HEADER LYASE 27-NOV-07 3BH3 TITLE CRYSTAL STRUCTURE OF ACETOACETATE DECARBOXYLASE FROM CHROMOBACTERIUM TITLE 2 VIOLACEUM IN COMPLEX WITH ACETYL ACETONE SCHIFF BASE INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOACETATE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ADC, AAD; COMPND 5 EC: 4.1.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM ATCC 12472; SOURCE 3 ORGANISM_TAXID: 243365; SOURCE 4 STRAIN: DSM 30191 / IFO 12614 / JCM 1249 / NCIB 9131; SOURCE 5 GENE: ADC, CV_3520; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ACETOACETATE DECARBOXYLASE, SCHIFF BASE INTERMEDIATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HO,K.N.ALLEN REVDAT 3 16-OCT-24 3BH3 1 REMARK LINK REVDAT 2 02-JUN-09 3BH3 1 JRNL REVDAT 1 23-DEC-08 3BH3 0 JRNL AUTH M.C.HO,J.F.MENETRET,H.TSURUTA,K.N.ALLEN JRNL TITL THE ORIGIN OF THE ELECTROSTATIC PERTURBATION IN ACETOACETATE JRNL TITL 2 DECARBOXYLASE. JRNL REF NATURE V. 459 393 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19458715 JRNL DOI 10.1038/NATURE07938 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7928 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10801 ; 1.604 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 977 ; 7.028 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 339 ;28.018 ;22.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1225 ;17.199 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;19.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1187 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6136 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3561 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5209 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 544 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 155 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4929 ; 0.679 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7982 ; 1.204 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2999 ; 1.847 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2819 ; 2.946 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M POTASSIUM PHOSHPATE REMARK 280 DIBASIC/SODIUM PHOSPHATE MONOBASIC, PH 7.7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.83050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.50170 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.28467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.83050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.50170 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.28467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.83050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.50170 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.28467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.00341 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 168.56933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.00341 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 168.56933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.00341 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 168.56933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 48390 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 245 REMARK 465 GLN A 246 REMARK 465 ARG B 245 REMARK 465 GLN B 246 REMARK 465 ARG C 245 REMARK 465 GLN C 246 REMARK 465 GLN D 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 65 OD1 ASP A 74 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 232 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP B 101 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU B 232 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU D 232 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 -63.95 -135.71 REMARK 500 SER A 17 63.75 -160.74 REMARK 500 ALA A 55 -128.33 -109.06 REMARK 500 MET A 66 74.68 -119.55 REMARK 500 GLN A 127 -91.97 65.84 REMARK 500 ASP A 154 106.14 -56.64 REMARK 500 THR A 190 -169.71 -121.69 REMARK 500 PRO A 213 49.86 -79.39 REMARK 500 PHE A 241 112.41 -166.38 REMARK 500 PHE B 11 -56.41 -125.13 REMARK 500 SER B 17 69.70 -155.02 REMARK 500 ALA B 55 -129.61 -108.48 REMARK 500 LEU B 111 -67.26 -95.92 REMARK 500 GLN B 127 -98.36 62.16 REMARK 500 PHE B 241 117.02 -165.41 REMARK 500 PHE C 11 -60.86 -141.33 REMARK 500 SER C 17 64.31 -154.88 REMARK 500 ALA C 55 -143.36 -127.36 REMARK 500 PRO C 115 48.89 -78.15 REMARK 500 GLN C 127 -91.31 62.32 REMARK 500 CYS C 182 85.24 -166.58 REMARK 500 ALA C 212 62.28 -150.10 REMARK 500 PRO C 213 44.90 -74.96 REMARK 500 PHE D 11 -65.28 -133.86 REMARK 500 SER D 17 65.39 -159.75 REMARK 500 ALA D 55 -130.91 -101.75 REMARK 500 LEU D 111 -66.77 -93.32 REMARK 500 GLN D 127 -103.40 64.08 REMARK 500 ASP D 154 101.59 -58.38 REMARK 500 LEU D 159 -16.45 -49.79 REMARK 500 PRO D 213 49.51 -75.34 REMARK 500 LEU D 232 146.90 -175.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNH A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNH B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNH C 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNH D 247 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BGT RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH INHIBITOR REMARK 900 RELATED ID: 3BH2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACETOACETATE DECARBOXYLASE (HOMOLOGUE) DBREF 3BH3 A 1 246 UNP Q7NSA6 ADC_CHRVO 1 246 DBREF 3BH3 B 1 246 UNP Q7NSA6 ADC_CHRVO 1 246 DBREF 3BH3 C 1 246 UNP Q7NSA6 ADC_CHRVO 1 246 DBREF 3BH3 D 1 246 UNP Q7NSA6 ADC_CHRVO 1 246 SEQRES 1 A 246 MET LYS GLN GLN GLU VAL ARG GLN ARG ALA PHE ALA MET SEQRES 2 A 246 PRO LEU THR SER PRO ALA PHE PRO PRO GLY PRO TYR ARG SEQRES 3 A 246 PHE VAL ASN ARG GLU TYR MET ILE ILE THR TYR ARG THR SEQRES 4 A 246 ASP PRO ALA ALA ILE GLU ALA VAL LEU PRO GLU PRO LEU SEQRES 5 A 246 GLN MET ALA GLU PRO VAL VAL ARG TYR GLU PHE ILE ARG SEQRES 6 A 246 MET PRO ASP SER THR GLY PHE GLY ASP TYR SER GLU SER SEQRES 7 A 246 GLY GLN VAL ILE PRO VAL THR PHE ARG GLY GLU ARG GLY SEQRES 8 A 246 SER TYR THR LEU ALA MET PHE LEU ASP ASP GLN PRO PRO SEQRES 9 A 246 LEU ALA GLY GLY ARG GLU LEU TRP GLY PHE PRO LYS LYS SEQRES 10 A 246 ALA GLY LYS PRO ARG LEU GLU VAL HIS GLN ASP THR LEU SEQRES 11 A 246 VAL GLY SER LEU ASP PHE GLY PRO VAL ARG ILE ALA THR SEQRES 12 A 246 GLY THR MET GLY TYR LYS TYR GLU ALA LEU ASP ARG SER SEQRES 13 A 246 ALA LEU LEU ALA SER LEU ALA GLU PRO ASN PHE LEU LEU SEQRES 14 A 246 LYS ILE ILE PRO HIS VAL ASP GLY SER PRO ARG ILE CYS SEQRES 15 A 246 GLU LEU VAL ARG TYR HIS THR THR ASP VAL ALA ILE LYS SEQRES 16 A 246 GLY ALA TRP SER ALA PRO GLY SER LEU GLU LEU HIS PRO SEQRES 17 A 246 HIS ALA LEU ALA PRO VAL ALA ALA LEU PRO VAL LEU GLU SEQRES 18 A 246 VAL LEU SER ALA ARG HIS PHE VAL CYS ASP LEU THR LEU SEQRES 19 A 246 ASP LEU GLY THR VAL VAL PHE ASP TYR LEU ARG GLN SEQRES 1 B 246 MET LYS GLN GLN GLU VAL ARG GLN ARG ALA PHE ALA MET SEQRES 2 B 246 PRO LEU THR SER PRO ALA PHE PRO PRO GLY PRO TYR ARG SEQRES 3 B 246 PHE VAL ASN ARG GLU TYR MET ILE ILE THR TYR ARG THR SEQRES 4 B 246 ASP PRO ALA ALA ILE GLU ALA VAL LEU PRO GLU PRO LEU SEQRES 5 B 246 GLN MET ALA GLU PRO VAL VAL ARG TYR GLU PHE ILE ARG SEQRES 6 B 246 MET PRO ASP SER THR GLY PHE GLY ASP TYR SER GLU SER SEQRES 7 B 246 GLY GLN VAL ILE PRO VAL THR PHE ARG GLY GLU ARG GLY SEQRES 8 B 246 SER TYR THR LEU ALA MET PHE LEU ASP ASP GLN PRO PRO SEQRES 9 B 246 LEU ALA GLY GLY ARG GLU LEU TRP GLY PHE PRO LYS LYS SEQRES 10 B 246 ALA GLY LYS PRO ARG LEU GLU VAL HIS GLN ASP THR LEU SEQRES 11 B 246 VAL GLY SER LEU ASP PHE GLY PRO VAL ARG ILE ALA THR SEQRES 12 B 246 GLY THR MET GLY TYR LYS TYR GLU ALA LEU ASP ARG SER SEQRES 13 B 246 ALA LEU LEU ALA SER LEU ALA GLU PRO ASN PHE LEU LEU SEQRES 14 B 246 LYS ILE ILE PRO HIS VAL ASP GLY SER PRO ARG ILE CYS SEQRES 15 B 246 GLU LEU VAL ARG TYR HIS THR THR ASP VAL ALA ILE LYS SEQRES 16 B 246 GLY ALA TRP SER ALA PRO GLY SER LEU GLU LEU HIS PRO SEQRES 17 B 246 HIS ALA LEU ALA PRO VAL ALA ALA LEU PRO VAL LEU GLU SEQRES 18 B 246 VAL LEU SER ALA ARG HIS PHE VAL CYS ASP LEU THR LEU SEQRES 19 B 246 ASP LEU GLY THR VAL VAL PHE ASP TYR LEU ARG GLN SEQRES 1 C 246 MET LYS GLN GLN GLU VAL ARG GLN ARG ALA PHE ALA MET SEQRES 2 C 246 PRO LEU THR SER PRO ALA PHE PRO PRO GLY PRO TYR ARG SEQRES 3 C 246 PHE VAL ASN ARG GLU TYR MET ILE ILE THR TYR ARG THR SEQRES 4 C 246 ASP PRO ALA ALA ILE GLU ALA VAL LEU PRO GLU PRO LEU SEQRES 5 C 246 GLN MET ALA GLU PRO VAL VAL ARG TYR GLU PHE ILE ARG SEQRES 6 C 246 MET PRO ASP SER THR GLY PHE GLY ASP TYR SER GLU SER SEQRES 7 C 246 GLY GLN VAL ILE PRO VAL THR PHE ARG GLY GLU ARG GLY SEQRES 8 C 246 SER TYR THR LEU ALA MET PHE LEU ASP ASP GLN PRO PRO SEQRES 9 C 246 LEU ALA GLY GLY ARG GLU LEU TRP GLY PHE PRO LYS LYS SEQRES 10 C 246 ALA GLY LYS PRO ARG LEU GLU VAL HIS GLN ASP THR LEU SEQRES 11 C 246 VAL GLY SER LEU ASP PHE GLY PRO VAL ARG ILE ALA THR SEQRES 12 C 246 GLY THR MET GLY TYR LYS TYR GLU ALA LEU ASP ARG SER SEQRES 13 C 246 ALA LEU LEU ALA SER LEU ALA GLU PRO ASN PHE LEU LEU SEQRES 14 C 246 LYS ILE ILE PRO HIS VAL ASP GLY SER PRO ARG ILE CYS SEQRES 15 C 246 GLU LEU VAL ARG TYR HIS THR THR ASP VAL ALA ILE LYS SEQRES 16 C 246 GLY ALA TRP SER ALA PRO GLY SER LEU GLU LEU HIS PRO SEQRES 17 C 246 HIS ALA LEU ALA PRO VAL ALA ALA LEU PRO VAL LEU GLU SEQRES 18 C 246 VAL LEU SER ALA ARG HIS PHE VAL CYS ASP LEU THR LEU SEQRES 19 C 246 ASP LEU GLY THR VAL VAL PHE ASP TYR LEU ARG GLN SEQRES 1 D 246 MET LYS GLN GLN GLU VAL ARG GLN ARG ALA PHE ALA MET SEQRES 2 D 246 PRO LEU THR SER PRO ALA PHE PRO PRO GLY PRO TYR ARG SEQRES 3 D 246 PHE VAL ASN ARG GLU TYR MET ILE ILE THR TYR ARG THR SEQRES 4 D 246 ASP PRO ALA ALA ILE GLU ALA VAL LEU PRO GLU PRO LEU SEQRES 5 D 246 GLN MET ALA GLU PRO VAL VAL ARG TYR GLU PHE ILE ARG SEQRES 6 D 246 MET PRO ASP SER THR GLY PHE GLY ASP TYR SER GLU SER SEQRES 7 D 246 GLY GLN VAL ILE PRO VAL THR PHE ARG GLY GLU ARG GLY SEQRES 8 D 246 SER TYR THR LEU ALA MET PHE LEU ASP ASP GLN PRO PRO SEQRES 9 D 246 LEU ALA GLY GLY ARG GLU LEU TRP GLY PHE PRO LYS LYS SEQRES 10 D 246 ALA GLY LYS PRO ARG LEU GLU VAL HIS GLN ASP THR LEU SEQRES 11 D 246 VAL GLY SER LEU ASP PHE GLY PRO VAL ARG ILE ALA THR SEQRES 12 D 246 GLY THR MET GLY TYR LYS TYR GLU ALA LEU ASP ARG SER SEQRES 13 D 246 ALA LEU LEU ALA SER LEU ALA GLU PRO ASN PHE LEU LEU SEQRES 14 D 246 LYS ILE ILE PRO HIS VAL ASP GLY SER PRO ARG ILE CYS SEQRES 15 D 246 GLU LEU VAL ARG TYR HIS THR THR ASP VAL ALA ILE LYS SEQRES 16 D 246 GLY ALA TRP SER ALA PRO GLY SER LEU GLU LEU HIS PRO SEQRES 17 D 246 HIS ALA LEU ALA PRO VAL ALA ALA LEU PRO VAL LEU GLU SEQRES 18 D 246 VAL LEU SER ALA ARG HIS PHE VAL CYS ASP LEU THR LEU SEQRES 19 D 246 ASP LEU GLY THR VAL VAL PHE ASP TYR LEU ARG GLN HET PNH A 247 6 HET PNH B 247 6 HET PNH C 247 6 HET PNH D 247 6 HETNAM PNH PENTAN-2-ONE FORMUL 5 PNH 4(C5 H10 O) FORMUL 9 HOH *400(H2 O) HELIX 1 1 LYS A 2 ALA A 10 1 9 HELIX 2 2 ASP A 40 ALA A 46 1 7 HELIX 3 3 ASP A 101 LEU A 111 1 11 HELIX 4 4 ASP A 154 LEU A 162 1 9 HELIX 5 5 PRO A 213 LEU A 217 5 5 HELIX 6 6 LYS B 2 ALA B 10 1 9 HELIX 7 7 ASP B 40 LEU B 48 1 9 HELIX 8 8 ASP B 101 LEU B 111 1 11 HELIX 9 9 ASP B 154 LEU B 162 1 9 HELIX 10 10 PRO B 213 LEU B 217 5 5 HELIX 11 11 LYS C 2 ALA C 10 1 9 HELIX 12 12 ASP C 40 ALA C 46 1 7 HELIX 13 13 ASP C 101 LEU C 111 1 11 HELIX 14 14 ASP C 154 GLU C 164 1 11 HELIX 15 15 PRO C 213 LEU C 217 5 5 HELIX 16 16 LYS D 2 ALA D 10 1 9 HELIX 17 17 ASP D 40 ALA D 46 1 7 HELIX 18 18 ASP D 101 LEU D 111 1 11 HELIX 19 19 ASP D 154 ALA D 163 1 10 HELIX 20 20 PRO D 213 LEU D 217 5 5 SHEET 1 A 8 GLN A 53 MET A 54 0 SHEET 2 A 8 GLY A 73 PHE A 86 -1 O THR A 85 N GLN A 53 SHEET 3 A 8 GLU A 89 LEU A 99 -1 O GLY A 91 N VAL A 84 SHEET 4 A 8 VAL A 58 SER A 69 0 SHEET 5 A 8 TYR A 25 ARG A 38 -1 N ILE A 35 O TYR A 61 SHEET 6 A 8 GLU A 221 LEU A 234 -1 O ARG A 226 N ILE A 34 SHEET 7 A 8 THR A 189 SER A 199 -1 N TRP A 198 O HIS A 227 SHEET 8 A 8 GLU A 151 ALA A 152 -1 N GLU A 151 O SER A 199 SHEET 1 B 6 LYS A 116 ALA A 118 0 SHEET 2 B 6 GLU A 89 LEU A 99 1 N MET A 97 O LYS A 117 SHEET 3 B 6 GLY A 73 PHE A 86 -1 N VAL A 84 O GLY A 91 SHEET 4 B 6 ASN A 166 PRO A 173 0 SHEET 5 B 6 PRO A 179 TYR A 187 -1 O ARG A 180 N ILE A 172 SHEET 6 B 6 THR A 238 ASP A 242 -1 O PHE A 241 N LEU A 184 SHEET 1 C 4 LYS A 120 HIS A 126 0 SHEET 2 C 4 THR A 129 PHE A 136 -1 O THR A 129 N HIS A 126 SHEET 3 C 4 VAL A 139 GLY A 147 -1 O GLY A 144 N GLY A 132 SHEET 4 C 4 GLY A 202 LEU A 206 -1 O GLU A 205 N THR A 143 SHEET 1 D 8 GLN B 53 MET B 54 0 SHEET 2 D 8 GLY B 73 PHE B 86 -1 O THR B 85 N GLN B 53 SHEET 3 D 8 GLU B 89 LEU B 99 -1 O GLY B 91 N VAL B 84 SHEET 4 D 8 VAL B 58 SER B 69 0 SHEET 5 D 8 TYR B 25 ARG B 38 -1 N ILE B 35 O TYR B 61 SHEET 6 D 8 GLU B 221 LEU B 234 -1 O LEU B 232 N PHE B 27 SHEET 7 D 8 THR B 189 SER B 199 -1 N THR B 190 O THR B 233 SHEET 8 D 8 GLU B 151 ALA B 152 -1 N GLU B 151 O SER B 199 SHEET 1 E 6 LYS B 116 ALA B 118 0 SHEET 2 E 6 GLU B 89 LEU B 99 1 N LEU B 99 O LYS B 117 SHEET 3 E 6 GLY B 73 PHE B 86 -1 N VAL B 84 O GLY B 91 SHEET 4 E 6 ASN B 166 PRO B 173 0 SHEET 5 E 6 PRO B 179 TYR B 187 -1 O VAL B 185 N LEU B 168 SHEET 6 E 6 THR B 238 ASP B 242 -1 O THR B 238 N ARG B 186 SHEET 1 F 4 LYS B 120 HIS B 126 0 SHEET 2 F 4 THR B 129 PHE B 136 -1 O THR B 129 N HIS B 126 SHEET 3 F 4 VAL B 139 GLY B 147 -1 O VAL B 139 N PHE B 136 SHEET 4 F 4 GLY B 202 LEU B 206 -1 O GLU B 205 N THR B 143 SHEET 1 G 8 GLN C 53 MET C 54 0 SHEET 2 G 8 GLY C 73 PHE C 86 -1 O THR C 85 N GLN C 53 SHEET 3 G 8 GLU C 89 LEU C 99 -1 O GLY C 91 N VAL C 84 SHEET 4 G 8 VAL C 58 SER C 69 0 SHEET 5 G 8 TYR C 25 ARG C 38 -1 N ILE C 35 O TYR C 61 SHEET 6 G 8 GLU C 221 LEU C 234 -1 O LEU C 232 N PHE C 27 SHEET 7 G 8 THR C 189 SER C 199 -1 N LYS C 195 O VAL C 229 SHEET 8 G 8 GLU C 151 ALA C 152 -1 N GLU C 151 O SER C 199 SHEET 1 H 6 LYS C 116 ALA C 118 0 SHEET 2 H 6 GLU C 89 LEU C 99 1 N LEU C 99 O LYS C 117 SHEET 3 H 6 GLY C 73 PHE C 86 -1 N VAL C 84 O GLY C 91 SHEET 4 H 6 ASN C 166 PRO C 173 0 SHEET 5 H 6 PRO C 179 TYR C 187 -1 O ARG C 180 N ILE C 172 SHEET 6 H 6 THR C 238 ASP C 242 -1 O PHE C 241 N LEU C 184 SHEET 1 I 4 LYS C 120 HIS C 126 0 SHEET 2 I 4 THR C 129 PHE C 136 -1 O THR C 129 N HIS C 126 SHEET 3 I 4 VAL C 139 GLY C 147 -1 O GLY C 144 N GLY C 132 SHEET 4 I 4 GLY C 202 LEU C 206 -1 O GLU C 205 N THR C 143 SHEET 1 J 8 GLN D 53 MET D 54 0 SHEET 2 J 8 GLY D 73 PHE D 86 -1 O THR D 85 N GLN D 53 SHEET 3 J 8 GLU D 89 LEU D 99 -1 O GLY D 91 N VAL D 84 SHEET 4 J 8 VAL D 58 SER D 69 0 SHEET 5 J 8 TYR D 25 ARG D 38 -1 N ILE D 35 O TYR D 61 SHEET 6 J 8 GLU D 221 LEU D 234 -1 O LEU D 223 N THR D 36 SHEET 7 J 8 THR D 189 SER D 199 -1 N THR D 190 O THR D 233 SHEET 8 J 8 GLU D 151 ALA D 152 -1 N GLU D 151 O SER D 199 SHEET 1 K 6 LYS D 116 ALA D 118 0 SHEET 2 K 6 GLU D 89 LEU D 99 1 N LEU D 99 O LYS D 117 SHEET 3 K 6 GLY D 73 PHE D 86 -1 N VAL D 84 O GLY D 91 SHEET 4 K 6 ASN D 166 PRO D 173 0 SHEET 5 K 6 PRO D 179 TYR D 187 -1 O VAL D 185 N LEU D 168 SHEET 6 K 6 THR D 238 ASP D 242 -1 O THR D 238 N ARG D 186 SHEET 1 L 4 LYS D 120 HIS D 126 0 SHEET 2 L 4 THR D 129 PHE D 136 -1 O THR D 129 N HIS D 126 SHEET 3 L 4 VAL D 139 GLY D 147 -1 O VAL D 139 N PHE D 136 SHEET 4 L 4 GLY D 202 LEU D 206 -1 O SER D 203 N THR D 145 LINK NZ LYS A 116 C2 PNH A 247 1555 1555 1.25 LINK NZ LYS B 116 C2 PNH B 247 1555 1555 1.26 LINK NZ LYS C 116 C2 PNH C 247 1555 1555 1.27 LINK NZ LYS D 116 C2 PNH D 247 1555 1555 1.25 CISPEP 1 MET A 13 PRO A 14 0 -10.92 CISPEP 2 GLY A 23 PRO A 24 0 3.84 CISPEP 3 GLU A 50 PRO A 51 0 1.90 CISPEP 4 MET B 13 PRO B 14 0 -9.73 CISPEP 5 GLY B 23 PRO B 24 0 -1.94 CISPEP 6 GLU B 50 PRO B 51 0 10.84 CISPEP 7 MET C 13 PRO C 14 0 -15.54 CISPEP 8 GLY C 23 PRO C 24 0 2.62 CISPEP 9 GLU C 50 PRO C 51 0 9.50 CISPEP 10 MET D 13 PRO D 14 0 -13.52 CISPEP 11 GLY D 23 PRO D 24 0 1.76 CISPEP 12 GLU D 50 PRO D 51 0 11.60 SITE 1 AC1 3 ARG A 30 TYR A 75 LYS A 116 SITE 1 AC2 5 ARG B 30 TYR B 75 PRO B 104 PHE B 114 SITE 2 AC2 5 LYS B 116 SITE 1 AC3 3 ARG C 30 PRO C 104 LYS C 116 SITE 1 AC4 4 ARG D 30 MET D 97 PHE D 114 LYS D 116 CRYST1 105.661 105.661 252.854 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009464 0.005464 0.000000 0.00000 SCALE2 0.000000 0.010928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003955 0.00000