HEADER UNKNOWN FUNCTION 21-NOV-07 3BFM TITLE CRYSTAL STRUCTURE OF A BIOTIN PROTEIN LIGASE-LIKE PROTEIN OF UNKNOWN TITLE 2 FUNCTION (TM1040_0394) FROM SILICIBACTER SP. TM1040 AT 1.70 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN PROTEIN LIGASE-LIKE PROTEIN OF UNKNOWN FUNCTION; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER SP.; SOURCE 3 ORGANISM_TAXID: 292414; SOURCE 4 STRAIN: TM1040; SOURCE 5 GENE: YP_612389.1, TM1040_0394; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BFM 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3BFM 1 REMARK LINK REVDAT 5 25-OCT-17 3BFM 1 REMARK REVDAT 4 13-JUL-11 3BFM 1 VERSN REVDAT 3 23-MAR-11 3BFM 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BFM 1 VERSN REVDAT 1 04-DEC-07 3BFM 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF BIOTIN PROTEIN LIGASE-LIKE PROTEIN OF JRNL TITL 2 UNKNOWN FUNCTION (YP_612389.1) FROM SILICIBACTER SP. TM1040 JRNL TITL 3 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1659 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1704 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.515 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1803 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1189 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2477 ; 1.458 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2912 ; 0.931 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;32.898 ;23.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;13.139 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2045 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 344 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1261 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 869 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 970 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.055 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 20 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.006 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 2.140 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 477 ; 0.560 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1865 ; 3.237 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 701 ; 5.148 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 604 ; 7.548 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR REMARK 3 THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. THE LOOP BETWEEN RESIDUES 134-138 HAS POOR DENSITY. REMARK 3 4. CALCIUM IONS AND PEG 400 (2PE) ARE PRESENT IN THE REMARK 3 CRYSTALLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 3BFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 0.97953, 0.97939 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.553 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.330 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M CA(OAC)2, 40.0% PEG REMARK 280 400, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.38000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.31059 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.07076 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 236 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 239 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 250 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 234 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 28 CD OE1 NE2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 GLU A 179 CD OE1 OE2 REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 GLN A 233 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 103 76.35 -156.27 REMARK 500 GLU A 177 38.04 -93.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 237 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 235 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 20 O REMARK 620 2 ASP A 21 OD1 78.8 REMARK 620 3 GLU A 42 OE1 82.8 84.3 REMARK 620 4 GLU A 42 OE2 110.0 133.3 53.3 REMARK 620 5 HOH A 246 O 164.4 86.6 101.4 84.1 REMARK 620 6 HOH A 249 O 79.2 148.6 114.7 75.7 111.8 REMARK 620 7 HOH A 262 O 88.7 79.0 162.5 144.2 83.1 78.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 236 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 36 O REMARK 620 2 HOH A 239 O 76.8 REMARK 620 3 HOH A 242 O 90.6 76.7 REMARK 620 4 HOH A 270 O 75.7 141.3 76.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 237 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377806 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BFM A 1 234 UNP Q1GJN9 Q1GJN9_SILST 1 234 SEQADV 3BFM GLY A 0 UNP Q1GJN9 EXPRESSION TAG SEQRES 1 A 235 GLY MSE SER GLU THR ILE THR PHE PRO PRO LEU MSE THR SEQRES 2 A 235 GLY GLU ALA ALA GLY PRO GLY GLN ASP PRO PHE ASP LEU SEQRES 3 A 235 ALA CYS GLN LYS ALA GLU LEU GLY VAL ASP ALA GLY LEU SEQRES 4 A 235 VAL VAL TYR GLU LEU GLY THR ASP VAL LEU ARG ALA ALA SEQRES 5 A 235 LEU VAL LEU ALA PRO GLU VAL PRO LEU ALA LYS ALA MSE SEQRES 6 A 235 ALA MSE LEU PRO VAL CYS GLY VAL GLY PHE GLN ASN ALA SEQRES 7 A 235 LEU GLY ALA LEU ALA PRO PRO GLU VAL ALA VAL HIS LEU SEQRES 8 A 235 ASP TRP ASN GLY ALA LEU ARG ILE ASN GLY ALA ARG CYS SEQRES 9 A 235 GLY ARG LEU ARG ILE ALA ALA SER THR ASP ASP PRO ASP SEQRES 10 A 235 THR GLN PRO ASP TRP LEU VAL VAL GLY LEU ASP LEU PRO SEQRES 11 A 235 LEU TRP PRO GLU GLY ASP GLY GLY GLU THR PRO ASP GLU SEQRES 12 A 235 THR ALA LEU TYR ALA GLU GLY CYS ALA ASP VAL ALA ALA SEQRES 13 A 235 PRO ARG LEU LEU GLU SER TRP ALA ARG HIS CYS LEU HIS SEQRES 14 A 235 TRP ILE ASN ARG TRP ASP GLU GLY GLU LEU GLU THR ILE SEQRES 15 A 235 HIS GLY GLU TRP ARG GLY LEU ALA HIS GLY MSE GLY GLU SEQRES 16 A 235 ALA ARG THR GLU ALA GLY ARG SER GLY THR PHE LEU GLY SEQRES 17 A 235 VAL ASP GLU ASP PHE GLY MSE LEU LEU ARG ASP GLU THR SEQRES 18 A 235 THR THR HIS LEU ILE PRO LEU THR THR VAL LEU VAL GLN SEQRES 19 A 235 ASP MODRES 3BFM MSE A 11 MET SELENOMETHIONINE MODRES 3BFM MSE A 64 MET SELENOMETHIONINE MODRES 3BFM MSE A 66 MET SELENOMETHIONINE MODRES 3BFM MSE A 192 MET SELENOMETHIONINE MODRES 3BFM MSE A 214 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 64 8 HET MSE A 66 8 HET MSE A 192 8 HET MSE A 214 8 HET CA A 235 1 HET CA A 236 1 HET 2PE A 237 12 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 2PE C18 H38 O10 FORMUL 5 HOH *169(H2 O) HELIX 1 1 ASP A 21 LEU A 32 1 12 HELIX 2 2 PRO A 59 MSE A 64 1 6 HELIX 3 3 ALA A 65 ALA A 82 1 18 HELIX 4 4 ALA A 144 GLU A 148 5 5 HELIX 5 5 ALA A 154 GLU A 175 1 22 HELIX 6 6 GLU A 177 ALA A 189 1 13 HELIX 7 7 PRO A 226 LEU A 231 5 6 SHEET 1 A 7 THR A 12 ALA A 15 0 SHEET 2 A 7 LEU A 38 LEU A 43 1 O VAL A 39 N THR A 12 SHEET 3 A 7 VAL A 47 LEU A 54 -1 O ARG A 49 N GLU A 42 SHEET 4 A 7 LEU A 122 PRO A 129 -1 O LEU A 122 N LEU A 54 SHEET 5 A 7 ALA A 101 ALA A 110 -1 N ARG A 107 O GLY A 125 SHEET 6 A 7 ALA A 95 ILE A 98 -1 N ILE A 98 O ALA A 101 SHEET 7 A 7 VAL A 88 LEU A 90 -1 N HIS A 89 O ARG A 97 SHEET 1 B 4 ALA A 195 GLU A 198 0 SHEET 2 B 4 ARG A 201 VAL A 208 -1 O ARG A 201 N GLU A 198 SHEET 3 B 4 MSE A 214 ARG A 217 -1 O LEU A 215 N GLY A 207 SHEET 4 B 4 THR A 222 ILE A 225 -1 O HIS A 223 N LEU A 216 LINK C LEU A 10 N MSE A 11 1555 1555 1.32 LINK C MSE A 11 N THR A 12 1555 1555 1.33 LINK C ALA A 63 N MSE A 64 1555 1555 1.34 LINK C MSE A 64 N ALA A 65 1555 1555 1.34 LINK C ALA A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N LEU A 67 1555 1555 1.34 LINK C GLY A 191 N MSE A 192 1555 1555 1.32 LINK C MSE A 192 N GLY A 193 1555 1555 1.32 LINK C GLY A 213 N MSE A 214 1555 1555 1.32 LINK C MSE A 214 N LEU A 215 1555 1555 1.32 LINK O GLN A 20 CA CA A 235 1555 1555 2.34 LINK OD1 ASP A 21 CA CA A 235 1555 1555 2.35 LINK O ALA A 36 CA CA A 236 1555 1555 2.43 LINK OE1 GLU A 42 CA CA A 235 1555 1555 2.47 LINK OE2 GLU A 42 CA CA A 235 1555 1555 2.38 LINK CA CA A 235 O HOH A 246 1555 1555 2.38 LINK CA CA A 235 O HOH A 249 1555 1555 2.36 LINK CA CA A 235 O HOH A 262 1555 1555 2.45 LINK CA CA A 236 O HOH A 239 1555 1555 2.45 LINK CA CA A 236 O HOH A 242 1555 1555 2.42 LINK CA CA A 236 O HOH A 270 1555 1555 2.46 SITE 1 AC1 6 GLN A 20 ASP A 21 GLU A 42 HOH A 246 SITE 2 AC1 6 HOH A 249 HOH A 262 SITE 1 AC2 4 ALA A 36 HOH A 239 HOH A 242 HOH A 270 SITE 1 AC3 6 GLU A 14 ALA A 15 TYR A 41 LEU A 215 SITE 2 AC3 6 HOH A 311 HOH A 406 CRYST1 86.760 36.560 71.000 90.00 99.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011526 0.000000 0.001883 0.00000 SCALE2 0.000000 0.027352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014271 0.00000