data_3BHP # _entry.id 3BHP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BHP RCSB RCSB045534 WWPDB D_1000045534 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB SR384 . unspecified PDB 2HEP 'NMR structure (fragment 1-42)' unspecified PDB 2JVD 'NMR structure (fragment 1-48)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BHP _pdbx_database_status.recvd_initial_deposition_date 2007-11-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.P.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Janjua, H.' 4 'Cunningham, K.' 5 'Maglaqui, M.' 6 'Owens, L.A.' 7 'Zhao, L.' 8 'Xiao, R.' 9 'Baran, M.C.' 10 'Acton, T.B.' 11 'Rost, B.' 12 'Montelione, G.T.' 13 'Hunt, J.F.' 14 'Tong, L.' 15 'Northeast Structural Genomics Consortium (NESG)' 16 # _citation.id primary _citation.title 'Crystal structure of the UPF0291 protein ynzC from Bacillus subtilis at the resolution 2.0 A.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuzin, A.P.' 1 primary 'Su, M.' 2 primary 'Seetharaman, J.' 3 primary 'Janjua, H.' 4 primary 'Cunningham, K.' 5 primary 'Maglaqui, M.' 6 primary 'Owens, L.A.' 7 primary 'Zhao, L.' 8 primary 'Xiao, R.' 9 primary 'Baran, M.C.' 10 primary 'Acton, T.B.' 11 primary 'Rost, B.' 12 primary 'Montelione, G.T.' 13 primary 'Hunt, J.F.' 14 primary 'Tong, L.' 15 # _cell.entry_id 3BHP _cell.length_a 65.279 _cell.length_b 38.460 _cell.length_c 86.785 _cell.angle_alpha 90.00 _cell.angle_beta 107.95 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BHP _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0291 protein ynzC' 7027.784 3 ? ? 'Residues 1-52' ? 2 water nat water 18.015 196 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MSE)ISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSS(MSE)KNTLKSVLEHHHHHH' _entity_poly.pdbx_seq_one_letter_code_can MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSVLEHHHHHH _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier SR384 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ILE n 1 3 SER n 1 4 ASN n 1 5 ALA n 1 6 LYS n 1 7 ILE n 1 8 ALA n 1 9 ARG n 1 10 ILE n 1 11 ASN n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 ALA n 1 16 LYS n 1 17 ALA n 1 18 LYS n 1 19 ALA n 1 20 GLY n 1 21 VAL n 1 22 ILE n 1 23 THR n 1 24 GLU n 1 25 GLU n 1 26 GLU n 1 27 LYS n 1 28 ALA n 1 29 GLU n 1 30 GLN n 1 31 GLN n 1 32 LYS n 1 33 LEU n 1 34 ARG n 1 35 GLN n 1 36 GLU n 1 37 TYR n 1 38 LEU n 1 39 LYS n 1 40 GLY n 1 41 PHE n 1 42 ARG n 1 43 SER n 1 44 SER n 1 45 MSE n 1 46 LYS n 1 47 ASN n 1 48 THR n 1 49 LEU n 1 50 LYS n 1 51 SER n 1 52 VAL n 1 53 LEU n 1 54 GLU n 1 55 HIS n 1 56 HIS n 1 57 HIS n 1 58 HIS n 1 59 HIS n 1 60 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'ynzC, BSU17880' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YNZC_BACSU _struct_ref.pdbx_db_accession O31818 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSV _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BHP A 1 ? 52 ? O31818 1 ? 52 ? 1 52 2 1 3BHP B 1 ? 52 ? O31818 1 ? 52 ? 1 52 3 1 3BHP C 1 ? 52 ? O31818 1 ? 52 ? 1 52 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BHP LEU A 53 ? UNP O31818 ? ? 'EXPRESSION TAG' 53 1 1 3BHP GLU A 54 ? UNP O31818 ? ? 'EXPRESSION TAG' 54 2 1 3BHP HIS A 55 ? UNP O31818 ? ? 'EXPRESSION TAG' 55 3 1 3BHP HIS A 56 ? UNP O31818 ? ? 'EXPRESSION TAG' 56 4 1 3BHP HIS A 57 ? UNP O31818 ? ? 'EXPRESSION TAG' 57 5 1 3BHP HIS A 58 ? UNP O31818 ? ? 'EXPRESSION TAG' 58 6 1 3BHP HIS A 59 ? UNP O31818 ? ? 'EXPRESSION TAG' 59 7 1 3BHP HIS A 60 ? UNP O31818 ? ? 'EXPRESSION TAG' 60 8 2 3BHP LEU B 53 ? UNP O31818 ? ? 'EXPRESSION TAG' 53 9 2 3BHP GLU B 54 ? UNP O31818 ? ? 'EXPRESSION TAG' 54 10 2 3BHP HIS B 55 ? UNP O31818 ? ? 'EXPRESSION TAG' 55 11 2 3BHP HIS B 56 ? UNP O31818 ? ? 'EXPRESSION TAG' 56 12 2 3BHP HIS B 57 ? UNP O31818 ? ? 'EXPRESSION TAG' 57 13 2 3BHP HIS B 58 ? UNP O31818 ? ? 'EXPRESSION TAG' 58 14 2 3BHP HIS B 59 ? UNP O31818 ? ? 'EXPRESSION TAG' 59 15 2 3BHP HIS B 60 ? UNP O31818 ? ? 'EXPRESSION TAG' 60 16 3 3BHP LEU C 53 ? UNP O31818 ? ? 'EXPRESSION TAG' 53 17 3 3BHP GLU C 54 ? UNP O31818 ? ? 'EXPRESSION TAG' 54 18 3 3BHP HIS C 55 ? UNP O31818 ? ? 'EXPRESSION TAG' 55 19 3 3BHP HIS C 56 ? UNP O31818 ? ? 'EXPRESSION TAG' 56 20 3 3BHP HIS C 57 ? UNP O31818 ? ? 'EXPRESSION TAG' 57 21 3 3BHP HIS C 58 ? UNP O31818 ? ? 'EXPRESSION TAG' 58 22 3 3BHP HIS C 59 ? UNP O31818 ? ? 'EXPRESSION TAG' 59 23 3 3BHP HIS C 60 ? UNP O31818 ? ? 'EXPRESSION TAG' 60 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BHP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 49.96 _exptl_crystal.description 'The structure factor file contains Friedel pairs' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_details '0.1M KH2PO4, 0.1M Na Citrate, 40% PEG 1000, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-10-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97900 # _reflns.entry_id 3BHP _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 26190 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.4 _reflns.B_iso_Wilson_estimate 7.1 _reflns.pdbx_redundancy 15.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.123 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BHP _refine.ls_number_reflns_obs 26053 _refine.ls_number_reflns_all 26190 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF 660559.39 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.55 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 90.7 _refine.ls_R_factor_obs 0.2289 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2289 _refine.ls_R_factor_R_free 0.2623 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.3 _refine.ls_number_reflns_R_free 2246 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.9 _refine.aniso_B[1][1] -5.991 _refine.aniso_B[2][2] 0.700 _refine.aniso_B[3][3] 5.291 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 2.001 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.45 _refine.solvent_model_param_bsol 62.6638 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'The Friedel pairs were used in phasing. BULK SOLVENT MODEL USED IN REFINEMENT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3BHP _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs -0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1211 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 196 _refine_hist.number_atoms_total 1407 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 19.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004672 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.82237 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 16.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.63 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.519 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.332 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.555 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.915 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.01 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2864 _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.percent_reflns_obs 70.2 _refine_ls_shell.R_factor_R_free 0.21 _refine_ls_shell.R_factor_R_free_error 0.012 _refine_ls_shell.percent_reflns_R_free 9.8 _refine_ls_shell.number_reflns_R_free 312 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 3BHP _struct.title ;Crystal structure of UPF0291 protein ynzC from Bacillus subtilis at resolution 2.0 A. Northeast Structural Genomics Consortium target SR384 ; _struct.pdbx_descriptor 'UPF0291 protein ynzC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BHP _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;NESG, SR384, O31818, UPF0291 protein ynzC, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Cytoplasm, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? ALA A 19 ? SER A 3 ALA A 19 1 ? 17 HELX_P HELX_P2 2 THR A 23 ? LEU A 49 ? THR A 23 LEU A 49 1 ? 27 HELX_P HELX_P3 3 SER B 3 ? ALA B 19 ? SER B 3 ALA B 19 1 ? 17 HELX_P HELX_P4 4 THR B 23 ? GLY B 40 ? THR B 23 GLY B 40 1 ? 18 HELX_P HELX_P5 5 PHE B 41 ? THR B 48 ? PHE B 41 THR B 48 1 ? 8 HELX_P HELX_P6 6 SER C 3 ? ALA C 19 ? SER C 3 ALA C 19 1 ? 17 HELX_P HELX_P7 7 THR C 23 ? GLY C 40 ? THR C 23 GLY C 40 1 ? 18 HELX_P HELX_P8 8 PHE C 41 ? ASN C 47 ? PHE C 41 ASN C 47 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A ILE 2 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A SER 44 C ? ? ? 1_555 A MSE 45 N ? ? A SER 44 A MSE 45 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A MSE 45 C ? ? ? 1_555 A LYS 46 N ? ? A MSE 45 A LYS 46 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? B MSE 1 C ? ? ? 1_555 B ILE 2 N ? ? B MSE 1 B ILE 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? B SER 44 C ? ? ? 1_555 B MSE 45 N ? ? B SER 44 B MSE 45 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? B MSE 45 C ? ? ? 1_555 B LYS 46 N ? ? B MSE 45 B LYS 46 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? C MSE 1 C ? ? ? 1_555 C ILE 2 N ? ? C MSE 1 C ILE 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? C SER 44 C ? ? ? 1_555 C MSE 45 N ? ? C SER 44 C MSE 45 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? C MSE 45 C ? ? ? 1_555 C LYS 46 N ? ? C MSE 45 C LYS 46 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3BHP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BHP _atom_sites.fract_transf_matrix[1][1] 0.015319 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004963 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026001 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012112 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 MSE 45 45 45 MSE MSE A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LEU 53 53 ? ? ? A . n A 1 54 GLU 54 54 ? ? ? A . n A 1 55 HIS 55 55 ? ? ? A . n A 1 56 HIS 56 56 ? ? ? A . n A 1 57 HIS 57 57 ? ? ? A . n A 1 58 HIS 58 58 ? ? ? A . n A 1 59 HIS 59 59 ? ? ? A . n A 1 60 HIS 60 60 ? ? ? A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 ILE 2 2 2 ILE ILE B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 LYS 6 6 6 LYS LYS B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 ASN 11 11 11 ASN ASN B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 ALA 15 15 15 ALA ALA B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 ILE 22 22 22 ILE ILE B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 GLN 30 30 30 GLN GLN B . n B 1 31 GLN 31 31 31 GLN GLN B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 GLN 35 35 35 GLN GLN B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 TYR 37 37 37 TYR TYR B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 PHE 41 41 41 PHE PHE B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 SER 43 43 43 SER SER B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 MSE 45 45 45 MSE MSE B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 ASN 47 47 47 ASN ASN B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 LEU 49 49 ? ? ? B . n B 1 50 LYS 50 50 ? ? ? B . n B 1 51 SER 51 51 ? ? ? B . n B 1 52 VAL 52 52 ? ? ? B . n B 1 53 LEU 53 53 ? ? ? B . n B 1 54 GLU 54 54 ? ? ? B . n B 1 55 HIS 55 55 ? ? ? B . n B 1 56 HIS 56 56 ? ? ? B . n B 1 57 HIS 57 57 ? ? ? B . n B 1 58 HIS 58 58 ? ? ? B . n B 1 59 HIS 59 59 ? ? ? B . n B 1 60 HIS 60 60 ? ? ? B . n C 1 1 MSE 1 1 1 MSE MSE C . n C 1 2 ILE 2 2 2 ILE ILE C . n C 1 3 SER 3 3 3 SER SER C . n C 1 4 ASN 4 4 4 ASN ASN C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 LYS 6 6 6 LYS LYS C . n C 1 7 ILE 7 7 7 ILE ILE C . n C 1 8 ALA 8 8 8 ALA ALA C . n C 1 9 ARG 9 9 9 ARG ARG C . n C 1 10 ILE 10 10 10 ILE ILE C . n C 1 11 ASN 11 11 11 ASN ASN C . n C 1 12 GLU 12 12 12 GLU GLU C . n C 1 13 LEU 13 13 13 LEU LEU C . n C 1 14 ALA 14 14 14 ALA ALA C . n C 1 15 ALA 15 15 15 ALA ALA C . n C 1 16 LYS 16 16 16 LYS LYS C . n C 1 17 ALA 17 17 17 ALA ALA C . n C 1 18 LYS 18 18 18 LYS LYS C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 GLY 20 20 20 GLY GLY C . n C 1 21 VAL 21 21 21 VAL VAL C . n C 1 22 ILE 22 22 22 ILE ILE C . n C 1 23 THR 23 23 23 THR THR C . n C 1 24 GLU 24 24 24 GLU GLU C . n C 1 25 GLU 25 25 25 GLU GLU C . n C 1 26 GLU 26 26 26 GLU GLU C . n C 1 27 LYS 27 27 27 LYS LYS C . n C 1 28 ALA 28 28 28 ALA ALA C . n C 1 29 GLU 29 29 29 GLU GLU C . n C 1 30 GLN 30 30 30 GLN GLN C . n C 1 31 GLN 31 31 31 GLN GLN C . n C 1 32 LYS 32 32 32 LYS LYS C . n C 1 33 LEU 33 33 33 LEU LEU C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 GLN 35 35 35 GLN GLN C . n C 1 36 GLU 36 36 36 GLU GLU C . n C 1 37 TYR 37 37 37 TYR TYR C . n C 1 38 LEU 38 38 38 LEU LEU C . n C 1 39 LYS 39 39 39 LYS LYS C . n C 1 40 GLY 40 40 40 GLY GLY C . n C 1 41 PHE 41 41 41 PHE PHE C . n C 1 42 ARG 42 42 42 ARG ARG C . n C 1 43 SER 43 43 43 SER SER C . n C 1 44 SER 44 44 44 SER SER C . n C 1 45 MSE 45 45 45 MSE MSE C . n C 1 46 LYS 46 46 46 LYS LYS C . n C 1 47 ASN 47 47 47 ASN ASN C . n C 1 48 THR 48 48 48 THR THR C . n C 1 49 LEU 49 49 49 LEU LEU C . n C 1 50 LYS 50 50 50 LYS LYS C . n C 1 51 SER 51 51 51 SER SER C . n C 1 52 VAL 52 52 52 VAL VAL C . n C 1 53 LEU 53 53 53 LEU LEU C . n C 1 54 GLU 54 54 54 GLU GLU C . n C 1 55 HIS 55 55 ? ? ? C . n C 1 56 HIS 56 56 ? ? ? C . n C 1 57 HIS 57 57 ? ? ? C . n C 1 58 HIS 58 58 ? ? ? C . n C 1 59 HIS 59 59 ? ? ? C . n C 1 60 HIS 60 60 ? ? ? C . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 61 61 HOH HOH A . D 2 HOH 2 62 62 HOH HOH A . D 2 HOH 3 63 63 HOH HOH A . D 2 HOH 4 64 64 HOH HOH A . D 2 HOH 5 65 65 HOH HOH A . D 2 HOH 6 66 66 HOH HOH A . D 2 HOH 7 67 67 HOH HOH A . D 2 HOH 8 68 68 HOH HOH A . D 2 HOH 9 69 69 HOH HOH A . D 2 HOH 10 70 70 HOH HOH A . D 2 HOH 11 71 71 HOH HOH A . D 2 HOH 12 72 72 HOH HOH A . D 2 HOH 13 73 73 HOH HOH A . D 2 HOH 14 74 74 HOH HOH A . D 2 HOH 15 75 75 HOH HOH A . D 2 HOH 16 76 76 HOH HOH A . D 2 HOH 17 77 77 HOH HOH A . D 2 HOH 18 78 78 HOH HOH A . D 2 HOH 19 79 79 HOH HOH A . D 2 HOH 20 80 80 HOH HOH A . D 2 HOH 21 81 81 HOH HOH A . D 2 HOH 22 82 82 HOH HOH A . D 2 HOH 23 83 83 HOH HOH A . D 2 HOH 24 84 84 HOH HOH A . D 2 HOH 25 85 85 HOH HOH A . D 2 HOH 26 86 86 HOH HOH A . D 2 HOH 27 87 87 HOH HOH A . D 2 HOH 28 88 88 HOH HOH A . D 2 HOH 29 89 89 HOH HOH A . D 2 HOH 30 90 90 HOH HOH A . D 2 HOH 31 91 91 HOH HOH A . D 2 HOH 32 92 92 HOH HOH A . D 2 HOH 33 93 93 HOH HOH A . D 2 HOH 34 94 94 HOH HOH A . D 2 HOH 35 95 95 HOH HOH A . D 2 HOH 36 96 96 HOH HOH A . D 2 HOH 37 97 97 HOH HOH A . D 2 HOH 38 98 98 HOH HOH A . D 2 HOH 39 99 99 HOH HOH A . D 2 HOH 40 100 100 HOH HOH A . D 2 HOH 41 101 101 HOH HOH A . D 2 HOH 42 102 102 HOH HOH A . D 2 HOH 43 103 103 HOH HOH A . D 2 HOH 44 104 104 HOH HOH A . D 2 HOH 45 105 105 HOH HOH A . D 2 HOH 46 106 106 HOH HOH A . D 2 HOH 47 107 107 HOH HOH A . D 2 HOH 48 108 108 HOH HOH A . D 2 HOH 49 109 109 HOH HOH A . D 2 HOH 50 110 110 HOH HOH A . D 2 HOH 51 111 111 HOH HOH A . D 2 HOH 52 112 112 HOH HOH A . D 2 HOH 53 113 113 HOH HOH A . D 2 HOH 54 114 114 HOH HOH A . D 2 HOH 55 115 115 HOH HOH A . D 2 HOH 56 116 116 HOH HOH A . D 2 HOH 57 117 117 HOH HOH A . D 2 HOH 58 118 118 HOH HOH A . D 2 HOH 59 119 119 HOH HOH A . D 2 HOH 60 120 120 HOH HOH A . D 2 HOH 61 121 121 HOH HOH A . D 2 HOH 62 122 122 HOH HOH A . D 2 HOH 63 123 123 HOH HOH A . D 2 HOH 64 124 124 HOH HOH A . D 2 HOH 65 125 125 HOH HOH A . D 2 HOH 66 126 126 HOH HOH A . D 2 HOH 67 127 127 HOH HOH A . D 2 HOH 68 128 128 HOH HOH A . D 2 HOH 69 129 129 HOH HOH A . D 2 HOH 70 130 130 HOH HOH A . D 2 HOH 71 131 131 HOH HOH A . D 2 HOH 72 133 133 HOH HOH A . D 2 HOH 73 134 112 HOH HOH A . D 2 HOH 74 135 124 HOH HOH A . D 2 HOH 75 136 143 HOH HOH A . D 2 HOH 76 137 145 HOH HOH A . D 2 HOH 77 138 157 HOH HOH A . E 2 HOH 1 61 61 HOH HOH B . E 2 HOH 2 62 62 HOH HOH B . E 2 HOH 3 63 63 HOH HOH B . E 2 HOH 4 64 65 HOH HOH B . E 2 HOH 5 65 66 HOH HOH B . E 2 HOH 6 66 67 HOH HOH B . E 2 HOH 7 67 68 HOH HOH B . E 2 HOH 8 68 69 HOH HOH B . E 2 HOH 9 69 70 HOH HOH B . E 2 HOH 10 70 71 HOH HOH B . E 2 HOH 11 71 72 HOH HOH B . E 2 HOH 12 72 73 HOH HOH B . E 2 HOH 13 73 74 HOH HOH B . E 2 HOH 14 74 75 HOH HOH B . E 2 HOH 15 75 76 HOH HOH B . E 2 HOH 16 76 77 HOH HOH B . E 2 HOH 17 77 78 HOH HOH B . E 2 HOH 18 78 79 HOH HOH B . E 2 HOH 19 79 80 HOH HOH B . E 2 HOH 20 80 81 HOH HOH B . E 2 HOH 21 81 82 HOH HOH B . E 2 HOH 22 82 84 HOH HOH B . E 2 HOH 23 83 85 HOH HOH B . E 2 HOH 24 84 86 HOH HOH B . E 2 HOH 25 85 87 HOH HOH B . E 2 HOH 26 86 88 HOH HOH B . E 2 HOH 27 87 89 HOH HOH B . E 2 HOH 28 88 90 HOH HOH B . E 2 HOH 29 89 91 HOH HOH B . E 2 HOH 30 90 92 HOH HOH B . E 2 HOH 31 91 93 HOH HOH B . E 2 HOH 32 92 94 HOH HOH B . E 2 HOH 33 93 95 HOH HOH B . E 2 HOH 34 94 96 HOH HOH B . E 2 HOH 35 95 97 HOH HOH B . E 2 HOH 36 96 98 HOH HOH B . E 2 HOH 37 97 99 HOH HOH B . E 2 HOH 38 98 100 HOH HOH B . E 2 HOH 39 99 101 HOH HOH B . E 2 HOH 40 100 103 HOH HOH B . E 2 HOH 41 101 104 HOH HOH B . E 2 HOH 42 102 106 HOH HOH B . E 2 HOH 43 103 107 HOH HOH B . E 2 HOH 44 104 109 HOH HOH B . E 2 HOH 45 105 110 HOH HOH B . E 2 HOH 46 106 111 HOH HOH B . E 2 HOH 47 107 113 HOH HOH B . E 2 HOH 48 108 114 HOH HOH B . E 2 HOH 49 109 115 HOH HOH B . E 2 HOH 50 110 116 HOH HOH B . E 2 HOH 51 111 130 HOH HOH B . E 2 HOH 52 112 126 HOH HOH B . E 2 HOH 53 113 149 HOH HOH B . E 2 HOH 54 114 164 HOH HOH B . F 2 HOH 1 132 132 HOH HOH C . F 2 HOH 2 133 102 HOH HOH C . F 2 HOH 3 134 64 HOH HOH C . F 2 HOH 4 135 105 HOH HOH C . F 2 HOH 5 136 108 HOH HOH C . F 2 HOH 6 137 107 HOH HOH C . F 2 HOH 7 138 108 HOH HOH C . F 2 HOH 8 139 109 HOH HOH C . F 2 HOH 9 140 110 HOH HOH C . F 2 HOH 10 141 111 HOH HOH C . F 2 HOH 11 142 112 HOH HOH C . F 2 HOH 12 143 113 HOH HOH C . F 2 HOH 13 144 114 HOH HOH C . F 2 HOH 14 145 115 HOH HOH C . F 2 HOH 15 146 116 HOH HOH C . F 2 HOH 16 147 117 HOH HOH C . F 2 HOH 17 148 118 HOH HOH C . F 2 HOH 18 149 119 HOH HOH C . F 2 HOH 19 150 120 HOH HOH C . F 2 HOH 20 151 121 HOH HOH C . F 2 HOH 21 152 122 HOH HOH C . F 2 HOH 22 153 123 HOH HOH C . F 2 HOH 23 154 125 HOH HOH C . F 2 HOH 24 155 127 HOH HOH C . F 2 HOH 25 156 128 HOH HOH C . F 2 HOH 26 157 129 HOH HOH C . F 2 HOH 27 158 131 HOH HOH C . F 2 HOH 28 159 132 HOH HOH C . F 2 HOH 29 160 133 HOH HOH C . F 2 HOH 30 161 134 HOH HOH C . F 2 HOH 31 162 135 HOH HOH C . F 2 HOH 32 163 136 HOH HOH C . F 2 HOH 33 164 137 HOH HOH C . F 2 HOH 34 165 138 HOH HOH C . F 2 HOH 35 166 139 HOH HOH C . F 2 HOH 36 167 140 HOH HOH C . F 2 HOH 37 168 141 HOH HOH C . F 2 HOH 38 169 142 HOH HOH C . F 2 HOH 39 170 144 HOH HOH C . F 2 HOH 40 171 146 HOH HOH C . F 2 HOH 41 172 147 HOH HOH C . F 2 HOH 42 173 148 HOH HOH C . F 2 HOH 43 174 150 HOH HOH C . F 2 HOH 44 175 151 HOH HOH C . F 2 HOH 45 176 152 HOH HOH C . F 2 HOH 46 177 153 HOH HOH C . F 2 HOH 47 178 154 HOH HOH C . F 2 HOH 48 179 155 HOH HOH C . F 2 HOH 49 180 156 HOH HOH C . F 2 HOH 50 181 158 HOH HOH C . F 2 HOH 51 182 159 HOH HOH C . F 2 HOH 52 183 160 HOH HOH C . F 2 HOH 53 184 161 HOH HOH C . F 2 HOH 54 185 162 HOH HOH C . F 2 HOH 55 186 163 HOH HOH C . F 2 HOH 56 187 165 HOH HOH C . F 2 HOH 57 188 166 HOH HOH C . F 2 HOH 58 189 167 HOH HOH C . F 2 HOH 59 190 168 HOH HOH C . F 2 HOH 60 191 169 HOH HOH C . F 2 HOH 61 192 1 HOH HOH C . F 2 HOH 62 193 2 HOH HOH C . F 2 HOH 63 194 3 HOH HOH C . F 2 HOH 64 195 4 HOH HOH C . F 2 HOH 65 196 5 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 45 ? MET SELENOMETHIONINE 3 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 45 B MSE 45 ? MET SELENOMETHIONINE 5 C MSE 1 C MSE 1 ? MET SELENOMETHIONINE 6 C MSE 45 C MSE 45 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,E 3 1 C,F 4 1 A,B,C,D,E,F # _pdbx_struct_assembly_prop.biol_id 4 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4060 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 117 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-11 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 ADSC 'data collection' Quantum ? 2 DENZO 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU C 49 ? ? -141.02 -7.03 2 1 LYS C 50 ? ? 62.55 94.68 3 1 SER C 51 ? ? 56.37 -145.76 4 1 LEU C 53 ? ? 40.83 79.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 53 ? A LEU 53 2 1 Y 1 A GLU 54 ? A GLU 54 3 1 Y 1 A HIS 55 ? A HIS 55 4 1 Y 1 A HIS 56 ? A HIS 56 5 1 Y 1 A HIS 57 ? A HIS 57 6 1 Y 1 A HIS 58 ? A HIS 58 7 1 Y 1 A HIS 59 ? A HIS 59 8 1 Y 1 A HIS 60 ? A HIS 60 9 1 Y 1 B LEU 49 ? B LEU 49 10 1 Y 1 B LYS 50 ? B LYS 50 11 1 Y 1 B SER 51 ? B SER 51 12 1 Y 1 B VAL 52 ? B VAL 52 13 1 Y 1 B LEU 53 ? B LEU 53 14 1 Y 1 B GLU 54 ? B GLU 54 15 1 Y 1 B HIS 55 ? B HIS 55 16 1 Y 1 B HIS 56 ? B HIS 56 17 1 Y 1 B HIS 57 ? B HIS 57 18 1 Y 1 B HIS 58 ? B HIS 58 19 1 Y 1 B HIS 59 ? B HIS 59 20 1 Y 1 B HIS 60 ? B HIS 60 21 1 Y 1 C HIS 55 ? C HIS 55 22 1 Y 1 C HIS 56 ? C HIS 56 23 1 Y 1 C HIS 57 ? C HIS 57 24 1 Y 1 C HIS 58 ? C HIS 58 25 1 Y 1 C HIS 59 ? C HIS 59 26 1 Y 1 C HIS 60 ? C HIS 60 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #