HEADER TRANSFERASE 23-NOV-07 3BFV TITLE CRYSTAL STRUCTURE OF THE CHIMERICAL PROTEIN CAPAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN CAPA1, PROTEIN TYROSINE KINASE,PROTEIN COMPND 3 TYROSINE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: FUSION PROTEIN CONSISTS OF UNP RESIDUES 194-222 (P72367) COMPND 6 AND 1-230 (A8YPQ5) OF CAPA1 AND CAPB2,FUSION PROTEIN CONSISTS OF UNP COMPND 7 RESIDUES 194-222 (A8YPQ6) AND 1-230 (A8YPQ5) OF CAPA1 AND CAPB2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CAP8A, CAPB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CHIMERICAL PROTEIN, P-LOOP PROTEIN, CAPSULE BIOGENESIS/DEGRADATION, KEYWDS 2 EXOPOLYSACCHARIDE SYNTHESIS, MEMBRANE, TRANSMEMBRANE, VIRULENCE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.OLIVARES-ILLANA,P.MEYER,S.MORERA,S.NESSLER REVDAT 6 30-AUG-23 3BFV 1 REMARK LINK REVDAT 5 27-JUN-18 3BFV 1 SOURCE REVDAT 4 13-JUN-18 3BFV 1 COMPND SOURCE DBREF SEQADV REVDAT 3 09-AUG-17 3BFV 1 SOURCE REVDAT 2 24-FEB-09 3BFV 1 VERSN REVDAT 1 24-JUN-08 3BFV 0 JRNL AUTH V.OLIVARES-ILLANA,P.MEYER,E.BECHET,V.GUEGUEN-CHAIGNON, JRNL AUTH 2 D.SOULAT,S.LAZEREG-RIQUIER,I.MIJAKOVIC,J.DEUTSCHER, JRNL AUTH 3 A.J.COZZONE,O.LAPREVOTE,S.MORERA,C.GRANGEASSE,S.NESSLER JRNL TITL STRUCTURAL BASIS FOR THE REGULATION MECHANISM OF THE JRNL TITL 2 TYROSINE KINASE CAPB FROM STAPHYLOCOCCUS AUREUS. JRNL REF PLOS BIOL. V. 6 E143 2008 JRNL REFN ISSN 1544-9173 JRNL PMID 18547145 JRNL DOI 10.1371/JOURNAL.PBIO.0060143 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2054 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3850 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5242 ; 1.151 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;35.772 ;25.802 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;12.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2842 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1827 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2731 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 363 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2484 ; 0.586 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3934 ; 0.935 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1532 ; 1.421 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1308 ; 2.231 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-07; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.80 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : ESRF; NULL REMARK 200 BEAMLINE : ID23-2; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873; NULL REMARK 200 MONOCHROMATOR : 0.9; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 9.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 1ION REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23 % PEG 1000, 0.1 M TRIS-HCL, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 8.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 182 REMARK 465 ARG A 183 REMARK 465 GLY A 184 REMARK 465 SER A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 GLY A 192 REMARK 465 SER A 193 REMARK 465 VAL A 194 REMARK 465 ILE A 195 REMARK 465 PHE A 196 REMARK 465 ASP A 1216 REMARK 465 LYS A 1217 REMARK 465 SER A 1218 REMARK 465 ALA A 1219 REMARK 465 SER A 1220 REMARK 465 TYR A 1221 REMARK 465 TYR A 1222 REMARK 465 ALA A 1223 REMARK 465 TYR A 1224 REMARK 465 TYR A 1225 REMARK 465 GLY A 1226 REMARK 465 THR A 1227 REMARK 465 ASP A 1228 REMARK 465 GLU A 1229 REMARK 465 SER A 1230 REMARK 465 MET B 182 REMARK 465 ARG B 183 REMARK 465 GLY B 184 REMARK 465 SER B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 GLY B 192 REMARK 465 SER B 193 REMARK 465 VAL B 194 REMARK 465 ILE B 195 REMARK 465 PHE B 196 REMARK 465 ASP B 1216 REMARK 465 LYS B 1217 REMARK 465 SER B 1218 REMARK 465 ALA B 1219 REMARK 465 SER B 1220 REMARK 465 TYR B 1221 REMARK 465 TYR B 1222 REMARK 465 ALA B 1223 REMARK 465 TYR B 1224 REMARK 465 TYR B 1225 REMARK 465 GLY B 1226 REMARK 465 THR B 1227 REMARK 465 ASP B 1228 REMARK 465 GLU B 1229 REMARK 465 SER B 1230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B1117 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1038 31.87 39.34 REMARK 500 LYS B 198 51.64 -116.78 REMARK 500 PRO B1037 47.23 -67.03 REMARK 500 ASP B1038 47.39 132.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 296 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 301 O3B REMARK 620 2 SER A1056 OG 90.9 REMARK 620 3 HOH A1347 O 169.0 82.6 REMARK 620 4 HOH A1351 O 88.6 94.3 83.1 REMARK 620 5 HOH A1381 O 105.1 160.7 83.1 96.7 REMARK 620 6 HOH A1418 O 95.1 83.4 92.9 175.6 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 276 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 301 O3B REMARK 620 2 SER B1056 OG 90.9 REMARK 620 3 HOH B1334 O 92.7 81.4 REMARK 620 4 HOH B1335 O 169.9 84.7 95.5 REMARK 620 5 HOH B1347 O 88.2 95.4 176.6 83.2 REMARK 620 6 HOH B1399 O 103.6 161.2 85.9 82.8 97.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VED RELATED DB: PDB REMARK 900 A MUTANT OF THIS PROTEIN DBREF 3BFV A 194 222 UNP P72367 CAP8A_STAAU 194 222 DBREF 3BFV A 1001 1230 UNP A8YPQ5 A8YPQ5_STAAU 1 230 DBREF 3BFV B 194 222 UNP P72367 CAP8A_STAAU 194 222 DBREF 3BFV B 1001 1230 UNP A8YPQ5 A8YPQ5_STAAU 1 230 SEQADV 3BFV MET A 182 UNP P72367 INITIATING METHIONINE SEQADV 3BFV ARG A 183 UNP P72367 EXPRESSION TAG SEQADV 3BFV GLY A 184 UNP P72367 EXPRESSION TAG SEQADV 3BFV SER A 185 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS A 186 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS A 187 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS A 188 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS A 189 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS A 190 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS A 191 UNP P72367 EXPRESSION TAG SEQADV 3BFV GLY A 192 UNP P72367 EXPRESSION TAG SEQADV 3BFV SER A 193 UNP P72367 EXPRESSION TAG SEQADV 3BFV MET B 182 UNP P72367 INITIATING METHIONINE SEQADV 3BFV ARG B 183 UNP P72367 EXPRESSION TAG SEQADV 3BFV GLY B 184 UNP P72367 EXPRESSION TAG SEQADV 3BFV SER B 185 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS B 186 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS B 187 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS B 188 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS B 189 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS B 190 UNP P72367 EXPRESSION TAG SEQADV 3BFV HIS B 191 UNP P72367 EXPRESSION TAG SEQADV 3BFV GLY B 192 UNP P72367 EXPRESSION TAG SEQADV 3BFV SER B 193 UNP P72367 EXPRESSION TAG SEQRES 1 A 271 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 A 271 ILE PHE ASP LYS ARG ILE LYS ASP GLU GLU ASP VAL GLU SEQRES 3 A 271 LYS GLU LEU GLY LEU PRO VAL LEU GLY SER ILE GLN LYS SEQRES 4 A 271 PHE ASN MET THR ASN THR ARG ARG SER THR SER SER LEU SEQRES 5 A 271 ILE VAL HIS GLU GLN PRO LYS SER PRO ILE SER GLU LYS SEQRES 6 A 271 PHE ARG GLY ILE ARG SER ASN ILE MET PHE ALA ASN PRO SEQRES 7 A 271 ASP SER ALA VAL GLN SER ILE VAL ILE THR SER GLU ALA SEQRES 8 A 271 PRO GLY ALA GLY LYS SER THR ILE ALA ALA ASN LEU ALA SEQRES 9 A 271 VAL ALA TYR ALA GLN ALA GLY TYR LYS THR LEU ILE VAL SEQRES 10 A 271 ASP GLY ASP MET ARG LYS PRO THR GLN HIS TYR ILE PHE SEQRES 11 A 271 ASN LEU PRO ASN ASN GLU GLY LEU SER SER LEU LEU LEU SEQRES 12 A 271 ASN TRP SER THR TYR GLN ASP SER ILE ILE SER THR GLU SEQRES 13 A 271 ILE GLU ASP LEU ASP VAL LEU THR SER GLY PRO ILE PRO SEQRES 14 A 271 PRO ASN PRO SER GLU LEU ILE THR SER ARG ALA PHE ALA SEQRES 15 A 271 ASN LEU TYR ASP THR LEU LEU MET ASN TYR ASN PHE VAL SEQRES 16 A 271 ILE ILE ASP THR PRO PRO VAL ASN THR VAL THR ASP ALA SEQRES 17 A 271 GLN LEU PHE SER LYS PHE THR GLY ASN VAL VAL TYR VAL SEQRES 18 A 271 VAL ASN SER GLU ASN ASN ASN LYS ASP GLU VAL LYS LYS SEQRES 19 A 271 GLY LYS GLU LEU ILE GLU ALA THR GLY ALA LYS LEU LEU SEQRES 20 A 271 GLY VAL VAL LEU ASN ARG MET PRO LYS ASP LYS SER ALA SEQRES 21 A 271 SER TYR TYR ALA TYR TYR GLY THR ASP GLU SER SEQRES 1 B 271 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 B 271 ILE PHE ASP LYS ARG ILE LYS ASP GLU GLU ASP VAL GLU SEQRES 3 B 271 LYS GLU LEU GLY LEU PRO VAL LEU GLY SER ILE GLN LYS SEQRES 4 B 271 PHE ASN MET THR ASN THR ARG ARG SER THR SER SER LEU SEQRES 5 B 271 ILE VAL HIS GLU GLN PRO LYS SER PRO ILE SER GLU LYS SEQRES 6 B 271 PHE ARG GLY ILE ARG SER ASN ILE MET PHE ALA ASN PRO SEQRES 7 B 271 ASP SER ALA VAL GLN SER ILE VAL ILE THR SER GLU ALA SEQRES 8 B 271 PRO GLY ALA GLY LYS SER THR ILE ALA ALA ASN LEU ALA SEQRES 9 B 271 VAL ALA TYR ALA GLN ALA GLY TYR LYS THR LEU ILE VAL SEQRES 10 B 271 ASP GLY ASP MET ARG LYS PRO THR GLN HIS TYR ILE PHE SEQRES 11 B 271 ASN LEU PRO ASN ASN GLU GLY LEU SER SER LEU LEU LEU SEQRES 12 B 271 ASN TRP SER THR TYR GLN ASP SER ILE ILE SER THR GLU SEQRES 13 B 271 ILE GLU ASP LEU ASP VAL LEU THR SER GLY PRO ILE PRO SEQRES 14 B 271 PRO ASN PRO SER GLU LEU ILE THR SER ARG ALA PHE ALA SEQRES 15 B 271 ASN LEU TYR ASP THR LEU LEU MET ASN TYR ASN PHE VAL SEQRES 16 B 271 ILE ILE ASP THR PRO PRO VAL ASN THR VAL THR ASP ALA SEQRES 17 B 271 GLN LEU PHE SER LYS PHE THR GLY ASN VAL VAL TYR VAL SEQRES 18 B 271 VAL ASN SER GLU ASN ASN ASN LYS ASP GLU VAL LYS LYS SEQRES 19 B 271 GLY LYS GLU LEU ILE GLU ALA THR GLY ALA LYS LEU LEU SEQRES 20 B 271 GLY VAL VAL LEU ASN ARG MET PRO LYS ASP LYS SER ALA SEQRES 21 B 271 SER TYR TYR ALA TYR TYR GLY THR ASP GLU SER HET MG A 296 1 HET ADP A 301 27 HET MG B 276 1 HET ADP B 301 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *418(H2 O) HELIX 1 1 ASP A 202 GLY A 211 1 10 HELIX 2 2 LEU A 1011 GLN A 1016 1 6 HELIX 3 3 SER A 1019 ALA A 1035 1 17 HELIX 4 4 GLY A 1054 ALA A 1069 1 16 HELIX 5 5 THR A 1084 PHE A 1089 1 6 HELIX 6 6 GLY A 1096 LEU A 1102 1 7 HELIX 7 7 THR A 1106 SER A 1110 1 5 HELIX 8 8 ASN A 1130 THR A 1136 1 7 HELIX 9 9 SER A 1137 TYR A 1151 1 15 HELIX 10 10 THR A 1165 GLY A 1175 1 11 HELIX 11 11 ASN A 1187 ALA A 1200 1 14 HELIX 12 12 ASP B 202 LEU B 210 1 9 HELIX 13 13 LEU B 1011 GLN B 1016 1 6 HELIX 14 14 SER B 1019 ALA B 1035 1 17 HELIX 15 15 GLY B 1054 ALA B 1069 1 16 HELIX 16 16 THR B 1084 PHE B 1089 1 6 HELIX 17 17 GLY B 1096 LEU B 1102 1 7 HELIX 18 18 THR B 1106 SER B 1110 1 5 HELIX 19 19 ASN B 1130 THR B 1136 1 7 HELIX 20 20 SER B 1137 TYR B 1151 1 15 HELIX 21 21 THR B 1165 GLY B 1175 1 11 HELIX 22 22 ASN B 1187 ALA B 1200 1 14 SHEET 1 A 8 VAL A 214 GLN A 219 0 SHEET 2 A 8 LYS A1204 MET A1213 1 O LEU A1210 N ILE A 218 SHEET 3 A 8 ASN A1176 ASN A1182 1 N VAL A1181 O ASN A1211 SHEET 4 A 8 SER A1043 THR A1047 1 N THR A1047 O VAL A1180 SHEET 5 A 8 PHE A1153 ASP A1157 1 O ILE A1156 N ILE A1044 SHEET 6 A 8 THR A1073 ASP A1077 1 N VAL A1076 O ILE A1155 SHEET 7 A 8 LEU A1119 LEU A1122 1 O LEU A1122 N ASP A1077 SHEET 8 A 8 ILE A1111 SER A1113 -1 N ILE A1112 O VAL A1121 SHEET 1 B 8 VAL B 214 GLN B 219 0 SHEET 2 B 8 LYS B1204 MET B1213 1 O LEU B1210 N ILE B 218 SHEET 3 B 8 ASN B1176 ASN B1182 1 N VAL B1181 O ASN B1211 SHEET 4 B 8 SER B1043 SER B1048 1 N THR B1047 O VAL B1180 SHEET 5 B 8 PHE B1153 ASP B1157 1 O ILE B1156 N ILE B1044 SHEET 6 B 8 THR B1073 ASP B1077 1 N VAL B1076 O ILE B1155 SHEET 7 B 8 LEU B1119 LEU B1122 1 O LEU B1122 N ASP B1077 SHEET 8 B 8 ILE B1111 SER B1113 -1 N ILE B1112 O VAL B1121 LINK MG MG A 296 O3B ADP A 301 1555 1555 2.13 LINK MG MG A 296 OG SER A1056 1555 1555 2.18 LINK MG MG A 296 O HOH A1347 1555 1555 2.23 LINK MG MG A 296 O HOH A1351 1555 1555 2.16 LINK MG MG A 296 O HOH A1381 1555 1555 2.07 LINK MG MG A 296 O HOH A1418 1555 1555 2.17 LINK MG MG B 276 O3B ADP B 301 1555 1555 2.11 LINK MG MG B 276 OG SER B1056 1555 1555 2.21 LINK MG MG B 276 O HOH B1334 1555 1555 2.23 LINK MG MG B 276 O HOH B1335 1555 1555 2.20 LINK MG MG B 276 O HOH B1347 1555 1555 2.21 LINK MG MG B 276 O HOH B1399 1555 1555 2.08 CISPEP 1 ASP B 197 LYS B 198 0 -10.31 SITE 1 AC1 5 SER A1056 HOH A1347 HOH A1351 HOH A1381 SITE 2 AC1 5 HOH A1418 SITE 1 AC2 5 SER B1056 HOH B1334 HOH B1335 HOH B1347 SITE 2 AC2 5 HOH B1399 SITE 1 AC3 20 GLN A 219 LYS A 220 PHE A 221 GLY A1052 SITE 2 AC3 20 ALA A1053 GLY A1054 LYS A1055 SER A1056 SITE 3 AC3 20 THR A1057 ASN A1211 ARG A1212 HOH A1260 SITE 4 AC3 20 HOH A1351 HOH A1360 HOH A1378 HOH A1383 SITE 5 AC3 20 GLN B1016 HOH B1393 HOH B1401 HOH B1418 SITE 1 AC4 21 GLU A1015 GLN A1016 HOH A1416 HOH A1437 SITE 2 AC4 21 GLN B 219 LYS B 220 PHE B 221 GLY B1052 SITE 3 AC4 21 ALA B1053 GLY B1054 LYS B1055 SER B1056 SITE 4 AC4 21 THR B1057 ASN B1211 ARG B1212 HOH B1236 SITE 5 AC4 21 HOH B1333 HOH B1340 HOH B1347 HOH B1355 SITE 6 AC4 21 HOH B1392 CRYST1 36.460 52.520 68.110 107.71 89.95 110.32 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027427 0.010157 0.003454 0.00000 SCALE2 0.000000 0.020304 0.006955 0.00000 SCALE3 0.000000 0.000000 0.015520 0.00000