data_3BF4 # _entry.id 3BF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BF4 pdb_00003bf4 10.2210/pdb3bf4/pdb RCSB RCSB045441 ? ? WWPDB D_1000045441 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 381874 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3BF4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of EthD-like protein (YP_299883.1) from Ralstonia eutropha JMP134 at 2.10 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3BF4 _cell.length_a 74.540 _cell.length_b 74.540 _cell.length_c 98.870 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BF4 _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ethyl tert-butyl ether degradation EthD protein' 14546.386 2 ? 'Q72Y, Q76Y, E77Y' ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 3 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 4 water nat water 18.015 183 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)IKVNV(MSE)YPYTEGARFDHAYYCDRH(MSE)P(MSE)VKARLGSACAYYT VEKGLAGSASGAPPAFVA(MSE)CAFICDSAENFYAA(MSE)YYHGAEILGDIANYTDIAPVLQISEVVVERSDR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMIKVNVMYPYTEGARFDHAYYCDRHMPMVKARLGSACAYYTVEKGLAGSASGAPPAFVAMC AFICDSAENFYAAMYYHGAEILGDIANYTDIAPVLQISEVVVERSDR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 381874 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 ILE n 1 22 LYS n 1 23 VAL n 1 24 ASN n 1 25 VAL n 1 26 MSE n 1 27 TYR n 1 28 PRO n 1 29 TYR n 1 30 THR n 1 31 GLU n 1 32 GLY n 1 33 ALA n 1 34 ARG n 1 35 PHE n 1 36 ASP n 1 37 HIS n 1 38 ALA n 1 39 TYR n 1 40 TYR n 1 41 CYS n 1 42 ASP n 1 43 ARG n 1 44 HIS n 1 45 MSE n 1 46 PRO n 1 47 MSE n 1 48 VAL n 1 49 LYS n 1 50 ALA n 1 51 ARG n 1 52 LEU n 1 53 GLY n 1 54 SER n 1 55 ALA n 1 56 CYS n 1 57 ALA n 1 58 TYR n 1 59 TYR n 1 60 THR n 1 61 VAL n 1 62 GLU n 1 63 LYS n 1 64 GLY n 1 65 LEU n 1 66 ALA n 1 67 GLY n 1 68 SER n 1 69 ALA n 1 70 SER n 1 71 GLY n 1 72 ALA n 1 73 PRO n 1 74 PRO n 1 75 ALA n 1 76 PHE n 1 77 VAL n 1 78 ALA n 1 79 MSE n 1 80 CYS n 1 81 ALA n 1 82 PHE n 1 83 ILE n 1 84 CYS n 1 85 ASP n 1 86 SER n 1 87 ALA n 1 88 GLU n 1 89 ASN n 1 90 PHE n 1 91 TYR n 1 92 ALA n 1 93 ALA n 1 94 MSE n 1 95 TYR n 1 96 TYR n 1 97 HIS n 1 98 GLY n 1 99 ALA n 1 100 GLU n 1 101 ILE n 1 102 LEU n 1 103 GLY n 1 104 ASP n 1 105 ILE n 1 106 ALA n 1 107 ASN n 1 108 TYR n 1 109 THR n 1 110 ASP n 1 111 ILE n 1 112 ALA n 1 113 PRO n 1 114 VAL n 1 115 LEU n 1 116 GLN n 1 117 ILE n 1 118 SER n 1 119 GLU n 1 120 VAL n 1 121 VAL n 1 122 VAL n 1 123 GLU n 1 124 ARG n 1 125 SER n 1 126 ASP n 1 127 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Cupriavidus _entity_src_gen.pdbx_gene_src_gene 'YP_299883.1, Reut_B5694' _entity_src_gen.gene_src_species 'Cupriavidus necator' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ralstonia eutropha JMP134' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 264198 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q46P95_RALEJ _struct_ref.pdbx_db_accession Q46P95 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIKVNVMYPYTEGARFDHAYYCDRHMPMVKARLGSACAYYTVEKGLAGSASGAPPAFVAMCAFICDSAENFQAAMQEHGA EILGDIANYTDIAPVLQISEVVVERSDR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BF4 A 20 ? 127 ? Q46P95 1 ? 108 ? 1 108 2 1 3BF4 B 20 ? 127 ? Q46P95 1 ? 108 ? 1 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BF4 MSE A 1 ? UNP Q46P95 ? ? 'expression tag' -18 1 1 3BF4 GLY A 2 ? UNP Q46P95 ? ? 'expression tag' -17 2 1 3BF4 SER A 3 ? UNP Q46P95 ? ? 'expression tag' -16 3 1 3BF4 ASP A 4 ? UNP Q46P95 ? ? 'expression tag' -15 4 1 3BF4 LYS A 5 ? UNP Q46P95 ? ? 'expression tag' -14 5 1 3BF4 ILE A 6 ? UNP Q46P95 ? ? 'expression tag' -13 6 1 3BF4 HIS A 7 ? UNP Q46P95 ? ? 'expression tag' -12 7 1 3BF4 HIS A 8 ? UNP Q46P95 ? ? 'expression tag' -11 8 1 3BF4 HIS A 9 ? UNP Q46P95 ? ? 'expression tag' -10 9 1 3BF4 HIS A 10 ? UNP Q46P95 ? ? 'expression tag' -9 10 1 3BF4 HIS A 11 ? UNP Q46P95 ? ? 'expression tag' -8 11 1 3BF4 HIS A 12 ? UNP Q46P95 ? ? 'expression tag' -7 12 1 3BF4 GLU A 13 ? UNP Q46P95 ? ? 'expression tag' -6 13 1 3BF4 ASN A 14 ? UNP Q46P95 ? ? 'expression tag' -5 14 1 3BF4 LEU A 15 ? UNP Q46P95 ? ? 'expression tag' -4 15 1 3BF4 TYR A 16 ? UNP Q46P95 ? ? 'expression tag' -3 16 1 3BF4 PHE A 17 ? UNP Q46P95 ? ? 'expression tag' -2 17 1 3BF4 GLN A 18 ? UNP Q46P95 ? ? 'expression tag' -1 18 1 3BF4 GLY A 19 ? UNP Q46P95 ? ? 'expression tag' 0 19 1 3BF4 TYR A 91 ? UNP Q46P95 GLN 72 'engineered mutation' 72 20 1 3BF4 TYR A 95 ? UNP Q46P95 GLN 76 'engineered mutation' 76 21 1 3BF4 TYR A 96 ? UNP Q46P95 GLU 77 'engineered mutation' 77 22 2 3BF4 MSE B 1 ? UNP Q46P95 ? ? 'expression tag' -18 23 2 3BF4 GLY B 2 ? UNP Q46P95 ? ? 'expression tag' -17 24 2 3BF4 SER B 3 ? UNP Q46P95 ? ? 'expression tag' -16 25 2 3BF4 ASP B 4 ? UNP Q46P95 ? ? 'expression tag' -15 26 2 3BF4 LYS B 5 ? UNP Q46P95 ? ? 'expression tag' -14 27 2 3BF4 ILE B 6 ? UNP Q46P95 ? ? 'expression tag' -13 28 2 3BF4 HIS B 7 ? UNP Q46P95 ? ? 'expression tag' -12 29 2 3BF4 HIS B 8 ? UNP Q46P95 ? ? 'expression tag' -11 30 2 3BF4 HIS B 9 ? UNP Q46P95 ? ? 'expression tag' -10 31 2 3BF4 HIS B 10 ? UNP Q46P95 ? ? 'expression tag' -9 32 2 3BF4 HIS B 11 ? UNP Q46P95 ? ? 'expression tag' -8 33 2 3BF4 HIS B 12 ? UNP Q46P95 ? ? 'expression tag' -7 34 2 3BF4 GLU B 13 ? UNP Q46P95 ? ? 'expression tag' -6 35 2 3BF4 ASN B 14 ? UNP Q46P95 ? ? 'expression tag' -5 36 2 3BF4 LEU B 15 ? UNP Q46P95 ? ? 'expression tag' -4 37 2 3BF4 TYR B 16 ? UNP Q46P95 ? ? 'expression tag' -3 38 2 3BF4 PHE B 17 ? UNP Q46P95 ? ? 'expression tag' -2 39 2 3BF4 GLN B 18 ? UNP Q46P95 ? ? 'expression tag' -1 40 2 3BF4 GLY B 19 ? UNP Q46P95 ? ? 'expression tag' 0 41 2 3BF4 TYR B 91 ? UNP Q46P95 GLN 72 'engineered mutation' 72 42 2 3BF4 TYR B 95 ? UNP Q46P95 GLN 76 'engineered mutation' 76 43 2 3BF4 TYR B 96 ? UNP Q46P95 GLU 77 'engineered mutation' 77 44 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3BF4 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 15.0% Glycerol, 8.5% Isopropanol, 17.0% PEG 4000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'KOHZU: Double crystal Si(111)' _diffrn_detector.pdbx_collection_date 2007-11-01 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9184 1.0 3 0.9796 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength_list '0.9795, 0.9184, 0.9796' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 3BF4 _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 29.761 _reflns.number_obs 16887 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.pdbx_netI_over_sigmaI 9.750 _reflns.percent_possible_obs 98.800 _reflns.B_iso_Wilson_estimate 29.47 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.10 2.17 10523 ? 2793 0.653 2.1 ? ? ? ? ? 95.80 1 1 2.17 2.26 12478 ? 3280 0.539 2.5 ? ? ? ? ? 100.00 2 1 2.26 2.36 11500 ? 3011 0.475 2.9 ? ? ? ? ? 100.00 3 1 2.36 2.49 12593 ? 3294 0.359 3.8 ? ? ? ? ? 100.00 4 1 2.49 2.64 11429 ? 2987 0.250 5.2 ? ? ? ? ? 99.90 5 1 2.64 2.85 12283 ? 3215 0.172 7.4 ? ? ? ? ? 100.00 6 1 2.85 3.13 11523 ? 3046 0.110 11.1 ? ? ? ? ? 99.80 7 1 3.13 3.59 11787 ? 3160 0.067 16.1 ? ? ? ? ? 99.50 8 1 3.59 4.51 11177 ? 3052 0.043 22.4 ? ? ? ? ? 98.40 9 1 4.51 29.761 10704 ? 2977 0.038 24.4 ? ? ? ? ? 93.90 10 1 # _refine.entry_id 3BF4 _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 29.761 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.820 _refine.ls_number_reflns_obs 16836 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. EDO AND IPA MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTIONS ARE MODELED. 5. THERE ARE SOME UNMODELED DENSITIES NEAR RESIDUES B51-52. ; _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_R_work 0.178 _refine.ls_R_factor_R_free 0.212 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 849 _refine.B_iso_mean 44.605 _refine.aniso_B[1][1] -0.190 _refine.aniso_B[2][2] -0.190 _refine.aniso_B[3][3] 0.390 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.pdbx_overall_ESU_R 0.187 _refine.pdbx_overall_ESU_R_Free 0.159 _refine.overall_SU_ML 0.115 _refine.overall_SU_B 8.568 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1735 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 1942 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 29.761 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1823 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1202 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2470 1.539 1.954 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2904 1.317 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 232 4.012 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 82 26.780 23.049 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 264 10.360 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 12.783 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 259 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2085 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 405 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 303 0.169 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1128 0.135 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 875 0.164 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 891 0.071 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 123 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 13 0.104 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 28 0.108 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1291 1.592 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 461 0.419 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1814 2.134 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 784 3.760 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 653 4.948 11.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'MEDIUM POSITIONAL' A 1027 0.330 0.500 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'LOOSE POSITIONAL' A 324 0.480 5.000 1 'X-RAY DIFFRACTION' 2 ? ? ? 1 'MEDIUM THERMAL' A 1027 0.770 2.000 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 'LOOSE THERMAL' A 324 1.850 10.000 1 'X-RAY DIFFRACTION' 4 ? ? ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.155 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.180 _refine_ls_shell.number_reflns_R_work 1154 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.230 _refine_ls_shell.R_factor_R_free 0.263 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1214 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 19 A 100 4 . . GLY GLU A 0 A 81 1 ? 2 1 B 19 B 100 4 . . GLY GLU B 0 B 81 1 ? 3 2 A 101 A 127 6 . . ILE ARG A 82 A 108 1 ? 4 2 B 101 B 127 6 . . ILE ARG B 82 B 108 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3BF4 _struct.title 'Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ferredoxin-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3BF4 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 36 ? ARG A 43 ? ASP A 17 ARG A 24 1 ? 8 HELX_P HELX_P2 2 ARG A 43 ? GLY A 53 ? ARG A 24 GLY A 34 1 ? 11 HELX_P HELX_P3 3 SER A 54 ? CYS A 56 ? SER A 35 CYS A 37 5 ? 3 HELX_P HELX_P4 4 SER A 86 ? ASP A 104 ? SER A 67 ASP A 85 1 ? 19 HELX_P HELX_P5 5 ILE A 105 ? TYR A 108 ? ILE A 86 TYR A 89 5 ? 4 HELX_P HELX_P6 6 ASP B 36 ? ARG B 43 ? ASP B 17 ARG B 24 1 ? 8 HELX_P HELX_P7 7 ARG B 43 ? GLY B 53 ? ARG B 24 GLY B 34 1 ? 11 HELX_P HELX_P8 8 SER B 54 ? CYS B 56 ? SER B 35 CYS B 37 5 ? 3 HELX_P HELX_P9 9 ALA B 87 ? HIS B 97 ? ALA B 68 HIS B 78 1 ? 11 HELX_P HELX_P10 10 HIS B 97 ? ILE B 105 ? HIS B 78 ILE B 86 1 ? 9 HELX_P HELX_P11 11 ALA B 106 ? TYR B 108 ? ALA B 87 TYR B 89 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A ILE 21 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A VAL 25 C ? ? ? 1_555 A MSE 26 N ? ? A VAL 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 26 C ? ? ? 1_555 A TYR 27 N ? ? A MSE 7 A TYR 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? A HIS 44 C ? ? ? 1_555 A MSE 45 N ? ? A HIS 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MSE 45 C ? ? ? 1_555 A PRO 46 N ? ? A MSE 26 A PRO 27 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale7 covale both ? A PRO 46 C ? ? ? 1_555 A MSE 47 N ? ? A PRO 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale8 covale both ? A MSE 47 C ? ? ? 1_555 A VAL 48 N ? ? A MSE 28 A VAL 29 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale9 covale both ? A ALA 78 C ? ? ? 1_555 A MSE 79 N ? ? A ALA 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? A MSE 79 C ? ? ? 1_555 A CYS 80 N ? ? A MSE 60 A CYS 61 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? A ALA 93 C ? ? ? 1_555 A MSE 94 N ? ? A ALA 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale12 covale both ? A MSE 94 C ? ? ? 1_555 A TYR 95 N ? ? A MSE 75 A TYR 76 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? B GLY 19 C ? ? ? 1_555 B MSE 20 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale both ? B MSE 20 C ? ? ? 1_555 B ILE 21 N ? ? B MSE 1 B ILE 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? B VAL 25 C ? ? ? 1_555 B MSE 26 N ? ? B VAL 6 B MSE 7 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale16 covale both ? B MSE 26 C ? ? ? 1_555 B TYR 27 N ? ? B MSE 7 B TYR 8 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale17 covale both ? B HIS 44 C ? ? ? 1_555 B MSE 45 N ? ? B HIS 25 B MSE 26 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale18 covale both ? B MSE 45 C ? ? ? 1_555 B PRO 46 N ? ? B MSE 26 B PRO 27 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale19 covale both ? B PRO 46 C ? ? ? 1_555 B MSE 47 N ? ? B PRO 27 B MSE 28 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale20 covale both ? B MSE 47 C ? ? ? 1_555 B VAL 48 N ? ? B MSE 28 B VAL 29 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale21 covale both ? B ALA 78 C ? ? ? 1_555 B MSE 79 N ? ? B ALA 59 B MSE 60 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale22 covale both ? B MSE 79 C ? ? ? 1_555 B CYS 80 N ? ? B MSE 60 B CYS 61 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale23 covale both ? B ALA 93 C ? ? ? 1_555 B MSE 94 N ? ? B ALA 74 B MSE 75 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? B MSE 94 C ? ? ? 1_555 B TYR 95 N ? ? B MSE 75 B TYR 76 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 21 ? PRO A 28 ? ILE A 2 PRO A 9 A 2 PHE A 76 ? CYS A 84 ? PHE A 57 CYS A 65 A 3 TYR A 58 ? ALA A 66 ? TYR A 39 ALA A 47 A 4 VAL B 114 ? VAL B 122 ? VAL B 95 VAL B 103 A 5 GLN B 18 ? PRO B 28 ? GLN B -1 PRO B 9 A 6 PHE B 76 ? SER B 86 ? PHE B 57 SER B 67 A 7 TYR B 58 ? GLY B 67 ? TYR B 39 GLY B 48 A 8 VAL A 114 ? VAL A 122 ? VAL A 95 VAL A 103 A 9 ILE A 21 ? PRO A 28 ? ILE A 2 PRO A 9 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 21 ? N ILE A 2 O CYS A 84 ? O CYS A 65 A 2 3 O ILE A 83 ? O ILE A 64 N TYR A 58 ? N TYR A 39 A 3 4 N LYS A 63 ? N LYS A 44 O GLU B 119 ? O GLU B 100 A 4 5 O GLN B 116 ? O GLN B 97 N ASN B 24 ? N ASN B 5 A 5 6 N ILE B 21 ? N ILE B 2 O CYS B 84 ? O CYS B 65 A 6 7 O ILE B 83 ? O ILE B 64 N TYR B 58 ? N TYR B 39 A 7 8 O LYS B 63 ? O LYS B 44 N GLU A 119 ? N GLU A 100 A 8 9 O GLN A 116 ? O GLN A 97 N ASN A 24 ? N ASN A 5 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B EDO 109 ? 7 'BINDING SITE FOR RESIDUE EDO B 109' AC2 Software B EDO 110 ? 8 'BINDING SITE FOR RESIDUE EDO B 110' AC3 Software B EDO 111 ? 2 'BINDING SITE FOR RESIDUE EDO B 111' AC4 Software A EDO 109 ? 6 'BINDING SITE FOR RESIDUE EDO A 109' AC5 Software B EDO 112 ? 5 'BINDING SITE FOR RESIDUE EDO B 112' AC6 Software B IPA 113 ? 1 'BINDING SITE FOR RESIDUE IPA B 113' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 THR A 60 ? THR A 41 . ? 1_555 ? 2 AC1 7 HOH I . ? HOH A 128 . ? 1_555 ? 3 AC1 7 LYS B 22 ? LYS B 3 . ? 1_555 ? 4 AC1 7 TYR B 58 ? TYR B 39 . ? 1_555 ? 5 AC1 7 GLU B 123 ? GLU B 104 . ? 1_555 ? 6 AC1 7 HOH J . ? HOH B 199 . ? 1_555 ? 7 AC1 7 HOH J . ? HOH B 204 . ? 1_555 ? 8 AC2 8 TYR A 95 ? TYR A 76 . ? 4_455 ? 9 AC2 8 VAL B 25 ? VAL B 6 . ? 1_555 ? 10 AC2 8 TYR B 27 ? TYR B 8 . ? 1_555 ? 11 AC2 8 TYR B 40 ? TYR B 21 . ? 1_555 ? 12 AC2 8 HIS B 44 ? HIS B 25 . ? 1_555 ? 13 AC2 8 CYS B 80 ? CYS B 61 . ? 1_555 ? 14 AC2 8 ILE B 101 ? ILE B 82 . ? 1_555 ? 15 AC2 8 TYR B 108 ? TYR B 89 . ? 1_555 ? 16 AC3 2 ASP B 85 ? ASP B 66 . ? 1_555 ? 17 AC3 2 GLU B 123 ? GLU B 104 . ? 1_555 ? 18 AC4 6 VAL A 25 ? VAL A 6 . ? 1_555 ? 19 AC4 6 TYR A 27 ? TYR A 8 . ? 1_555 ? 20 AC4 6 TYR A 40 ? TYR A 21 . ? 1_555 ? 21 AC4 6 HIS A 44 ? HIS A 25 . ? 1_555 ? 22 AC4 6 CYS A 80 ? CYS A 61 . ? 1_555 ? 23 AC4 6 TYR A 108 ? TYR A 89 . ? 1_555 ? 24 AC5 5 GLU B 100 ? GLU B 81 . ? 7_556 ? 25 AC5 5 ALA B 106 ? ALA B 87 . ? 1_555 ? 26 AC5 5 ASN B 107 ? ASN B 88 . ? 1_555 ? 27 AC5 5 HOH J . ? HOH B 211 . ? 1_555 ? 28 AC5 5 HOH J . ? HOH B 212 . ? 1_555 ? 29 AC6 1 HOH J . ? HOH B 171 . ? 1_555 ? # _atom_sites.entry_id 3BF4 _atom_sites.fract_transf_matrix[1][1] 0.013416 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010114 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 ILE 21 2 2 ILE ILE A . n A 1 22 LYS 22 3 3 LYS LYS A . n A 1 23 VAL 23 4 4 VAL VAL A . n A 1 24 ASN 24 5 5 ASN ASN A . n A 1 25 VAL 25 6 6 VAL VAL A . n A 1 26 MSE 26 7 7 MSE MSE A . n A 1 27 TYR 27 8 8 TYR TYR A . n A 1 28 PRO 28 9 9 PRO PRO A . n A 1 29 TYR 29 10 10 TYR TYR A . n A 1 30 THR 30 11 11 THR THR A . n A 1 31 GLU 31 12 12 GLU GLU A . n A 1 32 GLY 32 13 13 GLY GLY A . n A 1 33 ALA 33 14 14 ALA ALA A . n A 1 34 ARG 34 15 15 ARG ARG A . n A 1 35 PHE 35 16 16 PHE PHE A . n A 1 36 ASP 36 17 17 ASP ASP A . n A 1 37 HIS 37 18 18 HIS HIS A . n A 1 38 ALA 38 19 19 ALA ALA A . n A 1 39 TYR 39 20 20 TYR TYR A . n A 1 40 TYR 40 21 21 TYR TYR A . n A 1 41 CYS 41 22 22 CYS CYS A . n A 1 42 ASP 42 23 23 ASP ASP A . n A 1 43 ARG 43 24 24 ARG ARG A . n A 1 44 HIS 44 25 25 HIS HIS A . n A 1 45 MSE 45 26 26 MSE MSE A . n A 1 46 PRO 46 27 27 PRO PRO A . n A 1 47 MSE 47 28 28 MSE MSE A . n A 1 48 VAL 48 29 29 VAL VAL A . n A 1 49 LYS 49 30 30 LYS LYS A . n A 1 50 ALA 50 31 31 ALA ALA A . n A 1 51 ARG 51 32 32 ARG ARG A . n A 1 52 LEU 52 33 33 LEU LEU A . n A 1 53 GLY 53 34 34 GLY GLY A . n A 1 54 SER 54 35 35 SER SER A . n A 1 55 ALA 55 36 36 ALA ALA A . n A 1 56 CYS 56 37 37 CYS CYS A . n A 1 57 ALA 57 38 38 ALA ALA A . n A 1 58 TYR 58 39 39 TYR TYR A . n A 1 59 TYR 59 40 40 TYR TYR A . n A 1 60 THR 60 41 41 THR THR A . n A 1 61 VAL 61 42 42 VAL VAL A . n A 1 62 GLU 62 43 43 GLU GLU A . n A 1 63 LYS 63 44 44 LYS LYS A . n A 1 64 GLY 64 45 45 GLY GLY A . n A 1 65 LEU 65 46 46 LEU LEU A . n A 1 66 ALA 66 47 47 ALA ALA A . n A 1 67 GLY 67 48 48 GLY GLY A . n A 1 68 SER 68 49 49 SER SER A . n A 1 69 ALA 69 50 50 ALA ALA A . n A 1 70 SER 70 51 51 SER SER A . n A 1 71 GLY 71 52 52 GLY GLY A . n A 1 72 ALA 72 53 53 ALA ALA A . n A 1 73 PRO 73 54 54 PRO PRO A . n A 1 74 PRO 74 55 55 PRO PRO A . n A 1 75 ALA 75 56 56 ALA ALA A . n A 1 76 PHE 76 57 57 PHE PHE A . n A 1 77 VAL 77 58 58 VAL VAL A . n A 1 78 ALA 78 59 59 ALA ALA A . n A 1 79 MSE 79 60 60 MSE MSE A . n A 1 80 CYS 80 61 61 CYS CYS A . n A 1 81 ALA 81 62 62 ALA ALA A . n A 1 82 PHE 82 63 63 PHE PHE A . n A 1 83 ILE 83 64 64 ILE ILE A . n A 1 84 CYS 84 65 65 CYS CYS A . n A 1 85 ASP 85 66 66 ASP ASP A . n A 1 86 SER 86 67 67 SER SER A . n A 1 87 ALA 87 68 68 ALA ALA A . n A 1 88 GLU 88 69 69 GLU GLU A . n A 1 89 ASN 89 70 70 ASN ASN A . n A 1 90 PHE 90 71 71 PHE PHE A . n A 1 91 TYR 91 72 72 TYR TYR A . n A 1 92 ALA 92 73 73 ALA ALA A . n A 1 93 ALA 93 74 74 ALA ALA A . n A 1 94 MSE 94 75 75 MSE MSE A . n A 1 95 TYR 95 76 76 TYR TYR A . n A 1 96 TYR 96 77 77 TYR TYR A . n A 1 97 HIS 97 78 78 HIS HIS A . n A 1 98 GLY 98 79 79 GLY GLY A . n A 1 99 ALA 99 80 80 ALA ALA A . n A 1 100 GLU 100 81 81 GLU GLU A . n A 1 101 ILE 101 82 82 ILE ILE A . n A 1 102 LEU 102 83 83 LEU LEU A . n A 1 103 GLY 103 84 84 GLY GLY A . n A 1 104 ASP 104 85 85 ASP ASP A . n A 1 105 ILE 105 86 86 ILE ILE A . n A 1 106 ALA 106 87 87 ALA ALA A . n A 1 107 ASN 107 88 88 ASN ASN A . n A 1 108 TYR 108 89 89 TYR TYR A . n A 1 109 THR 109 90 90 THR THR A . n A 1 110 ASP 110 91 91 ASP ASP A . n A 1 111 ILE 111 92 92 ILE ILE A . n A 1 112 ALA 112 93 93 ALA ALA A . n A 1 113 PRO 113 94 94 PRO PRO A . n A 1 114 VAL 114 95 95 VAL VAL A . n A 1 115 LEU 115 96 96 LEU LEU A . n A 1 116 GLN 116 97 97 GLN GLN A . n A 1 117 ILE 117 98 98 ILE ILE A . n A 1 118 SER 118 99 99 SER SER A . n A 1 119 GLU 119 100 100 GLU GLU A . n A 1 120 VAL 120 101 101 VAL VAL A . n A 1 121 VAL 121 102 102 VAL VAL A . n A 1 122 VAL 122 103 103 VAL VAL A . n A 1 123 GLU 123 104 104 GLU GLU A . n A 1 124 ARG 124 105 105 ARG ARG A . n A 1 125 SER 125 106 106 SER SER A . n A 1 126 ASP 126 107 107 ASP ASP A . n A 1 127 ARG 127 108 108 ARG ARG A . n B 1 1 MSE 1 -18 ? ? ? B . n B 1 2 GLY 2 -17 ? ? ? B . n B 1 3 SER 3 -16 ? ? ? B . n B 1 4 ASP 4 -15 ? ? ? B . n B 1 5 LYS 5 -14 ? ? ? B . n B 1 6 ILE 6 -13 ? ? ? B . n B 1 7 HIS 7 -12 ? ? ? B . n B 1 8 HIS 8 -11 ? ? ? B . n B 1 9 HIS 9 -10 ? ? ? B . n B 1 10 HIS 10 -9 ? ? ? B . n B 1 11 HIS 11 -8 ? ? ? B . n B 1 12 HIS 12 -7 ? ? ? B . n B 1 13 GLU 13 -6 ? ? ? B . n B 1 14 ASN 14 -5 ? ? ? B . n B 1 15 LEU 15 -4 ? ? ? B . n B 1 16 TYR 16 -3 ? ? ? B . n B 1 17 PHE 17 -2 -2 PHE PHE B . n B 1 18 GLN 18 -1 -1 GLN GLN B . n B 1 19 GLY 19 0 0 GLY GLY B . n B 1 20 MSE 20 1 1 MSE MSE B . n B 1 21 ILE 21 2 2 ILE ILE B . n B 1 22 LYS 22 3 3 LYS LYS B . n B 1 23 VAL 23 4 4 VAL VAL B . n B 1 24 ASN 24 5 5 ASN ASN B . n B 1 25 VAL 25 6 6 VAL VAL B . n B 1 26 MSE 26 7 7 MSE MSE B . n B 1 27 TYR 27 8 8 TYR TYR B . n B 1 28 PRO 28 9 9 PRO PRO B . n B 1 29 TYR 29 10 10 TYR TYR B . n B 1 30 THR 30 11 11 THR THR B . n B 1 31 GLU 31 12 12 GLU GLU B . n B 1 32 GLY 32 13 13 GLY GLY B . n B 1 33 ALA 33 14 14 ALA ALA B . n B 1 34 ARG 34 15 15 ARG ARG B . n B 1 35 PHE 35 16 16 PHE PHE B . n B 1 36 ASP 36 17 17 ASP ASP B . n B 1 37 HIS 37 18 18 HIS HIS B . n B 1 38 ALA 38 19 19 ALA ALA B . n B 1 39 TYR 39 20 20 TYR TYR B . n B 1 40 TYR 40 21 21 TYR TYR B . n B 1 41 CYS 41 22 22 CYS CYS B . n B 1 42 ASP 42 23 23 ASP ASP B . n B 1 43 ARG 43 24 24 ARG ARG B . n B 1 44 HIS 44 25 25 HIS HIS B . n B 1 45 MSE 45 26 26 MSE MSE B . n B 1 46 PRO 46 27 27 PRO PRO B . n B 1 47 MSE 47 28 28 MSE MSE B . n B 1 48 VAL 48 29 29 VAL VAL B . n B 1 49 LYS 49 30 30 LYS LYS B . n B 1 50 ALA 50 31 31 ALA ALA B . n B 1 51 ARG 51 32 32 ARG ARG B . n B 1 52 LEU 52 33 33 LEU LEU B . n B 1 53 GLY 53 34 34 GLY GLY B . n B 1 54 SER 54 35 35 SER SER B . n B 1 55 ALA 55 36 36 ALA ALA B . n B 1 56 CYS 56 37 37 CYS CYS B . n B 1 57 ALA 57 38 38 ALA ALA B . n B 1 58 TYR 58 39 39 TYR TYR B . n B 1 59 TYR 59 40 40 TYR TYR B . n B 1 60 THR 60 41 41 THR THR B . n B 1 61 VAL 61 42 42 VAL VAL B . n B 1 62 GLU 62 43 43 GLU GLU B . n B 1 63 LYS 63 44 44 LYS LYS B . n B 1 64 GLY 64 45 45 GLY GLY B . n B 1 65 LEU 65 46 46 LEU LEU B . n B 1 66 ALA 66 47 47 ALA ALA B . n B 1 67 GLY 67 48 48 GLY GLY B . n B 1 68 SER 68 49 49 SER SER B . n B 1 69 ALA 69 50 50 ALA ALA B . n B 1 70 SER 70 51 51 SER SER B . n B 1 71 GLY 71 52 52 GLY GLY B . n B 1 72 ALA 72 53 53 ALA ALA B . n B 1 73 PRO 73 54 54 PRO PRO B . n B 1 74 PRO 74 55 55 PRO PRO B . n B 1 75 ALA 75 56 56 ALA ALA B . n B 1 76 PHE 76 57 57 PHE PHE B . n B 1 77 VAL 77 58 58 VAL VAL B . n B 1 78 ALA 78 59 59 ALA ALA B . n B 1 79 MSE 79 60 60 MSE MSE B . n B 1 80 CYS 80 61 61 CYS CYS B . n B 1 81 ALA 81 62 62 ALA ALA B . n B 1 82 PHE 82 63 63 PHE PHE B . n B 1 83 ILE 83 64 64 ILE ILE B . n B 1 84 CYS 84 65 65 CYS CYS B . n B 1 85 ASP 85 66 66 ASP ASP B . n B 1 86 SER 86 67 67 SER SER B . n B 1 87 ALA 87 68 68 ALA ALA B . n B 1 88 GLU 88 69 69 GLU GLU B . n B 1 89 ASN 89 70 70 ASN ASN B . n B 1 90 PHE 90 71 71 PHE PHE B . n B 1 91 TYR 91 72 72 TYR TYR B . n B 1 92 ALA 92 73 73 ALA ALA B . n B 1 93 ALA 93 74 74 ALA ALA B . n B 1 94 MSE 94 75 75 MSE MSE B . n B 1 95 TYR 95 76 76 TYR TYR B . n B 1 96 TYR 96 77 77 TYR TYR B . n B 1 97 HIS 97 78 78 HIS HIS B . n B 1 98 GLY 98 79 79 GLY GLY B . n B 1 99 ALA 99 80 80 ALA ALA B . n B 1 100 GLU 100 81 81 GLU GLU B . n B 1 101 ILE 101 82 82 ILE ILE B . n B 1 102 LEU 102 83 83 LEU LEU B . n B 1 103 GLY 103 84 84 GLY GLY B . n B 1 104 ASP 104 85 85 ASP ASP B . n B 1 105 ILE 105 86 86 ILE ILE B . n B 1 106 ALA 106 87 87 ALA ALA B . n B 1 107 ASN 107 88 88 ASN ASN B . n B 1 108 TYR 108 89 89 TYR TYR B . n B 1 109 THR 109 90 90 THR THR B . n B 1 110 ASP 110 91 91 ASP ASP B . n B 1 111 ILE 111 92 92 ILE ILE B . n B 1 112 ALA 112 93 93 ALA ALA B . n B 1 113 PRO 113 94 94 PRO PRO B . n B 1 114 VAL 114 95 95 VAL VAL B . n B 1 115 LEU 115 96 96 LEU LEU B . n B 1 116 GLN 116 97 97 GLN GLN B . n B 1 117 ILE 117 98 98 ILE ILE B . n B 1 118 SER 118 99 99 SER SER B . n B 1 119 GLU 119 100 100 GLU GLU B . n B 1 120 VAL 120 101 101 VAL VAL B . n B 1 121 VAL 121 102 102 VAL VAL B . n B 1 122 VAL 122 103 103 VAL VAL B . n B 1 123 GLU 123 104 104 GLU GLU B . n B 1 124 ARG 124 105 105 ARG ARG B . n B 1 125 SER 125 106 106 SER SER B . n B 1 126 ASP 126 107 107 ASP ASP B . n B 1 127 ARG 127 108 108 ARG ARG B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 109 5 EDO EDO A . D 2 EDO 1 109 2 EDO EDO B . E 2 EDO 1 110 3 EDO EDO B . F 2 EDO 1 111 4 EDO EDO B . G 2 EDO 1 112 6 EDO EDO B . H 3 IPA 1 113 1 IPA IPA B . I 4 HOH 1 110 7 HOH HOH A . I 4 HOH 2 111 8 HOH HOH A . I 4 HOH 3 112 9 HOH HOH A . I 4 HOH 4 113 10 HOH HOH A . I 4 HOH 5 114 11 HOH HOH A . I 4 HOH 6 115 12 HOH HOH A . I 4 HOH 7 116 17 HOH HOH A . I 4 HOH 8 117 18 HOH HOH A . I 4 HOH 9 118 23 HOH HOH A . I 4 HOH 10 119 25 HOH HOH A . I 4 HOH 11 120 27 HOH HOH A . I 4 HOH 12 121 31 HOH HOH A . I 4 HOH 13 122 33 HOH HOH A . I 4 HOH 14 123 38 HOH HOH A . I 4 HOH 15 124 39 HOH HOH A . I 4 HOH 16 125 41 HOH HOH A . I 4 HOH 17 126 42 HOH HOH A . I 4 HOH 18 127 44 HOH HOH A . I 4 HOH 19 128 50 HOH HOH A . I 4 HOH 20 129 51 HOH HOH A . I 4 HOH 21 130 55 HOH HOH A . I 4 HOH 22 131 57 HOH HOH A . I 4 HOH 23 132 59 HOH HOH A . I 4 HOH 24 133 62 HOH HOH A . I 4 HOH 25 134 63 HOH HOH A . I 4 HOH 26 135 64 HOH HOH A . I 4 HOH 27 136 65 HOH HOH A . I 4 HOH 28 137 66 HOH HOH A . I 4 HOH 29 138 71 HOH HOH A . I 4 HOH 30 139 74 HOH HOH A . I 4 HOH 31 140 76 HOH HOH A . I 4 HOH 32 141 77 HOH HOH A . I 4 HOH 33 142 80 HOH HOH A . I 4 HOH 34 143 82 HOH HOH A . I 4 HOH 35 144 87 HOH HOH A . I 4 HOH 36 145 88 HOH HOH A . I 4 HOH 37 146 89 HOH HOH A . I 4 HOH 38 147 92 HOH HOH A . I 4 HOH 39 148 93 HOH HOH A . I 4 HOH 40 149 97 HOH HOH A . I 4 HOH 41 150 98 HOH HOH A . I 4 HOH 42 151 99 HOH HOH A . I 4 HOH 43 152 100 HOH HOH A . I 4 HOH 44 153 101 HOH HOH A . I 4 HOH 45 154 105 HOH HOH A . I 4 HOH 46 155 108 HOH HOH A . I 4 HOH 47 156 112 HOH HOH A . I 4 HOH 48 157 114 HOH HOH A . I 4 HOH 49 158 115 HOH HOH A . I 4 HOH 50 159 116 HOH HOH A . I 4 HOH 51 160 117 HOH HOH A . I 4 HOH 52 161 120 HOH HOH A . I 4 HOH 53 162 121 HOH HOH A . I 4 HOH 54 163 123 HOH HOH A . I 4 HOH 55 164 124 HOH HOH A . I 4 HOH 56 165 125 HOH HOH A . I 4 HOH 57 166 127 HOH HOH A . I 4 HOH 58 167 129 HOH HOH A . I 4 HOH 59 168 133 HOH HOH A . I 4 HOH 60 169 134 HOH HOH A . I 4 HOH 61 170 145 HOH HOH A . I 4 HOH 62 171 146 HOH HOH A . I 4 HOH 63 172 147 HOH HOH A . I 4 HOH 64 173 155 HOH HOH A . I 4 HOH 65 174 160 HOH HOH A . I 4 HOH 66 175 164 HOH HOH A . I 4 HOH 67 176 165 HOH HOH A . I 4 HOH 68 177 166 HOH HOH A . I 4 HOH 69 178 167 HOH HOH A . I 4 HOH 70 179 168 HOH HOH A . I 4 HOH 71 180 181 HOH HOH A . I 4 HOH 72 181 188 HOH HOH A . J 4 HOH 1 114 13 HOH HOH B . J 4 HOH 2 115 14 HOH HOH B . J 4 HOH 3 116 15 HOH HOH B . J 4 HOH 4 117 16 HOH HOH B . J 4 HOH 5 118 19 HOH HOH B . J 4 HOH 6 119 20 HOH HOH B . J 4 HOH 7 120 21 HOH HOH B . J 4 HOH 8 121 22 HOH HOH B . J 4 HOH 9 122 24 HOH HOH B . J 4 HOH 10 123 26 HOH HOH B . J 4 HOH 11 124 28 HOH HOH B . J 4 HOH 12 125 29 HOH HOH B . J 4 HOH 13 126 30 HOH HOH B . J 4 HOH 14 127 32 HOH HOH B . J 4 HOH 15 128 34 HOH HOH B . J 4 HOH 16 129 35 HOH HOH B . J 4 HOH 17 130 36 HOH HOH B . J 4 HOH 18 131 37 HOH HOH B . J 4 HOH 19 132 40 HOH HOH B . J 4 HOH 20 133 43 HOH HOH B . J 4 HOH 21 134 45 HOH HOH B . J 4 HOH 22 135 46 HOH HOH B . J 4 HOH 23 136 47 HOH HOH B . J 4 HOH 24 137 48 HOH HOH B . J 4 HOH 25 138 49 HOH HOH B . J 4 HOH 26 139 52 HOH HOH B . J 4 HOH 27 140 53 HOH HOH B . J 4 HOH 28 141 54 HOH HOH B . J 4 HOH 29 142 56 HOH HOH B . J 4 HOH 30 143 58 HOH HOH B . J 4 HOH 31 144 60 HOH HOH B . J 4 HOH 32 145 61 HOH HOH B . J 4 HOH 33 146 67 HOH HOH B . J 4 HOH 34 147 68 HOH HOH B . J 4 HOH 35 148 69 HOH HOH B . J 4 HOH 36 149 70 HOH HOH B . J 4 HOH 37 150 72 HOH HOH B . J 4 HOH 38 151 73 HOH HOH B . J 4 HOH 39 152 75 HOH HOH B . J 4 HOH 40 153 78 HOH HOH B . J 4 HOH 41 154 79 HOH HOH B . J 4 HOH 42 155 81 HOH HOH B . J 4 HOH 43 156 83 HOH HOH B . J 4 HOH 44 157 84 HOH HOH B . J 4 HOH 45 158 85 HOH HOH B . J 4 HOH 46 159 86 HOH HOH B . J 4 HOH 47 160 90 HOH HOH B . J 4 HOH 48 161 91 HOH HOH B . J 4 HOH 49 162 94 HOH HOH B . J 4 HOH 50 163 95 HOH HOH B . J 4 HOH 51 164 96 HOH HOH B . J 4 HOH 52 165 102 HOH HOH B . J 4 HOH 53 166 103 HOH HOH B . J 4 HOH 54 167 104 HOH HOH B . J 4 HOH 55 168 106 HOH HOH B . J 4 HOH 56 169 107 HOH HOH B . J 4 HOH 57 170 109 HOH HOH B . J 4 HOH 58 171 110 HOH HOH B . J 4 HOH 59 172 111 HOH HOH B . J 4 HOH 60 173 113 HOH HOH B . J 4 HOH 61 174 118 HOH HOH B . J 4 HOH 62 175 119 HOH HOH B . J 4 HOH 63 176 122 HOH HOH B . J 4 HOH 64 177 126 HOH HOH B . J 4 HOH 65 178 128 HOH HOH B . J 4 HOH 66 179 130 HOH HOH B . J 4 HOH 67 180 131 HOH HOH B . J 4 HOH 68 181 132 HOH HOH B . J 4 HOH 69 182 135 HOH HOH B . J 4 HOH 70 183 136 HOH HOH B . J 4 HOH 71 184 137 HOH HOH B . J 4 HOH 72 185 138 HOH HOH B . J 4 HOH 73 186 139 HOH HOH B . J 4 HOH 74 187 140 HOH HOH B . J 4 HOH 75 188 141 HOH HOH B . J 4 HOH 76 189 142 HOH HOH B . J 4 HOH 77 190 143 HOH HOH B . J 4 HOH 78 191 144 HOH HOH B . J 4 HOH 79 192 148 HOH HOH B . J 4 HOH 80 193 149 HOH HOH B . J 4 HOH 81 194 150 HOH HOH B . J 4 HOH 82 195 151 HOH HOH B . J 4 HOH 83 196 152 HOH HOH B . J 4 HOH 84 197 153 HOH HOH B . J 4 HOH 85 198 154 HOH HOH B . J 4 HOH 86 199 156 HOH HOH B . J 4 HOH 87 200 157 HOH HOH B . J 4 HOH 88 201 158 HOH HOH B . J 4 HOH 89 202 159 HOH HOH B . J 4 HOH 90 203 161 HOH HOH B . J 4 HOH 91 204 162 HOH HOH B . J 4 HOH 92 205 163 HOH HOH B . J 4 HOH 93 206 169 HOH HOH B . J 4 HOH 94 207 170 HOH HOH B . J 4 HOH 95 208 171 HOH HOH B . J 4 HOH 96 209 172 HOH HOH B . J 4 HOH 97 210 173 HOH HOH B . J 4 HOH 98 211 174 HOH HOH B . J 4 HOH 99 212 175 HOH HOH B . J 4 HOH 100 213 176 HOH HOH B . J 4 HOH 101 214 177 HOH HOH B . J 4 HOH 102 215 178 HOH HOH B . J 4 HOH 103 216 179 HOH HOH B . J 4 HOH 104 217 180 HOH HOH B . J 4 HOH 105 218 182 HOH HOH B . J 4 HOH 106 219 183 HOH HOH B . J 4 HOH 107 220 184 HOH HOH B . J 4 HOH 108 221 185 HOH HOH B . J 4 HOH 109 222 186 HOH HOH B . J 4 HOH 110 223 187 HOH HOH B . J 4 HOH 111 224 189 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 26 A MSE 7 ? MET SELENOMETHIONINE 3 A MSE 45 A MSE 26 ? MET SELENOMETHIONINE 4 A MSE 47 A MSE 28 ? MET SELENOMETHIONINE 5 A MSE 79 A MSE 60 ? MET SELENOMETHIONINE 6 A MSE 94 A MSE 75 ? MET SELENOMETHIONINE 7 B MSE 20 B MSE 1 ? MET SELENOMETHIONINE 8 B MSE 26 B MSE 7 ? MET SELENOMETHIONINE 9 B MSE 45 B MSE 26 ? MET SELENOMETHIONINE 10 B MSE 47 B MSE 28 ? MET SELENOMETHIONINE 11 B MSE 79 B MSE 60 ? MET SELENOMETHIONINE 12 B MSE 94 B MSE 75 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 3020 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site 7 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 18 6 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 18.6500 27.8650 17.4250 -0.1546 -0.2389 -0.2936 0.0158 0.0643 -0.0212 1.8462 2.7472 3.5906 0.1625 -0.1027 -1.3550 -0.1675 0.0263 0.1412 0.1669 0.1360 -0.0708 -0.3657 0.1352 -0.0466 'X-RAY DIFFRACTION' 2 ? refined 17.3510 18.2970 32.5050 -0.2221 -0.2952 -0.3266 0.0230 0.0516 -0.0140 1.3549 2.3830 2.1302 0.2325 -0.0195 -1.1738 -0.0892 0.0352 0.0541 -0.0216 -0.1679 -0.1091 -0.0938 0.1451 -0.0192 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 13 A 127 ? A -6 A 108 'X-RAY DIFFRACTION' ? 2 2 B 17 B 127 ? B -2 B 108 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE CONSTRUCT WAS ENGINEERED WITH THE FOLLOWING MUTATIONS: Q72Y, Q76Y, E77Y. ; # _pdbx_entry_details.entry_id 3BF4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;REMARK 999 SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE CONSTRUCT WAS ENGINEERED WITH REMARK 999 THE FOLLOWING MUTATIONS: Q72Y, Q76Y, E77Y. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id -1 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -144.53 _pdbx_validate_torsion.psi 36.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU -6 ? CG ? A GLU 13 CG 2 1 Y 1 A GLU -6 ? CD ? A GLU 13 CD 3 1 Y 1 A GLU -6 ? OE1 ? A GLU 13 OE1 4 1 Y 1 A GLU -6 ? OE2 ? A GLU 13 OE2 5 1 Y 1 A GLU 12 ? CG ? A GLU 31 CG 6 1 Y 1 A GLU 12 ? CD ? A GLU 31 CD 7 1 Y 1 A GLU 12 ? OE1 ? A GLU 31 OE1 8 1 Y 1 A GLU 12 ? OE2 ? A GLU 31 OE2 9 1 Y 1 A SER 51 ? CB ? A SER 70 CB 10 1 Y 1 A SER 51 ? OG ? A SER 70 OG 11 1 Y 1 B GLN -1 ? CG ? B GLN 18 CG 12 1 Y 1 B GLN -1 ? CD ? B GLN 18 CD 13 1 Y 1 B GLN -1 ? OE1 ? B GLN 18 OE1 14 1 Y 1 B GLN -1 ? NE2 ? B GLN 18 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 B MSE -18 ? B MSE 1 14 1 Y 1 B GLY -17 ? B GLY 2 15 1 Y 1 B SER -16 ? B SER 3 16 1 Y 1 B ASP -15 ? B ASP 4 17 1 Y 1 B LYS -14 ? B LYS 5 18 1 Y 1 B ILE -13 ? B ILE 6 19 1 Y 1 B HIS -12 ? B HIS 7 20 1 Y 1 B HIS -11 ? B HIS 8 21 1 Y 1 B HIS -10 ? B HIS 9 22 1 Y 1 B HIS -9 ? B HIS 10 23 1 Y 1 B HIS -8 ? B HIS 11 24 1 Y 1 B HIS -7 ? B HIS 12 25 1 Y 1 B GLU -6 ? B GLU 13 26 1 Y 1 B ASN -5 ? B ASN 14 27 1 Y 1 B LEU -4 ? B LEU 15 28 1 Y 1 B TYR -3 ? B TYR 16 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'ISOPROPYL ALCOHOL' IPA 4 water HOH #