data_3BGU # _entry.id 3BGU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BGU pdb_00003bgu 10.2210/pdb3bgu/pdb RCSB RCSB045503 ? ? WWPDB D_1000045503 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 378307 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3BGU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of dimeric ferredoxin-like protein of unknown function (YP_288824.1) from Thermobifida fusca YX at 1.50 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3BGU _cell.length_a 44.070 _cell.length_b 35.270 _cell.length_c 76.630 _cell.angle_alpha 90.00 _cell.angle_beta 104.09 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BGU _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ferredoxin-like protein of unknown function' 13000.149 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 13 ? ? ? ? 4 non-polymer syn NITROBENZENE 123.109 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 water nat water 18.015 176 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)GIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNY DFAVVADLDGEDGFRAYQDHPDHRAALAIIAP(MSE)LADRVAVQFAL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADL DGEDGFRAYQDHPDHRAALAIIAPMLADRVAVQFAL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 378307 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 GLY n 1 22 ILE n 1 23 ARG n 1 24 HIS n 1 25 ILE n 1 26 ALA n 1 27 LEU n 1 28 PHE n 1 29 ARG n 1 30 TRP n 1 31 ASN n 1 32 ASP n 1 33 THR n 1 34 VAL n 1 35 THR n 1 36 PRO n 1 37 ASP n 1 38 GLN n 1 39 VAL n 1 40 GLU n 1 41 GLN n 1 42 VAL n 1 43 ILE n 1 44 THR n 1 45 ALA n 1 46 LEU n 1 47 SER n 1 48 LYS n 1 49 LEU n 1 50 PRO n 1 51 ALA n 1 52 ALA n 1 53 ILE n 1 54 PRO n 1 55 GLU n 1 56 LEU n 1 57 LYS n 1 58 ASN n 1 59 TYR n 1 60 ALA n 1 61 PHE n 1 62 GLY n 1 63 ALA n 1 64 ASP n 1 65 LEU n 1 66 GLY n 1 67 LEU n 1 68 ALA n 1 69 ALA n 1 70 GLY n 1 71 ASN n 1 72 TYR n 1 73 ASP n 1 74 PHE n 1 75 ALA n 1 76 VAL n 1 77 VAL n 1 78 ALA n 1 79 ASP n 1 80 LEU n 1 81 ASP n 1 82 GLY n 1 83 GLU n 1 84 ASP n 1 85 GLY n 1 86 PHE n 1 87 ARG n 1 88 ALA n 1 89 TYR n 1 90 GLN n 1 91 ASP n 1 92 HIS n 1 93 PRO n 1 94 ASP n 1 95 HIS n 1 96 ARG n 1 97 ALA n 1 98 ALA n 1 99 LEU n 1 100 ALA n 1 101 ILE n 1 102 ILE n 1 103 ALA n 1 104 PRO n 1 105 MSE n 1 106 LEU n 1 107 ALA n 1 108 ASP n 1 109 ARG n 1 110 VAL n 1 111 ALA n 1 112 VAL n 1 113 GLN n 1 114 PHE n 1 115 ALA n 1 116 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermobifida _entity_src_gen.pdbx_gene_src_gene 'YP_288824.1, Tfu_0763' _entity_src_gen.gene_src_species 'Thermobifida fusca' _entity_src_gen.gene_src_strain YX _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermobifida fusca' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269800 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q47RW6_THEFY _struct_ref.pdbx_db_accession Q47RW6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQDHPDHRAAL AIIAPMLADRVAVQFAL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BGU A 20 ? 116 ? Q47RW6 1 ? 97 ? 1 97 2 1 3BGU B 20 ? 116 ? Q47RW6 1 ? 97 ? 1 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BGU MSE A 1 ? UNP Q47RW6 ? ? 'expression tag' -18 1 1 3BGU GLY A 2 ? UNP Q47RW6 ? ? 'expression tag' -17 2 1 3BGU SER A 3 ? UNP Q47RW6 ? ? 'expression tag' -16 3 1 3BGU ASP A 4 ? UNP Q47RW6 ? ? 'expression tag' -15 4 1 3BGU LYS A 5 ? UNP Q47RW6 ? ? 'expression tag' -14 5 1 3BGU ILE A 6 ? UNP Q47RW6 ? ? 'expression tag' -13 6 1 3BGU HIS A 7 ? UNP Q47RW6 ? ? 'expression tag' -12 7 1 3BGU HIS A 8 ? UNP Q47RW6 ? ? 'expression tag' -11 8 1 3BGU HIS A 9 ? UNP Q47RW6 ? ? 'expression tag' -10 9 1 3BGU HIS A 10 ? UNP Q47RW6 ? ? 'expression tag' -9 10 1 3BGU HIS A 11 ? UNP Q47RW6 ? ? 'expression tag' -8 11 1 3BGU HIS A 12 ? UNP Q47RW6 ? ? 'expression tag' -7 12 1 3BGU GLU A 13 ? UNP Q47RW6 ? ? 'expression tag' -6 13 1 3BGU ASN A 14 ? UNP Q47RW6 ? ? 'expression tag' -5 14 1 3BGU LEU A 15 ? UNP Q47RW6 ? ? 'expression tag' -4 15 1 3BGU TYR A 16 ? UNP Q47RW6 ? ? 'expression tag' -3 16 1 3BGU PHE A 17 ? UNP Q47RW6 ? ? 'expression tag' -2 17 1 3BGU GLN A 18 ? UNP Q47RW6 ? ? 'expression tag' -1 18 1 3BGU GLY A 19 ? UNP Q47RW6 ? ? 'expression tag' 0 19 2 3BGU MSE B 1 ? UNP Q47RW6 ? ? 'expression tag' -18 20 2 3BGU GLY B 2 ? UNP Q47RW6 ? ? 'expression tag' -17 21 2 3BGU SER B 3 ? UNP Q47RW6 ? ? 'expression tag' -16 22 2 3BGU ASP B 4 ? UNP Q47RW6 ? ? 'expression tag' -15 23 2 3BGU LYS B 5 ? UNP Q47RW6 ? ? 'expression tag' -14 24 2 3BGU ILE B 6 ? UNP Q47RW6 ? ? 'expression tag' -13 25 2 3BGU HIS B 7 ? UNP Q47RW6 ? ? 'expression tag' -12 26 2 3BGU HIS B 8 ? UNP Q47RW6 ? ? 'expression tag' -11 27 2 3BGU HIS B 9 ? UNP Q47RW6 ? ? 'expression tag' -10 28 2 3BGU HIS B 10 ? UNP Q47RW6 ? ? 'expression tag' -9 29 2 3BGU HIS B 11 ? UNP Q47RW6 ? ? 'expression tag' -8 30 2 3BGU HIS B 12 ? UNP Q47RW6 ? ? 'expression tag' -7 31 2 3BGU GLU B 13 ? UNP Q47RW6 ? ? 'expression tag' -6 32 2 3BGU ASN B 14 ? UNP Q47RW6 ? ? 'expression tag' -5 33 2 3BGU LEU B 15 ? UNP Q47RW6 ? ? 'expression tag' -4 34 2 3BGU TYR B 16 ? UNP Q47RW6 ? ? 'expression tag' -3 35 2 3BGU PHE B 17 ? UNP Q47RW6 ? ? 'expression tag' -2 36 2 3BGU GLN B 18 ? UNP Q47RW6 ? ? 'expression tag' -1 37 2 3BGU GLY B 19 ? UNP Q47RW6 ? ? 'expression tag' 0 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NBZ non-polymer . NITROBENZENE ? 'C6 H5 N O2' 123.109 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3BGU # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 50.0% Ethylene glycol, 5.0% PEG 1000, 0.1M Sodium acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2007-10-04 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9537 1.0 2 0.9798 1.0 3 0.9797 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list '0.9537, 0.9798, 0.9797' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 3BGU _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 27.206 _reflns.number_obs 35092 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_netI_over_sigmaI 11.240 _reflns.percent_possible_obs 91.400 _reflns.B_iso_Wilson_estimate 21.273 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.55 4605 ? 4106 0.397 1.6 ? ? ? ? ? 61.10 1 1 1.55 1.62 8520 ? 6440 0.353 2.0 ? ? ? ? ? 79.50 2 1 1.62 1.69 11722 ? 6502 0.281 2.8 ? ? ? ? ? 95.60 3 1 1.69 1.78 12791 ? 6913 0.199 3.9 ? ? ? ? ? 96.20 4 1 1.78 1.89 12661 ? 6859 0.135 5.7 ? ? ? ? ? 96.70 5 1 1.89 2.04 12984 ? 7108 0.083 9.0 ? ? ? ? ? 96.90 6 1 2.04 2.24 12194 ? 6754 0.051 13.6 ? ? ? ? ? 96.90 7 1 2.24 2.56 12455 ? 6952 0.038 17.3 ? ? ? ? ? 97.40 8 1 2.56 3.23 12375 ? 7049 0.028 22.0 ? ? ? ? ? 97.50 9 1 3.23 27.206 12240 ? 6954 0.021 29.3 ? ? ? ? ? 96.40 10 1 # _refine.entry_id 3BGU _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 27.206 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 94.900 _refine.ls_number_reflns_obs 35091 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. RAMACHANDRAN OUTLIER OF RESIDUE ASN-5 AND GLU-6 IN SUBUNIT A IS LOCATED IN POOR DENSITY. 5. N-TERMINAL HIS TAG IN CHAIN A (RESIDUES -3 TO -8) IS SEVERELY DISORDERED. 6. ACETATE AND ETHYLENE GLYCOL ARE MODELED BASED ON CRYSTALLIZATION CONDITIONS. 7. NITROBENZENE (NBZ) WAS MODELED BASED ON ELECTRON DENSITY. ; _refine.ls_R_factor_obs 0.199 _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.237 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1762 _refine.B_iso_mean 7.727 _refine.aniso_B[1][1] 0.480 _refine.aniso_B[2][2] -0.200 _refine.aniso_B[3][3] -0.570 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.600 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.pdbx_overall_ESU_R 0.085 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.064 _refine.overall_SU_B 3.321 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1610 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 1852 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 27.206 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1802 0.016 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1190 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2435 1.771 1.953 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2869 0.973 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 225 11.611 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 88 33.905 23.977 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 248 13.398 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 14.898 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 260 0.111 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2071 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 386 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 365 0.205 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1232 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 824 0.187 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 947 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 119 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 28 0.205 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 59 0.278 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 13 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1132 1.798 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 445 0.529 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1767 2.590 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 745 4.488 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 668 5.568 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.54 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 67.970 _refine_ls_shell.number_reflns_R_work 1769 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.253 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 103 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1872 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BGU _struct.title ;Crystal structure of a dimeric ferredoxin-like protein of unknown function (tfu_0763) from thermobifida fusca yx at 1.50 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ferredoxin-like fold, stress responsive a/b barrel domain, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3BGU # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 5 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 6 ? T N N 6 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 35 ? LEU A 49 ? THR A 16 LEU A 30 1 ? 15 HELX_P HELX_P2 2 GLY A 82 ? HIS A 92 ? GLY A 63 HIS A 73 1 ? 11 HELX_P HELX_P3 3 HIS A 92 ? ALA A 103 ? HIS A 73 ALA A 84 1 ? 12 HELX_P HELX_P4 4 THR B 35 ? LYS B 48 ? THR B 16 LYS B 29 1 ? 14 HELX_P HELX_P5 5 LYS B 48 ? ILE B 53 ? LYS B 29 ILE B 34 1 ? 6 HELX_P HELX_P6 6 GLY B 82 ? HIS B 92 ? GLY B 63 HIS B 73 1 ? 11 HELX_P HELX_P7 7 HIS B 92 ? ALA B 103 ? HIS B 73 ALA B 84 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A GLY 21 N ? ? A MSE 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A PRO 104 C ? ? ? 1_555 A MSE 105 N ? ? A PRO 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 105 C ? ? ? 1_555 A LEU 106 N ? ? A MSE 86 A LEU 87 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? B GLY 19 C ? ? ? 1_555 B MSE 20 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? B MSE 20 C ? ? ? 1_555 B GLY 21 N ? ? B MSE 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale7 covale both ? B PRO 104 C ? ? ? 1_555 B MSE 105 N ? ? B PRO 85 B MSE 86 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? B MSE 105 C ? ? ? 1_555 B LEU 106 N ? ? B MSE 86 B LEU 87 1_555 ? ? ? ? ? ? ? 1.352 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 56 ? ALA A 63 ? LEU A 37 ALA A 44 A 2 PHE A 74 ? ASP A 81 ? PHE A 55 ASP A 62 A 3 GLY A 21 ? TRP A 30 ? GLY A 2 TRP A 11 A 4 LEU A 106 ? ALA A 115 ? LEU A 87 ALA A 96 B 1 ASN B 58 ? ALA B 63 ? ASN B 39 ALA B 44 B 2 PHE B 74 ? ASP B 81 ? PHE B 55 ASP B 62 B 3 GLY B 21 ? TRP B 30 ? GLY B 2 TRP B 11 B 4 LEU B 106 ? ALA B 115 ? LEU B 87 ALA B 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 58 ? N ASN A 39 O ASP A 79 ? O ASP A 60 A 2 3 O ALA A 78 ? O ALA A 59 N HIS A 24 ? N HIS A 5 A 3 4 N ARG A 29 ? N ARG A 10 O ALA A 107 ? O ALA A 88 B 1 2 N ALA B 60 ? N ALA B 41 O VAL B 77 ? O VAL B 58 B 2 3 O ALA B 78 ? O ALA B 59 N HIS B 24 ? N HIS B 5 B 3 4 N ARG B 29 ? N ARG B 10 O ALA B 107 ? O ALA B 88 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 101 ? 5 'BINDING SITE FOR RESIDUE CL A 101' AC2 Software B ACT 102 ? 5 'BINDING SITE FOR RESIDUE ACT B 102' AC3 Software A EDO 102 ? 7 'BINDING SITE FOR RESIDUE EDO A 102' AC4 Software A EDO 103 ? 5 'BINDING SITE FOR RESIDUE EDO A 103' AC5 Software A EDO 104 ? 4 'BINDING SITE FOR RESIDUE EDO A 104' AC6 Software A EDO 105 ? 4 'BINDING SITE FOR RESIDUE EDO A 105' AC7 Software A EDO 106 ? 2 'BINDING SITE FOR RESIDUE EDO A 106' AC8 Software B EDO 103 ? 5 'BINDING SITE FOR RESIDUE EDO B 103' AC9 Software A EDO 107 ? 6 'BINDING SITE FOR RESIDUE EDO A 107' BC1 Software A EDO 108 ? 3 'BINDING SITE FOR RESIDUE EDO A 108' BC2 Software A EDO 109 ? 4 'BINDING SITE FOR RESIDUE EDO A 109' BC3 Software B EDO 104 ? 4 'BINDING SITE FOR RESIDUE EDO B 104' BC4 Software A EDO 110 ? 6 'BINDING SITE FOR RESIDUE EDO A 110' BC5 Software A EDO 111 ? 6 'BINDING SITE FOR RESIDUE EDO A 111' BC6 Software B EDO 105 ? 3 'BINDING SITE FOR RESIDUE EDO B 105' BC7 Software A NBZ 112 ? 10 'BINDING SITE FOR RESIDUE NBZ A 112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ALA A 51 ? ALA A 32 . ? 1_555 ? 2 AC1 5 ALA A 52 ? ALA A 33 . ? 1_555 ? 3 AC1 5 ASP A 94 ? ASP A 75 . ? 1_555 ? 4 AC1 5 EDO G . ? EDO A 105 . ? 1_555 ? 5 AC1 5 HOH S . ? HOH A 182 . ? 1_555 ? 6 AC2 5 LEU B 46 ? LEU B 27 . ? 1_555 ? 7 AC2 5 TYR B 59 ? TYR B 40 . ? 1_555 ? 8 AC2 5 TYR B 89 ? TYR B 70 . ? 1_555 ? 9 AC2 5 HIS B 95 ? HIS B 76 . ? 1_555 ? 10 AC2 5 HOH T . ? HOH B 172 . ? 1_555 ? 11 AC3 7 HIS A 24 ? HIS A 5 . ? 1_555 ? 12 AC3 7 PHE A 86 ? PHE A 67 . ? 1_555 ? 13 AC3 7 GLN A 90 ? GLN A 71 . ? 1_555 ? 14 AC3 7 HIS A 95 ? HIS A 76 . ? 1_555 ? 15 AC3 7 NBZ N . ? NBZ A 112 . ? 1_555 ? 16 AC3 7 HOH S . ? HOH A 132 . ? 1_555 ? 17 AC3 7 HOH S . ? HOH A 160 . ? 1_555 ? 18 AC4 5 LEU A 46 ? LEU A 27 . ? 1_555 ? 19 AC4 5 PRO A 50 ? PRO A 31 . ? 1_555 ? 20 AC4 5 TYR A 59 ? TYR A 40 . ? 1_555 ? 21 AC4 5 TYR A 89 ? TYR A 70 . ? 1_555 ? 22 AC4 5 HOH S . ? HOH A 114 . ? 1_555 ? 23 AC5 4 LYS A 57 ? LYS A 38 . ? 1_555 ? 24 AC5 4 ASP A 81 ? ASP A 62 . ? 1_555 ? 25 AC5 4 HOH S . ? HOH A 171 . ? 1_555 ? 26 AC5 4 ASP B 91 ? ASP B 72 . ? 1_555 ? 27 AC6 4 ALA A 52 ? ALA A 33 . ? 1_555 ? 28 AC6 4 HIS A 92 ? HIS A 73 . ? 1_555 ? 29 AC6 4 CL C . ? CL A 101 . ? 1_555 ? 30 AC6 4 HOH S . ? HOH A 192 . ? 1_555 ? 31 AC7 2 ALA A 60 ? ALA A 41 . ? 1_555 ? 32 AC7 2 PHE A 61 ? PHE A 42 . ? 1_555 ? 33 AC8 5 TYR B 59 ? TYR B 40 . ? 1_555 ? 34 AC8 5 ALA B 60 ? ALA B 41 . ? 1_555 ? 35 AC8 5 HOH T . ? HOH B 134 . ? 1_555 ? 36 AC8 5 HOH T . ? HOH B 141 . ? 1_565 ? 37 AC8 5 HOH T . ? HOH B 163 . ? 1_555 ? 38 AC9 6 ASN A 14 ? ASN A -5 . ? 1_565 ? 39 AC9 6 LEU A 15 ? LEU A -4 . ? 1_565 ? 40 AC9 6 GLU A 13 ? GLU A -6 . ? 1_565 ? 41 AC9 6 ASP A 108 ? ASP A 89 . ? 1_555 ? 42 AC9 6 ARG A 109 ? ARG A 90 . ? 1_555 ? 43 AC9 6 VAL A 110 ? VAL A 91 . ? 1_555 ? 44 BC1 3 TRP A 30 ? TRP A 11 . ? 1_555 ? 45 BC1 3 ASP A 73 ? ASP A 54 . ? 1_555 ? 46 BC1 3 HOH S . ? HOH A 169 . ? 1_555 ? 47 BC2 4 GLY A 70 ? GLY A 51 . ? 1_555 ? 48 BC2 4 EDO L . ? EDO A 110 . ? 1_555 ? 49 BC2 4 EDO M . ? EDO A 111 . ? 1_555 ? 50 BC2 4 HOH S . ? HOH A 158 . ? 1_555 ? 51 BC3 4 PHE B 61 ? PHE B 42 . ? 1_555 ? 52 BC3 4 GLY B 62 ? GLY B 43 . ? 1_555 ? 53 BC3 4 HOH T . ? HOH B 177 . ? 1_555 ? 54 BC3 4 HOH T . ? HOH B 178 . ? 1_555 ? 55 BC4 6 ARG A 29 ? ARG A 10 . ? 1_555 ? 56 BC4 6 GLY A 70 ? GLY A 51 . ? 1_555 ? 57 BC4 6 ASN A 71 ? ASN A 52 . ? 1_555 ? 58 BC4 6 EDO K . ? EDO A 109 . ? 1_555 ? 59 BC4 6 HOH S . ? HOH A 131 . ? 1_555 ? 60 BC4 6 HOH S . ? HOH A 169 . ? 1_555 ? 61 BC5 6 ASP A 64 ? ASP A 45 . ? 1_555 ? 62 BC5 6 TYR A 72 ? TYR A 53 . ? 1_555 ? 63 BC5 6 ASP A 73 ? ASP A 54 . ? 1_555 ? 64 BC5 6 EDO K . ? EDO A 109 . ? 1_555 ? 65 BC5 6 HOH S . ? HOH A 155 . ? 1_555 ? 66 BC5 6 HOH S . ? HOH A 205 . ? 1_555 ? 67 BC6 3 LEU B 15 ? LEU B -4 . ? 1_555 ? 68 BC6 3 GLU B 13 ? GLU B -6 . ? 1_555 ? 69 BC6 3 ASN B 14 ? ASN B -5 . ? 1_555 ? 70 BC7 10 HIS A 24 ? HIS A 5 . ? 1_555 ? 71 BC7 10 ALA A 26 ? ALA A 7 . ? 1_555 ? 72 BC7 10 PHE A 28 ? PHE A 9 . ? 1_555 ? 73 BC7 10 LEU A 46 ? LEU A 27 . ? 1_555 ? 74 BC7 10 TYR A 89 ? TYR A 70 . ? 1_555 ? 75 BC7 10 HIS A 95 ? HIS A 76 . ? 1_555 ? 76 BC7 10 LEU A 99 ? LEU A 80 . ? 1_555 ? 77 BC7 10 ARG A 109 ? ARG A 90 . ? 1_555 ? 78 BC7 10 EDO D . ? EDO A 102 . ? 1_555 ? 79 BC7 10 HOH S . ? HOH A 159 . ? 1_555 ? # _atom_sites.entry_id 3BGU _atom_sites.fract_transf_matrix[1][1] 0.022691 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005695 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028353 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013455 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 -8 HIS HIS A . n A 1 12 HIS 12 -7 -7 HIS HIS A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 GLY 21 2 2 GLY GLY A . n A 1 22 ILE 22 3 3 ILE ILE A . n A 1 23 ARG 23 4 4 ARG ARG A . n A 1 24 HIS 24 5 5 HIS HIS A . n A 1 25 ILE 25 6 6 ILE ILE A . n A 1 26 ALA 26 7 7 ALA ALA A . n A 1 27 LEU 27 8 8 LEU LEU A . n A 1 28 PHE 28 9 9 PHE PHE A . n A 1 29 ARG 29 10 10 ARG ARG A . n A 1 30 TRP 30 11 11 TRP TRP A . n A 1 31 ASN 31 12 12 ASN ASN A . n A 1 32 ASP 32 13 13 ASP ASP A . n A 1 33 THR 33 14 14 THR THR A . n A 1 34 VAL 34 15 15 VAL VAL A . n A 1 35 THR 35 16 16 THR THR A . n A 1 36 PRO 36 17 17 PRO PRO A . n A 1 37 ASP 37 18 18 ASP ASP A . n A 1 38 GLN 38 19 19 GLN GLN A . n A 1 39 VAL 39 20 20 VAL VAL A . n A 1 40 GLU 40 21 21 GLU GLU A . n A 1 41 GLN 41 22 22 GLN GLN A . n A 1 42 VAL 42 23 23 VAL VAL A . n A 1 43 ILE 43 24 24 ILE ILE A . n A 1 44 THR 44 25 25 THR THR A . n A 1 45 ALA 45 26 26 ALA ALA A . n A 1 46 LEU 46 27 27 LEU LEU A . n A 1 47 SER 47 28 28 SER SER A . n A 1 48 LYS 48 29 29 LYS LYS A . n A 1 49 LEU 49 30 30 LEU LEU A . n A 1 50 PRO 50 31 31 PRO PRO A . n A 1 51 ALA 51 32 32 ALA ALA A . n A 1 52 ALA 52 33 33 ALA ALA A . n A 1 53 ILE 53 34 34 ILE ILE A . n A 1 54 PRO 54 35 35 PRO PRO A . n A 1 55 GLU 55 36 36 GLU GLU A . n A 1 56 LEU 56 37 37 LEU LEU A . n A 1 57 LYS 57 38 38 LYS LYS A . n A 1 58 ASN 58 39 39 ASN ASN A . n A 1 59 TYR 59 40 40 TYR TYR A . n A 1 60 ALA 60 41 41 ALA ALA A . n A 1 61 PHE 61 42 42 PHE PHE A . n A 1 62 GLY 62 43 43 GLY GLY A . n A 1 63 ALA 63 44 44 ALA ALA A . n A 1 64 ASP 64 45 45 ASP ASP A . n A 1 65 LEU 65 46 46 LEU LEU A . n A 1 66 GLY 66 47 47 GLY GLY A . n A 1 67 LEU 67 48 48 LEU LEU A . n A 1 68 ALA 68 49 49 ALA ALA A . n A 1 69 ALA 69 50 50 ALA ALA A . n A 1 70 GLY 70 51 51 GLY GLY A . n A 1 71 ASN 71 52 52 ASN ASN A . n A 1 72 TYR 72 53 53 TYR TYR A . n A 1 73 ASP 73 54 54 ASP ASP A . n A 1 74 PHE 74 55 55 PHE PHE A . n A 1 75 ALA 75 56 56 ALA ALA A . n A 1 76 VAL 76 57 57 VAL VAL A . n A 1 77 VAL 77 58 58 VAL VAL A . n A 1 78 ALA 78 59 59 ALA ALA A . n A 1 79 ASP 79 60 60 ASP ASP A . n A 1 80 LEU 80 61 61 LEU LEU A . n A 1 81 ASP 81 62 62 ASP ASP A . n A 1 82 GLY 82 63 63 GLY GLY A . n A 1 83 GLU 83 64 64 GLU GLU A . n A 1 84 ASP 84 65 65 ASP ASP A . n A 1 85 GLY 85 66 66 GLY GLY A . n A 1 86 PHE 86 67 67 PHE PHE A . n A 1 87 ARG 87 68 68 ARG ARG A . n A 1 88 ALA 88 69 69 ALA ALA A . n A 1 89 TYR 89 70 70 TYR TYR A . n A 1 90 GLN 90 71 71 GLN GLN A . n A 1 91 ASP 91 72 72 ASP ASP A . n A 1 92 HIS 92 73 73 HIS HIS A . n A 1 93 PRO 93 74 74 PRO PRO A . n A 1 94 ASP 94 75 75 ASP ASP A . n A 1 95 HIS 95 76 76 HIS HIS A . n A 1 96 ARG 96 77 77 ARG ARG A . n A 1 97 ALA 97 78 78 ALA ALA A . n A 1 98 ALA 98 79 79 ALA ALA A . n A 1 99 LEU 99 80 80 LEU LEU A . n A 1 100 ALA 100 81 81 ALA ALA A . n A 1 101 ILE 101 82 82 ILE ILE A . n A 1 102 ILE 102 83 83 ILE ILE A . n A 1 103 ALA 103 84 84 ALA ALA A . n A 1 104 PRO 104 85 85 PRO PRO A . n A 1 105 MSE 105 86 86 MSE MSE A . n A 1 106 LEU 106 87 87 LEU LEU A . n A 1 107 ALA 107 88 88 ALA ALA A . n A 1 108 ASP 108 89 89 ASP ASP A . n A 1 109 ARG 109 90 90 ARG ARG A . n A 1 110 VAL 110 91 91 VAL VAL A . n A 1 111 ALA 111 92 92 ALA ALA A . n A 1 112 VAL 112 93 93 VAL VAL A . n A 1 113 GLN 113 94 94 GLN GLN A . n A 1 114 PHE 114 95 95 PHE PHE A . n A 1 115 ALA 115 96 96 ALA ALA A . n A 1 116 LEU 116 97 97 LEU LEU A . n B 1 1 MSE 1 -18 ? ? ? B . n B 1 2 GLY 2 -17 ? ? ? B . n B 1 3 SER 3 -16 ? ? ? B . n B 1 4 ASP 4 -15 ? ? ? B . n B 1 5 LYS 5 -14 ? ? ? B . n B 1 6 ILE 6 -13 ? ? ? B . n B 1 7 HIS 7 -12 ? ? ? B . n B 1 8 HIS 8 -11 ? ? ? B . n B 1 9 HIS 9 -10 ? ? ? B . n B 1 10 HIS 10 -9 ? ? ? B . n B 1 11 HIS 11 -8 ? ? ? B . n B 1 12 HIS 12 -7 ? ? ? B . n B 1 13 GLU 13 -6 -6 GLU GLU B . n B 1 14 ASN 14 -5 -5 ASN ASN B . n B 1 15 LEU 15 -4 -4 LEU LEU B . n B 1 16 TYR 16 -3 -3 TYR TYR B . n B 1 17 PHE 17 -2 -2 PHE PHE B . n B 1 18 GLN 18 -1 -1 GLN GLN B . n B 1 19 GLY 19 0 0 GLY GLY B . n B 1 20 MSE 20 1 1 MSE MSE B . n B 1 21 GLY 21 2 2 GLY GLY B . n B 1 22 ILE 22 3 3 ILE ILE B . n B 1 23 ARG 23 4 4 ARG ARG B . n B 1 24 HIS 24 5 5 HIS HIS B . n B 1 25 ILE 25 6 6 ILE ILE B . n B 1 26 ALA 26 7 7 ALA ALA B . n B 1 27 LEU 27 8 8 LEU LEU B . n B 1 28 PHE 28 9 9 PHE PHE B . n B 1 29 ARG 29 10 10 ARG ARG B . n B 1 30 TRP 30 11 11 TRP TRP B . n B 1 31 ASN 31 12 12 ASN ASN B . n B 1 32 ASP 32 13 13 ASP ASP B . n B 1 33 THR 33 14 14 THR THR B . n B 1 34 VAL 34 15 15 VAL VAL B . n B 1 35 THR 35 16 16 THR THR B . n B 1 36 PRO 36 17 17 PRO PRO B . n B 1 37 ASP 37 18 18 ASP ASP B . n B 1 38 GLN 38 19 19 GLN GLN B . n B 1 39 VAL 39 20 20 VAL VAL B . n B 1 40 GLU 40 21 21 GLU GLU B . n B 1 41 GLN 41 22 22 GLN GLN B . n B 1 42 VAL 42 23 23 VAL VAL B . n B 1 43 ILE 43 24 24 ILE ILE B . n B 1 44 THR 44 25 25 THR THR B . n B 1 45 ALA 45 26 26 ALA ALA B . n B 1 46 LEU 46 27 27 LEU LEU B . n B 1 47 SER 47 28 28 SER SER B . n B 1 48 LYS 48 29 29 LYS LYS B . n B 1 49 LEU 49 30 30 LEU LEU B . n B 1 50 PRO 50 31 31 PRO PRO B . n B 1 51 ALA 51 32 32 ALA ALA B . n B 1 52 ALA 52 33 33 ALA ALA B . n B 1 53 ILE 53 34 34 ILE ILE B . n B 1 54 PRO 54 35 35 PRO PRO B . n B 1 55 GLU 55 36 36 GLU GLU B . n B 1 56 LEU 56 37 37 LEU LEU B . n B 1 57 LYS 57 38 38 LYS LYS B . n B 1 58 ASN 58 39 39 ASN ASN B . n B 1 59 TYR 59 40 40 TYR TYR B . n B 1 60 ALA 60 41 41 ALA ALA B . n B 1 61 PHE 61 42 42 PHE PHE B . n B 1 62 GLY 62 43 43 GLY GLY B . n B 1 63 ALA 63 44 44 ALA ALA B . n B 1 64 ASP 64 45 45 ASP ASP B . n B 1 65 LEU 65 46 46 LEU LEU B . n B 1 66 GLY 66 47 47 GLY GLY B . n B 1 67 LEU 67 48 48 LEU LEU B . n B 1 68 ALA 68 49 49 ALA ALA B . n B 1 69 ALA 69 50 50 ALA ALA B . n B 1 70 GLY 70 51 51 GLY GLY B . n B 1 71 ASN 71 52 52 ASN ASN B . n B 1 72 TYR 72 53 53 TYR TYR B . n B 1 73 ASP 73 54 54 ASP ASP B . n B 1 74 PHE 74 55 55 PHE PHE B . n B 1 75 ALA 75 56 56 ALA ALA B . n B 1 76 VAL 76 57 57 VAL VAL B . n B 1 77 VAL 77 58 58 VAL VAL B . n B 1 78 ALA 78 59 59 ALA ALA B . n B 1 79 ASP 79 60 60 ASP ASP B . n B 1 80 LEU 80 61 61 LEU LEU B . n B 1 81 ASP 81 62 62 ASP ASP B . n B 1 82 GLY 82 63 63 GLY GLY B . n B 1 83 GLU 83 64 64 GLU GLU B . n B 1 84 ASP 84 65 65 ASP ASP B . n B 1 85 GLY 85 66 66 GLY GLY B . n B 1 86 PHE 86 67 67 PHE PHE B . n B 1 87 ARG 87 68 68 ARG ARG B . n B 1 88 ALA 88 69 69 ALA ALA B . n B 1 89 TYR 89 70 70 TYR TYR B . n B 1 90 GLN 90 71 71 GLN GLN B . n B 1 91 ASP 91 72 72 ASP ASP B . n B 1 92 HIS 92 73 73 HIS HIS B . n B 1 93 PRO 93 74 74 PRO PRO B . n B 1 94 ASP 94 75 75 ASP ASP B . n B 1 95 HIS 95 76 76 HIS HIS B . n B 1 96 ARG 96 77 77 ARG ARG B . n B 1 97 ALA 97 78 78 ALA ALA B . n B 1 98 ALA 98 79 79 ALA ALA B . n B 1 99 LEU 99 80 80 LEU LEU B . n B 1 100 ALA 100 81 81 ALA ALA B . n B 1 101 ILE 101 82 82 ILE ILE B . n B 1 102 ILE 102 83 83 ILE ILE B . n B 1 103 ALA 103 84 84 ALA ALA B . n B 1 104 PRO 104 85 85 PRO PRO B . n B 1 105 MSE 105 86 86 MSE MSE B . n B 1 106 LEU 106 87 87 LEU LEU B . n B 1 107 ALA 107 88 88 ALA ALA B . n B 1 108 ASP 108 89 89 ASP ASP B . n B 1 109 ARG 109 90 90 ARG ARG B . n B 1 110 VAL 110 91 91 VAL VAL B . n B 1 111 ALA 111 92 92 ALA ALA B . n B 1 112 VAL 112 93 93 VAL VAL B . n B 1 113 GLN 113 94 94 GLN GLN B . n B 1 114 PHE 114 95 95 PHE PHE B . n B 1 115 ALA 115 96 96 ALA ALA B . n B 1 116 LEU 116 97 97 LEU LEU B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 101 101 CL CL A . D 3 EDO 1 102 3 EDO EDO A . E 3 EDO 1 103 4 EDO EDO A . F 3 EDO 1 104 5 EDO EDO A . G 3 EDO 1 105 6 EDO EDO A . H 3 EDO 1 106 7 EDO EDO A . I 3 EDO 1 107 9 EDO EDO A . J 3 EDO 1 108 10 EDO EDO A . K 3 EDO 1 109 11 EDO EDO A . L 3 EDO 1 110 13 EDO EDO A . M 3 EDO 1 111 14 EDO EDO A . N 4 NBZ 1 112 16 NBZ NBZ A . O 5 ACT 1 102 102 ACT ACT B . P 3 EDO 1 103 8 EDO EDO B . Q 3 EDO 1 104 12 EDO EDO B . R 3 EDO 1 105 15 EDO EDO B . S 6 HOH 1 113 17 HOH HOH A . S 6 HOH 2 114 18 HOH HOH A . S 6 HOH 3 115 19 HOH HOH A . S 6 HOH 4 116 20 HOH HOH A . S 6 HOH 5 117 21 HOH HOH A . S 6 HOH 6 118 22 HOH HOH A . S 6 HOH 7 119 23 HOH HOH A . S 6 HOH 8 120 24 HOH HOH A . S 6 HOH 9 121 25 HOH HOH A . S 6 HOH 10 122 26 HOH HOH A . S 6 HOH 11 123 28 HOH HOH A . S 6 HOH 12 124 30 HOH HOH A . S 6 HOH 13 125 31 HOH HOH A . S 6 HOH 14 126 32 HOH HOH A . S 6 HOH 15 127 33 HOH HOH A . S 6 HOH 16 128 34 HOH HOH A . S 6 HOH 17 129 35 HOH HOH A . S 6 HOH 18 130 36 HOH HOH A . S 6 HOH 19 131 37 HOH HOH A . S 6 HOH 20 132 40 HOH HOH A . S 6 HOH 21 133 43 HOH HOH A . S 6 HOH 22 134 46 HOH HOH A . S 6 HOH 23 135 47 HOH HOH A . S 6 HOH 24 136 48 HOH HOH A . S 6 HOH 25 137 50 HOH HOH A . S 6 HOH 26 138 52 HOH HOH A . S 6 HOH 27 139 55 HOH HOH A . S 6 HOH 28 140 56 HOH HOH A . S 6 HOH 29 141 58 HOH HOH A . S 6 HOH 30 142 59 HOH HOH A . S 6 HOH 31 143 60 HOH HOH A . S 6 HOH 32 144 61 HOH HOH A . S 6 HOH 33 145 63 HOH HOH A . S 6 HOH 34 146 65 HOH HOH A . S 6 HOH 35 147 66 HOH HOH A . S 6 HOH 36 148 68 HOH HOH A . S 6 HOH 37 149 69 HOH HOH A . S 6 HOH 38 150 70 HOH HOH A . S 6 HOH 39 151 72 HOH HOH A . S 6 HOH 40 152 75 HOH HOH A . S 6 HOH 41 153 79 HOH HOH A . S 6 HOH 42 154 80 HOH HOH A . S 6 HOH 43 155 81 HOH HOH A . S 6 HOH 44 156 82 HOH HOH A . S 6 HOH 45 157 83 HOH HOH A . S 6 HOH 46 158 87 HOH HOH A . S 6 HOH 47 159 92 HOH HOH A . S 6 HOH 48 160 93 HOH HOH A . S 6 HOH 49 161 96 HOH HOH A . S 6 HOH 50 162 97 HOH HOH A . S 6 HOH 51 163 99 HOH HOH A . S 6 HOH 52 164 100 HOH HOH A . S 6 HOH 53 165 104 HOH HOH A . S 6 HOH 54 166 106 HOH HOH A . S 6 HOH 55 167 108 HOH HOH A . S 6 HOH 56 168 110 HOH HOH A . S 6 HOH 57 169 111 HOH HOH A . S 6 HOH 58 170 112 HOH HOH A . S 6 HOH 59 171 113 HOH HOH A . S 6 HOH 60 172 117 HOH HOH A . S 6 HOH 61 173 118 HOH HOH A . S 6 HOH 62 174 119 HOH HOH A . S 6 HOH 63 175 120 HOH HOH A . S 6 HOH 64 176 121 HOH HOH A . S 6 HOH 65 177 124 HOH HOH A . S 6 HOH 66 178 125 HOH HOH A . S 6 HOH 67 179 129 HOH HOH A . S 6 HOH 68 180 131 HOH HOH A . S 6 HOH 69 181 134 HOH HOH A . S 6 HOH 70 182 135 HOH HOH A . S 6 HOH 71 183 136 HOH HOH A . S 6 HOH 72 184 139 HOH HOH A . S 6 HOH 73 185 140 HOH HOH A . S 6 HOH 74 186 142 HOH HOH A . S 6 HOH 75 187 143 HOH HOH A . S 6 HOH 76 188 148 HOH HOH A . S 6 HOH 77 189 149 HOH HOH A . S 6 HOH 78 190 150 HOH HOH A . S 6 HOH 79 191 151 HOH HOH A . S 6 HOH 80 192 153 HOH HOH A . S 6 HOH 81 193 160 HOH HOH A . S 6 HOH 82 194 161 HOH HOH A . S 6 HOH 83 195 162 HOH HOH A . S 6 HOH 84 196 163 HOH HOH A . S 6 HOH 85 197 164 HOH HOH A . S 6 HOH 86 198 169 HOH HOH A . S 6 HOH 87 199 179 HOH HOH A . S 6 HOH 88 200 180 HOH HOH A . S 6 HOH 89 201 181 HOH HOH A . S 6 HOH 90 202 184 HOH HOH A . S 6 HOH 91 203 186 HOH HOH A . S 6 HOH 92 204 187 HOH HOH A . S 6 HOH 93 205 188 HOH HOH A . S 6 HOH 94 206 192 HOH HOH A . T 6 HOH 1 106 27 HOH HOH B . T 6 HOH 2 107 29 HOH HOH B . T 6 HOH 3 108 38 HOH HOH B . T 6 HOH 4 109 39 HOH HOH B . T 6 HOH 5 110 41 HOH HOH B . T 6 HOH 6 111 42 HOH HOH B . T 6 HOH 7 112 44 HOH HOH B . T 6 HOH 8 113 45 HOH HOH B . T 6 HOH 9 114 49 HOH HOH B . T 6 HOH 10 115 51 HOH HOH B . T 6 HOH 11 116 53 HOH HOH B . T 6 HOH 12 117 54 HOH HOH B . T 6 HOH 13 118 57 HOH HOH B . T 6 HOH 14 119 62 HOH HOH B . T 6 HOH 15 120 64 HOH HOH B . T 6 HOH 16 121 67 HOH HOH B . T 6 HOH 17 122 71 HOH HOH B . T 6 HOH 18 123 73 HOH HOH B . T 6 HOH 19 124 74 HOH HOH B . T 6 HOH 20 125 76 HOH HOH B . T 6 HOH 21 126 77 HOH HOH B . T 6 HOH 22 127 78 HOH HOH B . T 6 HOH 23 128 84 HOH HOH B . T 6 HOH 24 129 85 HOH HOH B . T 6 HOH 25 130 86 HOH HOH B . T 6 HOH 26 131 88 HOH HOH B . T 6 HOH 27 132 89 HOH HOH B . T 6 HOH 28 133 90 HOH HOH B . T 6 HOH 29 134 91 HOH HOH B . T 6 HOH 30 135 94 HOH HOH B . T 6 HOH 31 136 95 HOH HOH B . T 6 HOH 32 137 98 HOH HOH B . T 6 HOH 33 138 101 HOH HOH B . T 6 HOH 34 139 102 HOH HOH B . T 6 HOH 35 140 103 HOH HOH B . T 6 HOH 36 141 105 HOH HOH B . T 6 HOH 37 142 107 HOH HOH B . T 6 HOH 38 143 109 HOH HOH B . T 6 HOH 39 144 114 HOH HOH B . T 6 HOH 40 145 115 HOH HOH B . T 6 HOH 41 146 116 HOH HOH B . T 6 HOH 42 147 122 HOH HOH B . T 6 HOH 43 148 123 HOH HOH B . T 6 HOH 44 149 126 HOH HOH B . T 6 HOH 45 150 127 HOH HOH B . T 6 HOH 46 151 128 HOH HOH B . T 6 HOH 47 152 130 HOH HOH B . T 6 HOH 48 153 132 HOH HOH B . T 6 HOH 49 154 133 HOH HOH B . T 6 HOH 50 155 137 HOH HOH B . T 6 HOH 51 156 138 HOH HOH B . T 6 HOH 52 157 141 HOH HOH B . T 6 HOH 53 158 144 HOH HOH B . T 6 HOH 54 159 145 HOH HOH B . T 6 HOH 55 160 146 HOH HOH B . T 6 HOH 56 161 147 HOH HOH B . T 6 HOH 57 162 152 HOH HOH B . T 6 HOH 58 163 154 HOH HOH B . T 6 HOH 59 164 155 HOH HOH B . T 6 HOH 60 165 156 HOH HOH B . T 6 HOH 61 166 157 HOH HOH B . T 6 HOH 62 167 158 HOH HOH B . T 6 HOH 63 168 159 HOH HOH B . T 6 HOH 64 169 165 HOH HOH B . T 6 HOH 65 170 166 HOH HOH B . T 6 HOH 66 171 167 HOH HOH B . T 6 HOH 67 172 168 HOH HOH B . T 6 HOH 68 173 170 HOH HOH B . T 6 HOH 69 174 171 HOH HOH B . T 6 HOH 70 175 172 HOH HOH B . T 6 HOH 71 176 173 HOH HOH B . T 6 HOH 72 177 174 HOH HOH B . T 6 HOH 73 178 175 HOH HOH B . T 6 HOH 74 179 176 HOH HOH B . T 6 HOH 75 180 177 HOH HOH B . T 6 HOH 76 181 178 HOH HOH B . T 6 HOH 77 182 182 HOH HOH B . T 6 HOH 78 183 183 HOH HOH B . T 6 HOH 79 184 185 HOH HOH B . T 6 HOH 80 185 189 HOH HOH B . T 6 HOH 81 186 190 HOH HOH B . T 6 HOH 82 187 191 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 105 A MSE 86 ? MET SELENOMETHIONINE 3 B MSE 20 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 105 B MSE 86 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,D,E,F,G,H,I,J,K,L,M,N,S 2 1,3 B,O,P,Q,R,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2400 ? 2 'ABSA (A^2)' 2500 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 69.4847534437 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 74.3245496180 3 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 44.0700000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Author supporting evidence' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 25.7949 -26.1391 35.0825 -0.0831 -0.0346 -0.0018 0.0110 0.0091 -0.0121 0.9331 0.5355 1.5975 0.1347 0.6365 -0.0316 -0.0865 -0.0004 0.0869 -0.0415 0.0707 0.0361 -0.0192 -0.1012 -0.1933 'X-RAY DIFFRACTION' 2 ? refined 18.9043 -45.3905 8.6630 0.1255 -0.0961 -0.0770 -0.0493 -0.0140 0.0009 0.9595 0.8384 3.9766 0.1417 0.1932 0.2387 0.0751 -0.0379 -0.0372 -0.0841 0.0138 0.0685 0.0238 0.7631 -0.1795 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 11 A 116 ? A -8 A 97 'X-RAY DIFFRACTION' ? 2 2 B 13 B 116 ? B -6 B 97 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 SHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. ; # _pdbx_entry_details.entry_id 3BGU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;REMARK 999 REMARK 999 SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 -6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLU _pdbx_validate_rmsd_angle.auth_seq_id_2 -6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLU _pdbx_validate_rmsd_angle.auth_seq_id_3 -6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 131.73 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation 20.73 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A -6 ? A 100.28 48.51 2 1 ASN A -5 ? A 50.17 127.99 3 1 LEU A -4 ? B -6.47 33.30 4 1 TYR A -3 ? B -170.91 94.74 5 1 LEU A 30 ? ? -113.67 54.18 6 1 ASN A 39 ? A -170.69 149.81 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 HIS A -7 ? A GLU A -6 ? A 31.36 2 1 HIS A -7 ? B GLU A -6 ? B 120.58 3 1 ASN A -5 ? B LEU A -4 ? B 117.50 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -7 ? ND1 ? A HIS 12 ND1 2 1 Y 1 A HIS -7 ? CD2 ? A HIS 12 CD2 3 1 Y 1 A HIS -7 ? CE1 ? A HIS 12 CE1 4 1 Y 1 A HIS -7 ? NE2 ? A HIS 12 NE2 5 1 Y 1 A GLU -6 ? CB ? A GLU 13 CB 6 1 Y 1 A GLU -6 ? CG ? A GLU 13 CG 7 1 Y 1 A GLU -6 ? CD ? A GLU 13 CD 8 1 Y 1 A GLU -6 ? OE1 ? A GLU 13 OE1 9 1 Y 1 A GLU -6 ? OE2 ? A GLU 13 OE2 10 1 Y 1 A LEU -4 ? CG ? A LEU 15 CG 11 1 Y 1 A LEU -4 ? CD1 ? A LEU 15 CD1 12 1 Y 1 A LEU -4 ? CD2 ? A LEU 15 CD2 13 1 Y 1 B GLU -6 ? CG ? B GLU 13 CG 14 1 Y 1 B GLU -6 ? CD ? B GLU 13 CD 15 1 Y 1 B GLU -6 ? OE1 ? B GLU 13 OE1 16 1 Y 1 B GLU -6 ? OE2 ? B GLU 13 OE2 17 1 Y 1 B LEU -4 ? CD1 ? B LEU 15 CD1 18 1 Y 1 B LEU -4 ? CD2 ? B LEU 15 CD2 19 1 Y 1 B GLN 22 ? CG ? B GLN 41 CG 20 1 Y 1 B GLN 22 ? CD ? B GLN 41 CD 21 1 Y 1 B GLN 22 ? OE1 ? B GLN 41 OE1 22 1 Y 1 B GLN 22 ? NE2 ? B GLN 41 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 B MSE -18 ? B MSE 1 12 1 Y 1 B GLY -17 ? B GLY 2 13 1 Y 1 B SER -16 ? B SER 3 14 1 Y 1 B ASP -15 ? B ASP 4 15 1 Y 1 B LYS -14 ? B LYS 5 16 1 Y 1 B ILE -13 ? B ILE 6 17 1 Y 1 B HIS -12 ? B HIS 7 18 1 Y 1 B HIS -11 ? B HIS 8 19 1 Y 1 B HIS -10 ? B HIS 9 20 1 Y 1 B HIS -9 ? B HIS 10 21 1 Y 1 B HIS -8 ? B HIS 11 22 1 Y 1 B HIS -7 ? B HIS 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 1,2-ETHANEDIOL EDO 4 NITROBENZENE NBZ 5 'ACETATE ION' ACT 6 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? 3 2 'gel filtration' ? 4 2 'light scattering' ? #