HEADER UNKNOWN FUNCTION 20-NOV-07 3BF4 TITLE CRYSTAL STRUCTURE OF AN ETHD-LIKE PROTEIN (REUT_B5694) FROM RALSTONIA TITLE 2 EUTROPHA JMP134 AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETHYL TERT-BUTYL ETHER DEGRADATION ETHD PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA JMP134; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 GENE: YP_299883.1, REUT_B5694; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FERREDOXIN-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 3BF4 1 SEQADV REVDAT 7 20-OCT-21 3BF4 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BF4 1 REMARK LINK REVDAT 5 25-OCT-17 3BF4 1 REMARK REVDAT 4 13-JUL-11 3BF4 1 VERSN REVDAT 3 23-MAR-11 3BF4 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BF4 1 VERSN REVDAT 1 04-DEC-07 3BF4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ETHD-LIKE PROTEIN (YP_299883.1) FROM JRNL TITL 2 RALSTONIA EUTROPHA JMP134 AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1154 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1823 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1202 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2470 ; 1.539 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2904 ; 1.317 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 4.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;26.780 ;23.049 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 264 ;10.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2085 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 405 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 303 ; 0.169 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1128 ; 0.135 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 875 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 891 ; 0.071 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.108 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.089 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 1.592 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 461 ; 0.419 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1814 ; 2.134 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 784 ; 3.760 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 653 ; 4.948 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 81 4 REMARK 3 1 B 0 B 81 4 REMARK 3 2 A 82 A 108 6 REMARK 3 2 B 82 B 108 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1027 ; 0.330 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 324 ; 0.480 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1027 ; 0.770 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 324 ; 1.850 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -6 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6500 27.8650 17.4250 REMARK 3 T TENSOR REMARK 3 T11: -0.1546 T22: -0.2389 REMARK 3 T33: -0.2936 T12: 0.0158 REMARK 3 T13: 0.0643 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.8462 L22: 2.7472 REMARK 3 L33: 3.5906 L12: 0.1625 REMARK 3 L13: -0.1027 L23: -1.3550 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: 0.1669 S13: 0.1360 REMARK 3 S21: -0.3657 S22: 0.0263 S23: -0.0708 REMARK 3 S31: 0.1352 S32: -0.0466 S33: 0.1412 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3510 18.2970 32.5050 REMARK 3 T TENSOR REMARK 3 T11: -0.2221 T22: -0.2952 REMARK 3 T33: -0.3266 T12: 0.0230 REMARK 3 T13: 0.0516 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.3549 L22: 2.3830 REMARK 3 L33: 2.1302 L12: 0.2325 REMARK 3 L13: -0.0195 L23: -1.1738 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -0.0216 S13: -0.1679 REMARK 3 S21: -0.0938 S22: 0.0352 S23: -0.1091 REMARK 3 S31: 0.1451 S32: -0.0192 S33: 0.0541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. EDO AND IPA MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTIONS REMARK 3 ARE MODELED. REMARK 3 5. THERE ARE SOME UNMODELED DENSITIES NEAR RESIDUES B51-52. REMARK 4 REMARK 4 3BF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045441. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9184, 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.761 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 15.0% GLYCEROL, 8.5% REMARK 280 ISOPROPANOL, 17.0% PEG 4000, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.27000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.15250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.27000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.71750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.27000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.15250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.27000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -6 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 SER A 51 CB OG REMARK 470 GLN B -1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A -1 36.24 -144.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381874 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE CONSTRUCT WAS ENGINEERED WITH REMARK 999 THE FOLLOWING MUTATIONS: Q72Y, Q76Y, E77Y. DBREF 3BF4 A 1 108 UNP Q46P95 Q46P95_RALEJ 1 108 DBREF 3BF4 B 1 108 UNP Q46P95 Q46P95_RALEJ 1 108 SEQADV 3BF4 MSE A -18 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLY A -17 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 SER A -16 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 ASP A -15 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 LYS A -14 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 ILE A -13 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS A -12 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS A -11 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS A -10 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS A -9 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS A -8 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS A -7 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLU A -6 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 ASN A -5 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 LEU A -4 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 TYR A -3 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 PHE A -2 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLN A -1 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLY A 0 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 TYR A 72 UNP Q46P95 GLN 72 ENGINEERED MUTATION SEQADV 3BF4 TYR A 76 UNP Q46P95 GLN 76 ENGINEERED MUTATION SEQADV 3BF4 TYR A 77 UNP Q46P95 GLU 77 ENGINEERED MUTATION SEQADV 3BF4 MSE B -18 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLY B -17 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 SER B -16 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 ASP B -15 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 LYS B -14 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 ILE B -13 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS B -12 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS B -11 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS B -10 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS B -9 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS B -8 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 HIS B -7 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLU B -6 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 ASN B -5 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 LEU B -4 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 TYR B -3 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 PHE B -2 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLN B -1 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 GLY B 0 UNP Q46P95 EXPRESSION TAG SEQADV 3BF4 TYR B 72 UNP Q46P95 GLN 72 ENGINEERED MUTATION SEQADV 3BF4 TYR B 76 UNP Q46P95 GLN 76 ENGINEERED MUTATION SEQADV 3BF4 TYR B 77 UNP Q46P95 GLU 77 ENGINEERED MUTATION SEQRES 1 A 127 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 127 ASN LEU TYR PHE GLN GLY MSE ILE LYS VAL ASN VAL MSE SEQRES 3 A 127 TYR PRO TYR THR GLU GLY ALA ARG PHE ASP HIS ALA TYR SEQRES 4 A 127 TYR CYS ASP ARG HIS MSE PRO MSE VAL LYS ALA ARG LEU SEQRES 5 A 127 GLY SER ALA CYS ALA TYR TYR THR VAL GLU LYS GLY LEU SEQRES 6 A 127 ALA GLY SER ALA SER GLY ALA PRO PRO ALA PHE VAL ALA SEQRES 7 A 127 MSE CYS ALA PHE ILE CYS ASP SER ALA GLU ASN PHE TYR SEQRES 8 A 127 ALA ALA MSE TYR TYR HIS GLY ALA GLU ILE LEU GLY ASP SEQRES 9 A 127 ILE ALA ASN TYR THR ASP ILE ALA PRO VAL LEU GLN ILE SEQRES 10 A 127 SER GLU VAL VAL VAL GLU ARG SER ASP ARG SEQRES 1 B 127 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 127 ASN LEU TYR PHE GLN GLY MSE ILE LYS VAL ASN VAL MSE SEQRES 3 B 127 TYR PRO TYR THR GLU GLY ALA ARG PHE ASP HIS ALA TYR SEQRES 4 B 127 TYR CYS ASP ARG HIS MSE PRO MSE VAL LYS ALA ARG LEU SEQRES 5 B 127 GLY SER ALA CYS ALA TYR TYR THR VAL GLU LYS GLY LEU SEQRES 6 B 127 ALA GLY SER ALA SER GLY ALA PRO PRO ALA PHE VAL ALA SEQRES 7 B 127 MSE CYS ALA PHE ILE CYS ASP SER ALA GLU ASN PHE TYR SEQRES 8 B 127 ALA ALA MSE TYR TYR HIS GLY ALA GLU ILE LEU GLY ASP SEQRES 9 B 127 ILE ALA ASN TYR THR ASP ILE ALA PRO VAL LEU GLN ILE SEQRES 10 B 127 SER GLU VAL VAL VAL GLU ARG SER ASP ARG MODRES 3BF4 MSE A 1 MET SELENOMETHIONINE MODRES 3BF4 MSE A 7 MET SELENOMETHIONINE MODRES 3BF4 MSE A 26 MET SELENOMETHIONINE MODRES 3BF4 MSE A 28 MET SELENOMETHIONINE MODRES 3BF4 MSE A 60 MET SELENOMETHIONINE MODRES 3BF4 MSE A 75 MET SELENOMETHIONINE MODRES 3BF4 MSE B 1 MET SELENOMETHIONINE MODRES 3BF4 MSE B 7 MET SELENOMETHIONINE MODRES 3BF4 MSE B 26 MET SELENOMETHIONINE MODRES 3BF4 MSE B 28 MET SELENOMETHIONINE MODRES 3BF4 MSE B 60 MET SELENOMETHIONINE MODRES 3BF4 MSE B 75 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 7 8 HET MSE A 26 8 HET MSE A 28 8 HET MSE A 60 8 HET MSE A 75 8 HET MSE B 1 8 HET MSE B 7 8 HET MSE B 26 8 HET MSE B 28 8 HET MSE B 60 8 HET MSE B 75 8 HET EDO A 109 4 HET EDO B 109 4 HET EDO B 110 4 HET EDO B 111 4 HET EDO B 112 4 HET IPA B 113 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM IPA ISOPROPYL ALCOHOL HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 IPA C3 H8 O FORMUL 9 HOH *183(H2 O) HELIX 1 1 ASP A 17 ARG A 24 1 8 HELIX 2 2 ARG A 24 GLY A 34 1 11 HELIX 3 3 SER A 35 CYS A 37 5 3 HELIX 4 4 SER A 67 ASP A 85 1 19 HELIX 5 5 ILE A 86 TYR A 89 5 4 HELIX 6 6 ASP B 17 ARG B 24 1 8 HELIX 7 7 ARG B 24 GLY B 34 1 11 HELIX 8 8 SER B 35 CYS B 37 5 3 HELIX 9 9 ALA B 68 HIS B 78 1 11 HELIX 10 10 HIS B 78 ILE B 86 1 9 HELIX 11 11 ALA B 87 TYR B 89 5 3 SHEET 1 A 9 ILE A 2 PRO A 9 0 SHEET 2 A 9 PHE A 57 CYS A 65 -1 O CYS A 65 N ILE A 2 SHEET 3 A 9 TYR A 39 ALA A 47 -1 N TYR A 39 O ILE A 64 SHEET 4 A 9 VAL B 95 VAL B 103 -1 O GLU B 100 N LYS A 44 SHEET 5 A 9 GLN B -1 PRO B 9 -1 N ASN B 5 O GLN B 97 SHEET 6 A 9 PHE B 57 SER B 67 -1 O CYS B 65 N ILE B 2 SHEET 7 A 9 TYR B 39 GLY B 48 -1 N TYR B 39 O ILE B 64 SHEET 8 A 9 VAL A 95 VAL A 103 -1 N GLU A 100 O LYS B 44 SHEET 9 A 9 ILE A 2 PRO A 9 -1 N ASN A 5 O GLN A 97 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C VAL A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N TYR A 8 1555 1555 1.34 LINK C HIS A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N PRO A 27 1555 1555 1.35 LINK C PRO A 27 N MSE A 28 1555 1555 1.34 LINK C MSE A 28 N VAL A 29 1555 1555 1.34 LINK C ALA A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N CYS A 61 1555 1555 1.33 LINK C ALA A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N TYR A 76 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C VAL B 6 N MSE B 7 1555 1555 1.33 LINK C MSE B 7 N TYR B 8 1555 1555 1.34 LINK C HIS B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N PRO B 27 1555 1555 1.35 LINK C PRO B 27 N MSE B 28 1555 1555 1.33 LINK C MSE B 28 N VAL B 29 1555 1555 1.33 LINK C ALA B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N CYS B 61 1555 1555 1.33 LINK C ALA B 74 N MSE B 75 1555 1555 1.34 LINK C MSE B 75 N TYR B 76 1555 1555 1.33 SITE 1 AC1 7 THR A 41 HOH A 128 LYS B 3 TYR B 39 SITE 2 AC1 7 GLU B 104 HOH B 199 HOH B 204 SITE 1 AC2 8 TYR A 76 VAL B 6 TYR B 8 TYR B 21 SITE 2 AC2 8 HIS B 25 CYS B 61 ILE B 82 TYR B 89 SITE 1 AC3 2 ASP B 66 GLU B 104 SITE 1 AC4 6 VAL A 6 TYR A 8 TYR A 21 HIS A 25 SITE 2 AC4 6 CYS A 61 TYR A 89 SITE 1 AC5 5 GLU B 81 ALA B 87 ASN B 88 HOH B 211 SITE 2 AC5 5 HOH B 212 SITE 1 AC6 1 HOH B 171 CRYST1 74.540 74.540 98.870 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010114 0.00000