HEADER UNKNOWN FUNCTION 28-NOV-07 3BHN TITLE CRYSTAL STRUCTURE OF A DJ-1/PFPI-LIKE PROTEIN (SHEW_2856) FROM TITLE 2 SHEWANELLA LOIHICA PV-4 AT 1.76 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIJ/PFPI DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA PV-4; SOURCE 3 ORGANISM_TAXID: 323850; SOURCE 4 STRAIN: PV-4, BAA-1088; SOURCE 5 GENE: YP_001094981.1, SHEW_2856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BHN 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BHN 1 REMARK LINK REVDAT 5 25-OCT-17 3BHN 1 REMARK REVDAT 4 13-JUL-11 3BHN 1 VERSN REVDAT 3 23-MAR-11 3BHN 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BHN 1 VERSN REVDAT 1 11-DEC-07 3BHN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DJ-1 LIKE PROTEIN (YP_001094981.1) FROM JRNL TITL 2 SHEWANELLA LOIHICA PV-4 AT 1.76 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1728 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1133 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2360 ; 1.397 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2815 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 4.968 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;37.769 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;12.681 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;20.813 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1960 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 323 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 351 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1195 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 847 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 857 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1185 ; 1.862 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 456 ; 0.461 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1790 ; 2.502 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 671 ; 4.785 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 556 ; 6.046 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4506 65.3131 23.1685 REMARK 3 T TENSOR REMARK 3 T11: -0.0127 T22: -0.0462 REMARK 3 T33: -0.0284 T12: -0.0107 REMARK 3 T13: -0.0453 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.1771 L22: 1.5381 REMARK 3 L33: 1.0973 L12: -0.0202 REMARK 3 L13: 0.3503 L23: -0.7110 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: 0.0231 S13: -0.0758 REMARK 3 S21: -0.0640 S22: 0.1154 S23: 0.1004 REMARK 3 S31: 0.0917 S32: -0.1528 S33: -0.1491 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6618 72.8180 32.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: -0.0514 REMARK 3 T33: -0.0479 T12: -0.0024 REMARK 3 T13: -0.0538 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.2614 L22: 1.2876 REMARK 3 L33: 1.4684 L12: 0.4210 REMARK 3 L13: -0.0549 L23: -0.3008 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: -0.1459 S13: -0.0033 REMARK 3 S21: 0.2490 S22: 0.0081 S23: -0.0895 REMARK 3 S31: -0.0980 S32: 0.0030 S33: -0.0546 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1304 73.6973 18.9981 REMARK 3 T TENSOR REMARK 3 T11: -0.0278 T22: -0.0158 REMARK 3 T33: 0.0050 T12: 0.0201 REMARK 3 T13: -0.0261 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.9434 L22: 1.0057 REMARK 3 L33: 0.8699 L12: 0.0503 REMARK 3 L13: 0.4371 L23: -0.1668 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: 0.1454 S13: -0.0353 REMARK 3 S21: 0.0364 S22: -0.1076 S23: -0.2168 REMARK 3 S31: 0.0920 S32: 0.1515 S33: 0.0375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. 1,2-ETHANEDIOL MOLECULES FROM THE CRYSTALLIZATION REMARK 3 CONDITIONS HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 3BHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537, 0.9798, 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27863 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 29.223 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.35 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NA TARTRATE, 20.0% PEG REMARK 280 3350, NO BUFFER PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.21000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.42000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.31500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 150.52500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.10500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.21000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 120.42000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 150.52500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.31500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.10500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -71.32000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 123.52986 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.10500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 LEU A 215 REMARK 465 VAL A 216 REMARK 465 VAL A 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CE NZ REMARK 470 GLN A 45 CD OE1 NE2 REMARK 470 LYS A 51 CE NZ REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 GLN A 79 OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 93 CD NE CZ NH1 NH2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 LYS A 124 NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLN A 196 CD OE1 NE2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 100 -124.81 47.90 REMARK 500 PHE A 166 -111.13 -129.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377869 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. DBREF 3BHN A 1 217 UNP A3QGX4 A3QGX4_SHELP 1 217 SEQADV 3BHN MSE A -18 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN GLY A -17 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN SER A -16 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN ASP A -15 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN LYS A -14 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN ILE A -13 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN HIS A -12 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN HIS A -11 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN HIS A -10 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN HIS A -9 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN HIS A -8 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN HIS A -7 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN GLU A -6 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN ASN A -5 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN LEU A -4 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN TYR A -3 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN PHE A -2 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN GLN A -1 UNP A3QGX4 EXPRESSION TAG SEQADV 3BHN GLY A 0 UNP A3QGX4 EXPRESSION TAG SEQRES 1 A 236 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 236 ASN LEU TYR PHE GLN GLY MSE TYR LYS VAL GLY ILE VAL SEQRES 3 A 236 LEU PHE ASP ASP PHE THR ASP VAL ASP PHE PHE LEU MSE SEQRES 4 A 236 ASN ASP LEU LEU GLY ARG THR SER ASP SER TRP THR VAL SEQRES 5 A 236 ARG ILE LEU GLY THR LYS PRO GLU HIS HIS SER GLN LEU SEQRES 6 A 236 GLY MSE THR VAL LYS THR ASP GLY HIS VAL SER GLU VAL SEQRES 7 A 236 LYS GLU GLN ASP VAL VAL LEU ILE THR SER GLY TYR ARG SEQRES 8 A 236 GLY ILE PRO ALA ALA LEU GLN ASP GLU ASN PHE MSE SER SEQRES 9 A 236 ALA LEU LYS LEU ASP PRO SER ARG GLN LEU ILE GLY SER SEQRES 10 A 236 ILE CYS ALA GLY SER PHE VAL LEU HIS GLU LEU GLY LEU SEQRES 11 A 236 LEU LYS GLY LYS LYS LEU THR THR ASN PRO ASP ALA LYS SEQRES 12 A 236 ALA VAL LEU GLN GLY MSE GLY GLY ASP VAL GLN ASP LEU SEQRES 13 A 236 PRO LEU VAL ILE GLU GLY ASN ILE ALA THR ALA GLY GLY SEQRES 14 A 236 CYS LEU SER LEU LEU TYR LEU VAL GLY TRP LEU ALA GLU SEQRES 15 A 236 ARG LEU PHE ASP SER VAL LYS ARG LYS GLN ILE GLN ASN SEQRES 16 A 236 GLN LEU ILE PRO ALA GLY GLN MSE GLU ILE PHE GLU THR SEQRES 17 A 236 LEU ILE SER GLU THR ILE GLN SER ALA GLU SER ALA TYR SEQRES 18 A 236 GLU TYR ARG SER ALA CYS GLU SER ASP ALA GLU SER LEU SEQRES 19 A 236 VAL VAL MODRES 3BHN MSE A 1 MET SELENOMETHIONINE MODRES 3BHN MSE A 20 MET SELENOMETHIONINE MODRES 3BHN MSE A 48 MET SELENOMETHIONINE MODRES 3BHN MSE A 84 MET SELENOMETHIONINE MODRES 3BHN MSE A 130 MET SELENOMETHIONINE MODRES 3BHN MSE A 184 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 48 8 HET MSE A 84 8 HET MSE A 130 8 HET MSE A 184 16 HET EDO A 218 4 HET EDO A 219 4 HET EDO A 220 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *204(H2 O) HELIX 1 1 THR A 13 GLY A 25 1 13 HELIX 2 2 SER A 57 GLN A 62 5 6 HELIX 3 3 ARG A 72 GLN A 79 1 8 HELIX 4 4 ASP A 80 LEU A 87 1 8 HELIX 5 5 ALA A 101 LEU A 109 1 9 HELIX 6 6 ASN A 120 ASP A 122 5 3 HELIX 7 7 ALA A 123 MSE A 130 1 8 HELIX 8 8 GLY A 150 LEU A 152 5 3 HELIX 9 9 SER A 153 PHE A 166 1 14 HELIX 10 10 ASP A 167 ASN A 176 1 10 HELIX 11 11 GLN A 183 SER A 214 1 32 SHEET 1 A 7 GLY A 54 HIS A 55 0 SHEET 2 A 7 TRP A 31 GLY A 37 1 N GLY A 37 O GLY A 54 SHEET 3 A 7 TYR A 2 VAL A 7 1 N ILE A 6 O LEU A 36 SHEET 4 A 7 VAL A 64 ILE A 67 1 O LEU A 66 N VAL A 7 SHEET 5 A 7 LEU A 95 ILE A 99 1 O GLY A 97 N VAL A 65 SHEET 6 A 7 ILE A 145 ALA A 148 1 O ALA A 146 N ILE A 96 SHEET 7 A 7 LEU A 139 GLU A 142 -1 N GLU A 142 O ILE A 145 SHEET 1 B 2 GLU A 41 HIS A 43 0 SHEET 2 B 2 THR A 49 LYS A 51 -1 O VAL A 50 N HIS A 42 SHEET 1 C 2 LYS A 116 LEU A 117 0 SHEET 2 C 2 ASP A 133 VAL A 134 1 O ASP A 133 N LEU A 117 LINK C MSE A 1 N TYR A 2 1555 1555 1.32 LINK C LEU A 19 N MSE A 20 1555 1555 1.34 LINK C MSE A 20 N ASN A 21 1555 1555 1.33 LINK C GLY A 47 N MSE A 48 1555 1555 1.32 LINK C MSE A 48 N THR A 49 1555 1555 1.33 LINK C PHE A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N SER A 85 1555 1555 1.34 LINK C GLY A 129 N MSE A 130 1555 1555 1.34 LINK C MSE A 130 N GLY A 131 1555 1555 1.34 LINK C GLN A 183 N AMSE A 184 1555 1555 1.34 LINK C GLN A 183 N BMSE A 184 1555 1555 1.33 LINK C AMSE A 184 N GLU A 185 1555 1555 1.33 LINK C BMSE A 184 N GLU A 185 1555 1555 1.33 SITE 1 AC1 6 ARG A 93 GLN A 94 LEU A 95 HOH A 346 SITE 2 AC1 6 HOH A 387 HOH A 405 SITE 1 AC2 6 PHE A 9 THR A 38 ALA A 77 ASP A 80 SITE 2 AC2 6 HOH A 235 HOH A 422 SITE 1 AC3 5 PHE A 17 ILE A 35 HOH A 335 HOH A 379 SITE 2 AC3 5 HOH A 424 CRYST1 71.320 71.320 180.630 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014021 0.008095 0.000000 0.00000 SCALE2 0.000000 0.016190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005536 0.00000 HETATM 1 N MSE A 1 5.117 54.667 12.464 1.00 38.20 N HETATM 2 CA MSE A 1 4.007 55.648 12.721 1.00 39.43 C HETATM 3 C MSE A 1 3.665 55.738 14.216 1.00 33.81 C HETATM 4 O MSE A 1 3.249 54.753 14.843 1.00 34.25 O HETATM 5 CB MSE A 1 2.750 55.243 11.944 1.00 40.97 C HETATM 6 CG MSE A 1 1.823 56.391 11.578 1.00 41.72 C HETATM 7 SE MSE A 1 1.905 56.862 9.659 0.75 49.17 SE HETATM 8 CE MSE A 1 0.425 58.079 9.605 1.00 31.40 C