HEADER LYASE 27-NOV-07 3BH2 TITLE STRUCTURAL STUDIES OF ACETOACETATE DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOACETATE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ADC, AAD; COMPND 5 EC: 4.1.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM ATCC 824; SOURCE 3 ORGANISM_TAXID: 272562; SOURCE 4 STRAIN: DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787; SOURCE 5 GENE: ADC, CA_P0165; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS ACETOACETATE DECARBOXYLASE, LYASE, PLASMID, SCHIFF BASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HO,K.N.ALLEN REVDAT 4 21-FEB-24 3BH2 1 REMARK REVDAT 3 20-OCT-21 3BH2 1 SEQADV REVDAT 2 02-JUN-09 3BH2 1 JRNL REVDAT 1 23-DEC-08 3BH2 0 JRNL AUTH M.C.HO,J.F.MENETRET,H.TSURUTA,K.N.ALLEN JRNL TITL THE ORIGIN OF THE ELECTROSTATIC PERTURBATION IN ACETOACETATE JRNL TITL 2 DECARBOXYLASE. JRNL REF NATURE V. 459 393 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19458715 JRNL DOI 10.1038/NATURE07938 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 41399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.465 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.652 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7960 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10823 ; 1.283 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 980 ; 6.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;35.030 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1374 ;18.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.908 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1212 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6016 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3538 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5273 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 451 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 164 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5086 ; 0.410 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8027 ; 0.711 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3266 ; 1.140 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2796 ; 1.926 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.95 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM PHOSPHATE BUFFER PH 5.95, 100MM REMARK 280 SARCOSINE, 15% PEG 3350, 18% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.03500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.04242 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 192.69800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.03500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.04242 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 192.69800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.03500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.04242 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 192.69800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.03500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.04242 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 192.69800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.03500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.04242 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 192.69800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.03500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.04242 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 192.69800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.08484 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 385.39600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.08484 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 385.39600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.08484 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 385.39600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.08484 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 385.39600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.08484 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 385.39600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.08484 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 385.39600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 52690 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 98 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU B 98 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 LEU C 228 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 69.30 -154.15 REMARK 500 ASP A 54 -76.08 -96.93 REMARK 500 ASP A 67 93.06 -165.26 REMARK 500 SER A 111 -141.96 -105.97 REMARK 500 ALA A 112 38.97 -146.49 REMARK 500 SER A 126 -82.59 57.94 REMARK 500 LEU A 216 72.51 -108.54 REMARK 500 SER B 16 60.82 -150.63 REMARK 500 THR B 38 -162.98 -124.41 REMARK 500 ASP B 54 -97.15 -86.36 REMARK 500 ASP B 67 82.98 -167.40 REMARK 500 HIS B 94 -61.75 -90.37 REMARK 500 SER B 111 -145.10 -113.17 REMARK 500 ASP B 125 72.77 -104.75 REMARK 500 SER B 126 -80.67 70.06 REMARK 500 GLU B 220 132.42 -171.57 REMARK 500 SER C 11 -164.98 -161.31 REMARK 500 SER C 16 66.47 -157.44 REMARK 500 ASP C 54 -98.05 -92.63 REMARK 500 ASP C 67 82.71 -158.19 REMARK 500 SER C 111 -146.37 -122.64 REMARK 500 ALA C 112 41.24 -142.00 REMARK 500 SER C 126 -79.24 62.71 REMARK 500 GLU C 220 131.57 -175.24 REMARK 500 SER D 16 69.03 -162.80 REMARK 500 ASP D 54 -97.72 -91.78 REMARK 500 ASP D 67 84.08 -158.08 REMARK 500 SER D 111 -144.95 -109.58 REMARK 500 ALA D 112 40.35 -140.65 REMARK 500 ASP D 125 74.81 -101.82 REMARK 500 SER D 126 -77.52 59.70 REMARK 500 ARG D 179 -62.47 -100.42 REMARK 500 CYS D 181 86.70 -153.10 REMARK 500 LEU D 243 32.77 -81.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 127 THR C 128 -146.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BGT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACETOACETATE DECARBOXYLASE (A HOMOLOGUE) REMARK 900 RELATED ID: 3BH3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACETOACETATE DECARBOXYLASE FROM REMARK 900 CHROMOBACTERIUM VIOLACEUM IN COMPLEX WITH ACETYL ACETONE SCHIFF REMARK 900 BASE INTERMEDIATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE MUTATION L2V HAS BEEN REMARK 999 INTRODUCED FOR CLONING PURPOSE. DBREF 3BH2 A 1 244 UNP P23670 ADC_CLOAB 1 244 DBREF 3BH2 B 1 244 UNP P23670 ADC_CLOAB 1 244 DBREF 3BH2 C 1 244 UNP P23670 ADC_CLOAB 1 244 DBREF 3BH2 D 1 244 UNP P23670 ADC_CLOAB 1 244 SEQADV 3BH2 VAL A 2 UNP P23670 LEU 2 ENGINEERED MUTATION SEQADV 3BH2 VAL B 2 UNP P23670 LEU 2 ENGINEERED MUTATION SEQADV 3BH2 VAL C 2 UNP P23670 LEU 2 ENGINEERED MUTATION SEQADV 3BH2 VAL D 2 UNP P23670 LEU 2 ENGINEERED MUTATION SEQRES 1 A 244 MET VAL LYS ASP GLU VAL ILE LYS GLN ILE SER THR PRO SEQRES 2 A 244 LEU THR SER PRO ALA PHE PRO ARG GLY PRO TYR LYS PHE SEQRES 3 A 244 HIS ASN ARG GLU TYR PHE ASN ILE VAL TYR ARG THR ASP SEQRES 4 A 244 MET ASP ALA LEU ARG LYS VAL VAL PRO GLU PRO LEU GLU SEQRES 5 A 244 ILE ASP GLU PRO LEU VAL ARG PHE GLU ILE MET ALA MET SEQRES 6 A 244 HIS ASP THR SER GLY LEU GLY CYS TYR THR GLU SER GLY SEQRES 7 A 244 GLN ALA ILE PRO VAL SER PHE ASN GLY VAL LYS GLY ASP SEQRES 8 A 244 TYR LEU HIS MET MET TYR LEU ASP ASN GLU PRO ALA ILE SEQRES 9 A 244 ALA VAL GLY ARG GLU LEU SER ALA TYR PRO LYS LYS LEU SEQRES 10 A 244 GLY TYR PRO LYS LEU PHE VAL ASP SER ASP THR LEU VAL SEQRES 11 A 244 GLY THR LEU ASP TYR GLY LYS LEU ARG VAL ALA THR ALA SEQRES 12 A 244 THR MET GLY TYR LYS HIS LYS ALA LEU ASP ALA ASN GLU SEQRES 13 A 244 ALA LYS ASP GLN ILE CYS ARG PRO ASN TYR MET LEU LYS SEQRES 14 A 244 ILE ILE PRO ASN TYR ASP GLY SER PRO ARG ILE CYS GLU SEQRES 15 A 244 LEU ILE ASN ALA LYS ILE THR ASP VAL THR VAL HIS GLU SEQRES 16 A 244 ALA TRP THR GLY PRO THR ARG LEU GLN LEU PHE ASP HIS SEQRES 17 A 244 ALA MET ALA PRO LEU ASN ASP LEU PRO VAL LYS GLU ILE SEQRES 18 A 244 VAL SER SER SER HIS ILE LEU ALA ASP ILE ILE LEU PRO SEQRES 19 A 244 ARG ALA GLU VAL ILE TYR ASP TYR LEU LYS SEQRES 1 B 244 MET VAL LYS ASP GLU VAL ILE LYS GLN ILE SER THR PRO SEQRES 2 B 244 LEU THR SER PRO ALA PHE PRO ARG GLY PRO TYR LYS PHE SEQRES 3 B 244 HIS ASN ARG GLU TYR PHE ASN ILE VAL TYR ARG THR ASP SEQRES 4 B 244 MET ASP ALA LEU ARG LYS VAL VAL PRO GLU PRO LEU GLU SEQRES 5 B 244 ILE ASP GLU PRO LEU VAL ARG PHE GLU ILE MET ALA MET SEQRES 6 B 244 HIS ASP THR SER GLY LEU GLY CYS TYR THR GLU SER GLY SEQRES 7 B 244 GLN ALA ILE PRO VAL SER PHE ASN GLY VAL LYS GLY ASP SEQRES 8 B 244 TYR LEU HIS MET MET TYR LEU ASP ASN GLU PRO ALA ILE SEQRES 9 B 244 ALA VAL GLY ARG GLU LEU SER ALA TYR PRO LYS LYS LEU SEQRES 10 B 244 GLY TYR PRO LYS LEU PHE VAL ASP SER ASP THR LEU VAL SEQRES 11 B 244 GLY THR LEU ASP TYR GLY LYS LEU ARG VAL ALA THR ALA SEQRES 12 B 244 THR MET GLY TYR LYS HIS LYS ALA LEU ASP ALA ASN GLU SEQRES 13 B 244 ALA LYS ASP GLN ILE CYS ARG PRO ASN TYR MET LEU LYS SEQRES 14 B 244 ILE ILE PRO ASN TYR ASP GLY SER PRO ARG ILE CYS GLU SEQRES 15 B 244 LEU ILE ASN ALA LYS ILE THR ASP VAL THR VAL HIS GLU SEQRES 16 B 244 ALA TRP THR GLY PRO THR ARG LEU GLN LEU PHE ASP HIS SEQRES 17 B 244 ALA MET ALA PRO LEU ASN ASP LEU PRO VAL LYS GLU ILE SEQRES 18 B 244 VAL SER SER SER HIS ILE LEU ALA ASP ILE ILE LEU PRO SEQRES 19 B 244 ARG ALA GLU VAL ILE TYR ASP TYR LEU LYS SEQRES 1 C 244 MET VAL LYS ASP GLU VAL ILE LYS GLN ILE SER THR PRO SEQRES 2 C 244 LEU THR SER PRO ALA PHE PRO ARG GLY PRO TYR LYS PHE SEQRES 3 C 244 HIS ASN ARG GLU TYR PHE ASN ILE VAL TYR ARG THR ASP SEQRES 4 C 244 MET ASP ALA LEU ARG LYS VAL VAL PRO GLU PRO LEU GLU SEQRES 5 C 244 ILE ASP GLU PRO LEU VAL ARG PHE GLU ILE MET ALA MET SEQRES 6 C 244 HIS ASP THR SER GLY LEU GLY CYS TYR THR GLU SER GLY SEQRES 7 C 244 GLN ALA ILE PRO VAL SER PHE ASN GLY VAL LYS GLY ASP SEQRES 8 C 244 TYR LEU HIS MET MET TYR LEU ASP ASN GLU PRO ALA ILE SEQRES 9 C 244 ALA VAL GLY ARG GLU LEU SER ALA TYR PRO LYS LYS LEU SEQRES 10 C 244 GLY TYR PRO LYS LEU PHE VAL ASP SER ASP THR LEU VAL SEQRES 11 C 244 GLY THR LEU ASP TYR GLY LYS LEU ARG VAL ALA THR ALA SEQRES 12 C 244 THR MET GLY TYR LYS HIS LYS ALA LEU ASP ALA ASN GLU SEQRES 13 C 244 ALA LYS ASP GLN ILE CYS ARG PRO ASN TYR MET LEU LYS SEQRES 14 C 244 ILE ILE PRO ASN TYR ASP GLY SER PRO ARG ILE CYS GLU SEQRES 15 C 244 LEU ILE ASN ALA LYS ILE THR ASP VAL THR VAL HIS GLU SEQRES 16 C 244 ALA TRP THR GLY PRO THR ARG LEU GLN LEU PHE ASP HIS SEQRES 17 C 244 ALA MET ALA PRO LEU ASN ASP LEU PRO VAL LYS GLU ILE SEQRES 18 C 244 VAL SER SER SER HIS ILE LEU ALA ASP ILE ILE LEU PRO SEQRES 19 C 244 ARG ALA GLU VAL ILE TYR ASP TYR LEU LYS SEQRES 1 D 244 MET VAL LYS ASP GLU VAL ILE LYS GLN ILE SER THR PRO SEQRES 2 D 244 LEU THR SER PRO ALA PHE PRO ARG GLY PRO TYR LYS PHE SEQRES 3 D 244 HIS ASN ARG GLU TYR PHE ASN ILE VAL TYR ARG THR ASP SEQRES 4 D 244 MET ASP ALA LEU ARG LYS VAL VAL PRO GLU PRO LEU GLU SEQRES 5 D 244 ILE ASP GLU PRO LEU VAL ARG PHE GLU ILE MET ALA MET SEQRES 6 D 244 HIS ASP THR SER GLY LEU GLY CYS TYR THR GLU SER GLY SEQRES 7 D 244 GLN ALA ILE PRO VAL SER PHE ASN GLY VAL LYS GLY ASP SEQRES 8 D 244 TYR LEU HIS MET MET TYR LEU ASP ASN GLU PRO ALA ILE SEQRES 9 D 244 ALA VAL GLY ARG GLU LEU SER ALA TYR PRO LYS LYS LEU SEQRES 10 D 244 GLY TYR PRO LYS LEU PHE VAL ASP SER ASP THR LEU VAL SEQRES 11 D 244 GLY THR LEU ASP TYR GLY LYS LEU ARG VAL ALA THR ALA SEQRES 12 D 244 THR MET GLY TYR LYS HIS LYS ALA LEU ASP ALA ASN GLU SEQRES 13 D 244 ALA LYS ASP GLN ILE CYS ARG PRO ASN TYR MET LEU LYS SEQRES 14 D 244 ILE ILE PRO ASN TYR ASP GLY SER PRO ARG ILE CYS GLU SEQRES 15 D 244 LEU ILE ASN ALA LYS ILE THR ASP VAL THR VAL HIS GLU SEQRES 16 D 244 ALA TRP THR GLY PRO THR ARG LEU GLN LEU PHE ASP HIS SEQRES 17 D 244 ALA MET ALA PRO LEU ASN ASP LEU PRO VAL LYS GLU ILE SEQRES 18 D 244 VAL SER SER SER HIS ILE LEU ALA ASP ILE ILE LEU PRO SEQRES 19 D 244 ARG ALA GLU VAL ILE TYR ASP TYR LEU LYS FORMUL 5 HOH *319(H2 O) HELIX 1 1 VAL A 2 LYS A 8 1 7 HELIX 2 2 ASP A 39 VAL A 47 1 9 HELIX 3 3 ASN A 100 LEU A 110 1 11 HELIX 4 4 ASP A 153 CYS A 162 1 10 HELIX 5 5 PRO A 212 LEU A 216 5 5 HELIX 6 6 VAL B 2 ILE B 7 1 6 HELIX 7 7 ASP B 39 LYS B 45 1 7 HELIX 8 8 ASN B 100 LEU B 110 1 11 HELIX 9 9 ASP B 153 ARG B 163 1 11 HELIX 10 10 PRO B 212 LEU B 216 5 5 HELIX 11 11 VAL C 2 ILE C 7 1 6 HELIX 12 12 ASP C 39 VAL C 47 1 9 HELIX 13 13 ASN C 100 LEU C 110 1 11 HELIX 14 14 ASP C 153 CYS C 162 1 10 HELIX 15 15 PRO C 212 LEU C 216 5 5 HELIX 16 16 VAL D 2 ILE D 7 1 6 HELIX 17 17 ASP D 39 VAL D 47 1 9 HELIX 18 18 ASN D 100 LEU D 110 1 11 HELIX 19 19 ASP D 153 CYS D 162 1 10 HELIX 20 20 PRO D 212 LEU D 216 5 5 SHEET 1 A 8 LYS A 115 LEU A 117 0 SHEET 2 A 8 VAL A 88 LEU A 98 1 N MET A 96 O LYS A 116 SHEET 3 A 8 GLY A 72 PHE A 85 -1 N ILE A 81 O TYR A 92 SHEET 4 A 8 LEU A 57 THR A 68 -1 N MET A 63 O GLU A 76 SHEET 5 A 8 LYS A 25 ARG A 37 -1 N ILE A 34 O PHE A 60 SHEET 6 A 8 GLU A 220 ILE A 232 -1 O ILE A 227 N TYR A 31 SHEET 7 A 8 VAL A 191 THR A 198 -1 N TRP A 197 O HIS A 226 SHEET 8 A 8 LYS A 150 ALA A 151 -1 N LYS A 150 O THR A 198 SHEET 1 B 5 LYS A 115 LEU A 117 0 SHEET 2 B 5 VAL A 88 LEU A 98 1 N MET A 96 O LYS A 116 SHEET 3 B 5 ASN A 165 PRO A 172 1 O TYR A 166 N LEU A 93 SHEET 4 B 5 PRO A 178 ALA A 186 -1 O GLU A 182 N LYS A 169 SHEET 5 B 5 ALA A 236 ASP A 241 -1 O TYR A 240 N LEU A 183 SHEET 1 C 4 TYR A 119 ASP A 125 0 SHEET 2 C 4 THR A 128 TYR A 135 -1 O THR A 128 N ASP A 125 SHEET 3 C 4 LEU A 138 GLY A 146 -1 O ALA A 143 N GLY A 131 SHEET 4 C 4 THR A 201 LEU A 205 -1 O GLN A 204 N THR A 142 SHEET 1 D 8 LYS B 115 LEU B 117 0 SHEET 2 D 8 VAL B 88 LEU B 98 1 N MET B 96 O LYS B 116 SHEET 3 D 8 GLY B 72 PHE B 85 -1 N VAL B 83 O GLY B 90 SHEET 4 D 8 LEU B 57 THR B 68 -1 N ARG B 59 O ALA B 80 SHEET 5 D 8 LYS B 25 ARG B 37 -1 N ILE B 34 O PHE B 60 SHEET 6 D 8 GLU B 220 ILE B 232 -1 O ALA B 229 N ARG B 29 SHEET 7 D 8 VAL B 191 THR B 198 -1 N TRP B 197 O HIS B 226 SHEET 8 D 8 LYS B 150 ALA B 151 -1 N LYS B 150 O THR B 198 SHEET 1 E 5 LYS B 115 LEU B 117 0 SHEET 2 E 5 VAL B 88 LEU B 98 1 N MET B 96 O LYS B 116 SHEET 3 E 5 ASN B 165 PRO B 172 1 O TYR B 166 N LEU B 93 SHEET 4 E 5 PRO B 178 ALA B 186 -1 O ALA B 186 N ASN B 165 SHEET 5 E 5 GLU B 237 ASP B 241 -1 O TYR B 240 N LEU B 183 SHEET 1 F 4 TYR B 119 ASP B 125 0 SHEET 2 F 4 THR B 128 TYR B 135 -1 O THR B 128 N ASP B 125 SHEET 3 F 4 LEU B 138 GLY B 146 -1 O ALA B 143 N GLY B 131 SHEET 4 F 4 THR B 201 LEU B 205 -1 O GLN B 204 N THR B 142 SHEET 1 G 8 LYS C 115 LEU C 117 0 SHEET 2 G 8 VAL C 88 LEU C 98 1 N LEU C 98 O LYS C 116 SHEET 3 G 8 GLY C 72 PHE C 85 -1 N VAL C 83 O GLY C 90 SHEET 4 G 8 LEU C 57 THR C 68 -1 N MET C 63 O GLU C 76 SHEET 5 G 8 LYS C 25 ARG C 37 -1 N ILE C 34 O PHE C 60 SHEET 6 G 8 GLU C 220 ILE C 232 -1 O ILE C 227 N TYR C 31 SHEET 7 G 8 VAL C 191 THR C 198 -1 N THR C 192 O ASP C 230 SHEET 8 G 8 LYS C 150 ALA C 151 -1 N LYS C 150 O THR C 198 SHEET 1 H 5 LYS C 115 LEU C 117 0 SHEET 2 H 5 VAL C 88 LEU C 98 1 N LEU C 98 O LYS C 116 SHEET 3 H 5 PRO C 164 PRO C 172 1 O TYR C 166 N ASP C 91 SHEET 4 H 5 PRO C 178 LYS C 187 -1 O ILE C 184 N MET C 167 SHEET 5 H 5 GLU C 237 ASP C 241 -1 O TYR C 240 N LEU C 183 SHEET 1 I 4 TYR C 119 ASP C 125 0 SHEET 2 I 4 THR C 128 TYR C 135 -1 O VAL C 130 N PHE C 123 SHEET 3 I 4 LEU C 138 GLY C 146 -1 O ALA C 143 N GLY C 131 SHEET 4 I 4 THR C 201 LEU C 205 -1 O GLN C 204 N THR C 142 SHEET 1 J 8 LYS D 115 LEU D 117 0 SHEET 2 J 8 VAL D 88 LEU D 98 1 N LEU D 98 O LYS D 116 SHEET 3 J 8 GLY D 72 PHE D 85 -1 N ILE D 81 O TYR D 92 SHEET 4 J 8 LEU D 57 THR D 68 -1 N MET D 63 O GLU D 76 SHEET 5 J 8 LYS D 25 ARG D 37 -1 N TYR D 36 O VAL D 58 SHEET 6 J 8 GLU D 220 ILE D 232 -1 O ILE D 227 N TYR D 31 SHEET 7 J 8 VAL D 191 THR D 198 -1 N THR D 192 O ASP D 230 SHEET 8 J 8 LYS D 150 ALA D 151 -1 N LYS D 150 O THR D 198 SHEET 1 K 5 LYS D 115 LEU D 117 0 SHEET 2 K 5 VAL D 88 LEU D 98 1 N LEU D 98 O LYS D 116 SHEET 3 K 5 PRO D 164 PRO D 172 1 O TYR D 166 N ASP D 91 SHEET 4 K 5 PRO D 178 LYS D 187 -1 O ILE D 184 N MET D 167 SHEET 5 K 5 GLU D 237 ASP D 241 -1 O ILE D 239 N LEU D 183 SHEET 1 L 4 TYR D 119 ASP D 125 0 SHEET 2 L 4 THR D 128 TYR D 135 -1 O THR D 128 N ASP D 125 SHEET 3 L 4 LEU D 138 GLY D 146 -1 O ALA D 143 N GLY D 131 SHEET 4 L 4 THR D 201 LEU D 205 -1 O GLN D 204 N THR D 142 CISPEP 1 THR A 12 PRO A 13 0 4.19 CISPEP 2 GLY A 22 PRO A 23 0 2.57 CISPEP 3 GLU A 49 PRO A 50 0 9.90 CISPEP 4 THR B 12 PRO B 13 0 -1.27 CISPEP 5 GLY B 22 PRO B 23 0 3.26 CISPEP 6 GLU B 49 PRO B 50 0 7.99 CISPEP 7 THR C 12 PRO C 13 0 2.20 CISPEP 8 GLY C 22 PRO C 23 0 3.60 CISPEP 9 GLU C 49 PRO C 50 0 4.34 CISPEP 10 THR D 12 PRO D 13 0 -3.93 CISPEP 11 GLY D 22 PRO D 23 0 2.91 CISPEP 12 GLU D 49 PRO D 50 0 14.23 CRYST1 104.070 104.070 578.094 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009609 0.005548 0.000000 0.00000 SCALE2 0.000000 0.011095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001730 0.00000