 1 75 GLU 75 90 90 GLU GLU A . n A 1 76 TYR 76 91 91 TYR TYR A . n A 1 77 LEU 77 92 92 LEU LEU A . n A 1 78 LEU 78 93 93 LEU LEU A . n A 1 79 ILE 79 94 94 ILE ILE A . n A 1 80 LEU 80 95 95 LEU LEU A . n A 1 81 THR 81 96 96 THR THR A . n A 1 82 VAL 82 97 97 VAL VAL A . n A 1 83 GLU 83 98 98 GLU GLU A . n A 1 84 ALA 84 99 99 ALA ALA A . n A 1 85 GLN 85 100 100 GLN GLN A . n A 1 86 VAL 86 101 101 VAL VAL A . n A 1 87 LEU 87 102 102 LEU LEU A . n A 1 88 LYS 88 103 103 LYS LYS A . n A 1 89 ARG 89 104 104 ARG ALA A . n A 1 90 GLY 90 105 105 GLY GLY A . n A 1 91 GLU 91 106 106 GLU GLU A . n A 1 92 PRO 92 107 107 PRO PRO A . n A 1 93 VAL 93 108 108 VAL VAL A . n A 1 94 GLY 94 109 109 GLY GLY A . n A 1 95 LYS 95 110 110 LYS LYS A . n A 1 96 PRO 96 111 111 PRO PRO A . n A 1 97 MSE 97 112 112 MSE MSE A . n A 1 98 THR 98 113 113 THR THR A . n A 1 99 VAL 99 114 114 VAL VAL A . n A 1 100 SER 100 115 115 SER SER A . n A 1 101 VAL 101 116 116 VAL VAL A . n A 1 102 ARG 102 117 117 ARG ARG A . n A 1 103 ARG 103 118 118 ARG ARG A . n A 1 104 VAL 104 119 119 VAL VAL A . n A 1 105 LEU 105 120 120 LEU LEU A . n A 1 106 ALA 106 121 121 ALA ALA A . n A 1 107 TYR 107 122 122 TYR TYR A . n A 1 108 ALA 108 123 123 ALA ALA A . n A 1 109 ASP 109 124 124 ASP ASP A . n A 1 110 ASN 110 125 ? ? ? A . n A 1 111 GLU 111 126 ? ? ? A . n A 1 112 ILE 112 127 ? ? ? A . n A 1 113 LEU 113 128 128 LEU ALA A . n A 1 114 GLY 114 129 129 GLY GLY A . n A 1 115 LYS 115 130 130 LYS LYS A . n A 1 116 GLN 116 131 131 GLN GLN A . n A 1 117 GLU 117 132 132 GLU ALA A . n A 1 118 GLU 118 133 133 GLU GLU A . n A 1 119 GLU 119 134 134 GLU GLU A . n A 1 120 ALA 120 135 135 ALA ALA A . n A 1 121 ALA 121 136 136 ALA ALA A . n A 1 122 LEU 122 137 137 LEU LEU A . n A 1 123 TRP 123 138 138 TRP TRP A . n A 1 124 ALA 124 139 139 ALA ALA A . n A 1 125 GLU 125 140 140 GLU GLU A . n A 1 126 MSE 126 141 141 MSE MSE A . n A 1 127 ARG 127 142 142 ARG ARG A . n A 1 128 GLN 128 143 143 GLN GLN A . n A 1 129 ASP 129 144 144 ASP ASP A . n A 1 130 ALA 130 145 145 ALA ALA A . n A 1 131 ALA 131 146 146 ALA ALA A . n A 1 132 GLU 132 147 147 GLU GLU A . n A 1 133 GLN 133 148 148 GLN GLN A . n A 1 134 ILE 134 149 149 ILE ILE A . n A 1 135 VAL 135 150 150 VAL VAL A . n A 1 136 ARG 136 151 151 ARG ARG A . n A 1 137 ARG 137 152 152 ARG ARG A . n A 1 138 LEU 138 153 153 LEU LEU A . n A 1 139 THR 139 154 154 THR THR A . n A 1 140 PHE 140 155 155 PHE PHE A . n A 1 141 LEU 141 156 156 LEU LEU A . n A 1 142 LYS 142 157 157 LYS ALA A . n A 1 143 ALA 143 158 158 ALA ALA A . n A 1 144 GLU 144 159 159 GLU GLU A . n A 1 145 LEU 145 160 ? ? ? A . n A 1 146 GLU 146 161 ? ? ? A . n A 1 147 HIS 147 162 ? ? ? A . n A 1 148 HIS 148 163 ? ? ? A . n A 1 149 HIS 149 164 ? ? ? A . n A 1 150 HIS 150 165 ? ? ? A . n A 1 151 HIS 151 166 ? ? ? A . n A 1 152 HIS 152 167 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 201 HOH WAT A . B 2 HOH 2 202 202 HOH WAT A . B 2 HOH 3 203 203 HOH WAT A . B 2 HOH 4 204 204 HOH WAT A . B 2 HOH 5 205 205 HOH WAT A . B 2 HOH 6 206 206 HOH WAT A . B 2 HOH 7 207 207 HOH WAT A . B 2 HOH 8 208 208 HOH WAT A . B 2 HOH 9 209 209 HOH WAT A . B 2 HOH 10 210 210 HOH WAT A . B 2 HOH 11 219 219 HOH WAT A . B 2 HOH 12 221 221 HOH WAT A . B 2 HOH 13 223 223 HOH WAT A . B 2 HOH 14 228 228 HOH WAT A . B 2 HOH 15 230 230 HOH WAT A . B 2 HOH 16 235 235 HOH WAT A . B 2 HOH 17 240 240 HOH WAT A . B 2 HOH 18 241 241 HOH WAT A . B 2 HOH 19 242 242 HOH WAT A . B 2 HOH 20 243 243 HOH WAT A . B 2 HOH 21 245 245 HOH WAT A . B 2 HOH 22 246 246 HOH WAT A . B 2 HOH 23 249 249 HOH WAT A . B 2 HOH 24 250 250 HOH WAT A . B 2 HOH 25 252 252 HOH WAT A . B 2 HOH 26 253 253 HOH WAT A . B 2 HOH 27 256 256 HOH WAT A . B 2 HOH 28 257 257 HOH WAT A . B 2 HOH 29 265 265 HOH WAT A . B 2 HOH 30 270 270 HOH WAT A . B 2 HOH 31 272 272 HOH WAT A . B 2 HOH 32 279 279 HOH WAT A . B 2 HOH 33 281 281 HOH WAT A . B 2 HOH 34 285 285 HOH WAT A . B 2 HOH 35 286 286 HOH WAT A . B 2 HOH 36 287 287 HOH WAT A . B 2 HOH 37 290 290 HOH WAT A . B 2 HOH 38 291 291 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 51 A MSE 66 ? MET SELENOMETHIONINE 2 A MSE 97 A MSE 112 ? MET SELENOMETHIONINE 3 A MSE 126 A MSE 141 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x,-y,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.2450000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SHELXDE phasing . ? 5 RESOLVE phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 32 ? ? 49.08 80.36 2 1 TYR A 80 ? ? -107.10 -83.22 3 1 VAL A 82 ? ? -91.97 -73.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 33 ? CG ? A ARG 18 CG 2 1 Y 1 A ARG 33 ? CD ? A ARG 18 CD 3 1 Y 1 A ARG 33 ? NE ? A ARG 18 NE 4 1 Y 1 A ARG 33 ? CZ ? A ARG 18 CZ 5 1 Y 1 A ARG 33 ? NH1 ? A ARG 18 NH1 6 1 Y 1 A ARG 33 ? NH2 ? A ARG 18 NH2 7 1 Y 1 A ASP 60 ? CG ? A ASP 45 CG 8 1 Y 1 A ASP 60 ? OD1 ? A ASP 45 OD1 9 1 Y 1 A ASP 60 ? OD2 ? A ASP 45 OD2 10 1 Y 1 A GLN 65 ? CG ? A GLN 50 CG 11 1 Y 1 A GLN 65 ? CD ? A GLN 50 CD 12 1 Y 1 A GLN 65 ? OE1 ? A GLN 50 OE1 13 1 Y 1 A GLN 65 ? NE2 ? A GLN 50 NE2 14 1 Y 1 A THR 83 ? OG1 ? A THR 68 OG1 15 1 Y 1 A THR 83 ? CG2 ? A THR 68 CG2 16 1 Y 1 A VAL 87 ? CG1 ? A VAL 72 CG1 17 1 Y 1 A VAL 87 ? CG2 ? A VAL 72 CG2 18 1 Y 1 A ILE 88 ? CG1 ? A ILE 73 CG1 19 1 Y 1 A ILE 88 ? CG2 ? A ILE 73 CG2 20 1 Y 1 A ILE 88 ? CD1 ? A ILE 73 CD1 21 1 Y 1 A ASN 89 ? CG ? A ASN 74 CG 22 1 Y 1 A ASN 89 ? OD1 ? A ASN 74 OD1 23 1 Y 1 A ASN 89 ? ND2 ? A ASN 74 ND2 24 1 Y 1 A ARG 104 ? CG ? A ARG 89 CG 25 1 Y 1 A ARG 104 ? CD ? A ARG 89 CD 26 1 Y 1 A ARG 104 ? NE ? A ARG 89 NE 27 1 Y 1 A ARG 104 ? CZ ? A ARG 89 CZ 28 1 Y 1 A ARG 104 ? NH1 ? A ARG 89 NH1 29 1 Y 1 A ARG 104 ? NH2 ? A ARG 89 NH2 30 1 Y 1 A LEU 128 ? CG ? A LEU 113 CG 31 1 Y 1 A LEU 128 ? CD1 ? A LEU 113 CD1 32 1 Y 1 A LEU 128 ? CD2 ? A LEU 113 CD2 33 1 Y 1 A GLU 132 ? CG ? A GLU 117 CG 34 1 Y 1 A GLU 132 ? CD ? A GLU 117 CD 35 1 Y 1 A GLU 132 ? OE1 ? A GLU 117 OE1 36 1 Y 1 A GLU 132 ? OE2 ? A GLU 117 OE2 37 1 Y 1 A LYS 157 ? CG ? A LYS 142 CG 38 1 Y 1 A LYS 157 ? CD ? A LYS 142 CD 39 1 Y 1 A LYS 157 ? CE ? A LYS 142 CE 40 1 Y 1 A LYS 157 ? NZ ? A LYS 142 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 16 ? A MSE 1 2 1 Y 1 A GLY 17 ? A GLY 2 3 1 Y 1 A PHE 18 ? A PHE 3 4 1 Y 1 A HIS 19 ? A HIS 4 5 1 Y 1 A MSE 20 ? A MSE 5 6 1 Y 1 A LYS 21 ? A LYS 6 7 1 Y 1 A GLY 22 ? A GLY 7 8 1 Y 1 A ALA 23 ? A ALA 8 9 1 Y 1 A ASP 24 ? A ASP 9 10 1 Y 1 A GLY 25 ? A GLY 10 11 1 Y 1 A ILE 26 ? A ILE 11 12 1 Y 1 A SER 27 ? A SER 12 13 1 Y 1 A PRO 28 ? A PRO 13 14 1 Y 1 A PRO 29 ? A PRO 14 15 1 Y 1 A ARG 84 ? A ARG 69 16 1 Y 1 A ALA 85 ? A ALA 70 17 1 Y 1 A ASN 125 ? A ASN 110 18 1 Y 1 A GLU 126 ? A GLU 111 19 1 Y 1 A ILE 127 ? A ILE 112 20 1 Y 1 A LEU 160 ? A LEU 145 21 1 Y 1 A GLU 161 ? A GLU 146 22 1 Y 1 A HIS 162 ? A HIS 147 23 1 Y 1 A HIS 163 ? A HIS 148 24 1 Y 1 A HIS 164 ? A HIS 149 25 1 Y 1 A HIS 165 ? A HIS 150 26 1 Y 1 A HIS 166 ? A HIS 151 27 1 Y 1 A HIS 167 ? A HIS 152 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #